RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 MGME1Q9BQP7 344 aa7.24□□□□□ -1.25
NUP54-215ENST00000514313 KLHL20Q9Y2M5 609 aa7.24□□□□□ -1.25
NUP54-215ENST00000514313 INSL5Q9Y5Q6 135 aa7.24□□□□□ -1.25
NUP54-215ENST00000514313 A0A1B0GVT2 93 aa7.23□□□□□ -1.25
NUP54-215ENST00000514313 hDV102S1A0JD36 115 aa7.23□□□□□ -1.25
NUP54-215ENST00000514313 SLC16A5O15375 505 aa7.23□□□□□ -1.25
NUP54-215ENST00000514313 MCCP23508 829 aa7.23□□□□□ -1.25
NUP54-215ENST00000514313 ATP5DP30049 168 aa7.23□□□□□ -1.25
NUP54-215ENST00000514313 HSPA4P34932 840 aa7.23□□□□□ -1.25
NUP54-215ENST00000514313 PCGF2P35227 344 aa7.23□□□□□ -1.25
NUP54-215ENST00000514313 PRKCIP41743 596 aa7.23□□□□□ -1.25
NUP54-215ENST00000514313 SEC61BP60468 96 aaKnown RBP7.23□□□□□ -1.25
NUP54-215ENST00000514313 SSBP2P81877 361 aaPredicted RBP7.23□□□□□ -1.25
NUP54-215ENST00000514313 SMN1Q16637 294 aaKnown RBP7.23□□□□□ -1.25
NUP54-215ENST00000514313 VWC2Q2TAL6 325 aa7.23□□□□□ -1.25
NUP54-215ENST00000514313 KLHL26Q53HC5 615 aa7.23□□□□□ -1.25
NUP54-215ENST00000514313 FAM69BQ5VUD6 431 aa7.23□□□□□ -1.25
NUP54-215ENST00000514313 ADCK2Q7Z695 626 aa7.23□□□□□ -1.25
NUP54-215ENST00000514313 CHERPQ8IWX8 916 aaKnown RBP7.23□□□□□ -1.25
NUP54-215ENST00000514313 GDAP1Q8TB36 358 aa7.23□□□□□ -1.25
NUP54-215ENST00000514313 WFIKKN2Q8TEU8 576 aa7.23□□□□□ -1.25
NUP54-215ENST00000514313 SLC44A1Q8WWI5 657 aa7.23□□□□□ -1.25
NUP54-215ENST00000514313 ERLEC1Q96DZ1 483 aa7.23□□□□□ -1.25
NUP54-215ENST00000514313 SLC22A12Q96S37 553 aa7.23□□□□□ -1.25
NUP54-215ENST00000514313 PCYT2Q99447 389 aa7.23□□□□□ -1.25
NUP54-215ENST00000514313 SPRTNQ9H040 489 aaPredicted RBP7.23□□□□□ -1.25
NUP54-215ENST00000514313 MCM9Q9NXL9 1143 aa7.23□□□□□ -1.25
NUP54-215ENST00000514313 SLC24A2Q9UI40 661 aa7.23□□□□□ -1.25
NUP54-215ENST00000514313 FZD10Q9ULW2 581 aa7.23□□□□□ -1.25
NUP54-215ENST00000514313 LOXL2Q9Y4K0 774 aa7.23□□□□□ -1.25
NUP54-215ENST00000514313 ASTN2O75129 1339 aaPredicted RBP7.23□□□□□ -1.25
NUP54-215ENST00000514313 ATXN2Q99700 1313 aaKnown RBP7.23□□□□□ -1.25
NUP54-215ENST00000514313 INAFM1C9JVW0 142 aa7.22□□□□□ -1.25
NUP54-215ENST00000514313 CCDC188H7C350 402 aa7.22□□□□□ -1.25
NUP54-215ENST00000514313 PLK4O00444 970 aa7.22□□□□□ -1.25
NUP54-215ENST00000514313 WDR46O15213 610 aaKnown RBP7.22□□□□□ -1.25
NUP54-215ENST00000514313 ZBTB43O43298 467 aa7.22□□□□□ -1.25
NUP54-215ENST00000514313 HOXB2P14652 356 aa7.22□□□□□ -1.25
NUP54-215ENST00000514313 KCNA5P22460 613 aa7.22□□□□□ -1.25
NUP54-215ENST00000514313 AMTP48728 403 aa7.22□□□□□ -1.25
NUP54-215ENST00000514313 ACSM1Q08AH1 577 aa7.22□□□□□ -1.25
NUP54-215ENST00000514313 PPIGQ13427 754 aaKnown RBP eCLIP7.22□□□□□ -1.25
NUP54-215ENST00000514313 E2F5Q15329 346 aa7.22□□□□□ -1.25
NUP54-215ENST00000514313 BRAT1Q6PJG6 821 aa7.22□□□□□ -1.25
NUP54-215ENST00000514313 FIGLAQ6QHK4 219 aa7.22□□□□□ -1.25
NUP54-215ENST00000514313 GCSAMQ8N6F7 178 aa7.22□□□□□ -1.25
NUP54-215ENST00000514313 UTP15Q8TED0 518 aaKnown RBP7.22□□□□□ -1.25
NUP54-215ENST00000514313 MR1Q95460 341 aa7.22□□□□□ -1.25
NUP54-215ENST00000514313 FOXP1Q9H334 677 aaPredicted RBP7.22□□□□□ -1.25
NUP54-215ENST00000514313 EBF3Q9H4W6 596 aa7.22□□□□□ -1.25
