RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 NSG1P42857 185 aa14.76□□□□□ -0.05
NUP54-213ENST00000513352 PMS2P54278 862 aa14.76□□□□□ -0.05
NUP54-213ENST00000513352 MPP1Q00013 466 aa14.76□□□□□ -0.05
NUP54-213ENST00000513352 ILF3Q12906 894 aaKnown RBP eCLIP14.76□□□□□ -0.05
NUP54-213ENST00000513352 BNIP3Q12983 259 aa14.76□□□□□ -0.05
NUP54-213ENST00000513352 TYSND1Q2T9J0 566 aa14.76□□□□□ -0.05
NUP54-213ENST00000513352 UAP1L1Q3KQV9 507 aa14.76□□□□□ -0.05
NUP54-213ENST00000513352 PYCR3Q53H96 274 aa14.76□□□□□ -0.05
NUP54-213ENST00000513352 PTRHD1Q6GMV3 140 aaKnown RBP14.76□□□□□ -0.05
NUP54-213ENST00000513352 PACS1Q6VY07 963 aa14.76□□□□□ -0.05
NUP54-213ENST00000513352 CTAGE3PQ8IX95 158 aa14.76□□□□□ -0.05
NUP54-213ENST00000513352 CLDN19Q8N6F1 224 aa14.76□□□□□ -0.05
NUP54-213ENST00000513352 UHMK1Q8TAS1 419 aaKnown RBP14.76□□□□□ -0.05
NUP54-213ENST00000513352 FBF1Q8TES7 1133 aa14.76□□□□□ -0.05
NUP54-213ENST00000513352 TCF12Q99081 682 aa14.76□□□□□ -0.05
NUP54-213ENST00000513352 LRRC61Q9BV99 259 aa14.76□□□□□ -0.05
NUP54-213ENST00000513352 TMEM168Q9H0V1 697 aa14.76□□□□□ -0.05
NUP54-213ENST00000513352 CCDC68Q9H2F9 335 aa14.76□□□□□ -0.05
NUP54-213ENST00000513352 OSGEPL1Q9H4B0 414 aa14.76□□□□□ -0.05
NUP54-213ENST00000513352 TMEM9BQ9NQ34 198 aa14.76□□□□□ -0.05
NUP54-213ENST00000513352 TM7SF3Q9NS93 570 aa14.76□□□□□ -0.05
NUP54-213ENST00000513352 INTS10Q9NVR2 710 aaKnown RBP14.76□□□□□ -0.05
NUP54-213ENST00000513352 VPS9D1Q9Y2B5 631 aa14.76□□□□□ -0.05
NUP54-213ENST00000513352 DNAJC16Q9Y2G8 782 aa14.76□□□□□ -0.05
NUP54-213ENST00000513352 CRYL1Q9Y2S2 319 aa14.76□□□□□ -0.05
NUP54-213ENST00000513352 PCYT1BQ9Y5K3 369 aaPredicted RBP14.76□□□□□ -0.05
NUP54-213ENST00000513352 ZFC3H1O60293 1989 aaKnown RBP14.76□□□□□ -0.05
NUP54-213ENST00000513352 ZFHX2Q9C0A1 2572 aaPredicted RBP14.75□□□□□ -0.05
NUP54-213ENST00000513352 F8W8V4 182 aa14.75□□□□□ -0.05
NUP54-213ENST00000513352 PRMT5O14744 637 aaPredicted RBP14.75□□□□□ -0.05
NUP54-213ENST00000513352 FFAR2O15552 330 aa14.75□□□□□ -0.05
NUP54-213ENST00000513352 AQP9O43315 295 aa14.75□□□□□ -0.05
NUP54-213ENST00000513352 FOXD2O60548 495 aaPredicted RBP14.75□□□□□ -0.05
NUP54-213ENST00000513352 PIAS1O75925 651 aa14.75□□□□□ -0.05
NUP54-213ENST00000513352 PIAS2O75928 621 aa14.75□□□□□ -0.05
NUP54-213ENST00000513352 AP2A2O94973 939 aa14.75□□□□□ -0.05
NUP54-213ENST00000513352 OR56A5P0C7T3 313 aa14.75□□□□□ -0.05
NUP54-213ENST00000513352 ITGB6P18564 788 aa14.75□□□□□ -0.05
NUP54-213ENST00000513352 EPHA8P29322 1005 aaPredicted RBP14.75□□□□□ -0.05
NUP54-213ENST00000513352 FMO4P31512 558 aa14.75□□□□□ -0.05
NUP54-213ENST00000513352 RXRGP48443 463 aa14.75□□□□□ -0.05
NUP54-213ENST00000513352 FRG1Q14331 258 aaKnown RBP14.75□□□□□ -0.05
NUP54-213ENST00000513352 ELOCQ15369 112 aa14.75□□□□□ -0.05
NUP54-213ENST00000513352 UBAP2Q5T6F2 1119 aaKnown RBP14.75□□□□□ -0.05
NUP54-213ENST00000513352 TEDDM1Q5T9Z0 273 aa14.75□□□□□ -0.05
NUP54-213ENST00000513352 WDR93Q6P2C0 686 aa14.75□□□□□ -0.05
NUP54-213ENST00000513352 TAF8Q7Z7C8 310 aa14.75□□□□□ -0.05
NUP54-213ENST00000513352 GATAD2AQ86YP4 633 aa14.75□□□□□ -0.05
NUP54-213ENST00000513352 RELL1Q8IUW5 271 aa14.75□□□□□ -0.05
NUP54-213ENST00000513352 BEND7Q8N7W2 519 aaPredicted RBP14.75□□□□□ -0.05
NUP54-213ENST00000513352 ZNF548Q8NEK5 533 aaPredicted RBP14.75□□□□□ -0.05
NUP54-213ENST00000513352 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP14.75□□□□□ -0.05
NUP54-213ENST00000513352 SCARF2