NUP54-215ENST00000514313 TBC1D17Q9HA65 648 aa7.22□□□□□ -1.25
NUP54-215ENST00000514313 LY6G6EA0A0G2JKS1 128 aa7.21□□□□□ -1.26
NUP54-215ENST00000514313 FEZF1A0PJY2 475 aa7.21□□□□□ -1.26
NUP54-215ENST00000514313 OR6C76A6NM76 312 aa7.21□□□□□ -1.26
NUP54-215ENST00000514313 TRIM77I1YAP6 450 aa7.21□□□□□ -1.26
NUP54-215ENST00000514313 PSMA7O14818 248 aa7.21□□□□□ -1.26
NUP54-215ENST00000514313 TNFRSF13BO14836 293 aaPredicted RBP7.21□□□□□ -1.26
NUP54-215ENST00000514313 SSX4O60224 188 aa7.21□□□□□ -1.26
NUP54-215ENST00000514313 OR52Z1P0C646 297 aa7.21□□□□□ -1.26
NUP54-215ENST00000514313 C21orf33P30042 268 aaPredicted RBP7.21□□□□□ -1.26
NUP54-215ENST00000514313 HOXC13P31276 330 aa7.21□□□□□ -1.26
NUP54-215ENST00000514313 KRT2P35908 639 aa7.21□□□□□ -1.26
NUP54-215ENST00000514313 RFX2P48378 723 aa7.21□□□□□ -1.26
NUP54-215ENST00000514313 CLCNKAP51800 687 aa7.21□□□□□ -1.26
NUP54-215ENST00000514313 RBPJQ06330 500 aa7.21□□□□□ -1.26
NUP54-215ENST00000514313 HSPB3Q12988 150 aa7.21□□□□□ -1.26
NUP54-215ENST00000514313 PTPRCAPQ14761 206 aa7.21□□□□□ -1.26
NUP54-215ENST00000514313 RABEP1Q15276 862 aa7.21□□□□□ -1.26
NUP54-215ENST00000514313 RNASEH2BQ5TBB1 312 aaKnown RBP7.21□□□□□ -1.26
NUP54-215ENST00000514313 PLA2G4FQ68DD2 849 aa7.21□□□□□ -1.26
NUP54-215ENST00000514313 RGMBQ6NW40 437 aa7.21□□□□□ -1.26
NUP54-215ENST00000514313 GPR180Q86V85 440 aa7.21□□□□□ -1.26
NUP54-215ENST00000514313 SLC4A11Q8NBS3 891 aa7.21□□□□□ -1.26
NUP54-215ENST00000514313 OR5R1Q8NH85 324 aa7.21□□□□□ -1.26
NUP54-215ENST00000514313 FRMD4BQ9Y2L6 1034 aa7.21□□□□□ -1.26
NUP54-215ENST00000514313 PTGDR2Q9Y5Y4 395 aa7.21□□□□□ -1.26
NUP54-215ENST00000514313 ZNF804BA4D1E1 1349 aa7.21□□□□□ -1.26
NUP54-215ENST00000514313 A0A1W2PP11 408 aa7.2□□□□□ -1.26
NUP54-215ENST00000514313 HEPACAM2A8MVW5 462 aa7.2□□□□□ -1.26
NUP54-215ENST00000514313 H0YAE9 185 aa7.2□□□□□ -1.26
NUP54-215ENST00000514313 TO15178 435 aa7.2□□□□□ -1.26
NUP54-215ENST00000514313 SYNCRIPO60506 623 aaKnown RBP7.2□□□□□ -1.26
NUP54-215ENST00000514313 CYP11B2P19099 503 aa7.2□□□□□ -1.26
NUP54-215ENST00000514313 BMXP51813 675 aa7.2□□□□□ -1.26
NUP54-215ENST00000514313 CAPZA1P52907 286 aa7.2□□□□□ -1.26
NUP54-215ENST00000514313 CD81P60033 236 aa7.2□□□□□ -1.26
NUP54-215ENST00000514313 CDK3Q00526 305 aa7.2□□□□□ -1.26
NUP54-215ENST00000514313 MZT1Q08AG7 82 aa7.2□□□□□ -1.26
NUP54-215ENST00000514313 KLF9Q13886 244 aaPredicted RBP7.2□□□□□ -1.26
NUP54-215ENST00000514313 COLCA1Q6ZS62 124 aa7.2□□□□□ -1.26
NUP54-215ENST00000514313 MFN1Q8IWA4 741 aa7.2□□□□□ -1.26
NUP54-215ENST00000514313 CCDC170Q8IYT3 715 aa7.2□□□□□ -1.26
NUP54-215ENST00000514313 KCNE4Q8WWG9 221 aa7.2□□□□□ -1.26
NUP54-215ENST00000514313 ZG16BQ96DA0 208 aa7.2□□□□□ -1.26
NUP54-215ENST00000514313 PRMT6Q96LA8 375 aaPredicted RBP7.2□□□□□ -1.26
NUP54-215ENST00000514313 OR6C1Q96RD1 312 aa7.2□□□□□ -1.26
NUP54-215ENST00000514313 CSF3RQ99062 836 aa7.2□□□□□ -1.26
NUP54-215ENST00000514313 MTERF1Q99551 399 aaKnown RBP7.2□□□□□ -1.26
NUP54-215ENST00000514313 FERMT1Q9BQL6 677 aa7.2□□□□□ -1.26
NUP54-215ENST00000514313 C16orf70Q9BSU1 422 aa7.2□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 93.3 ms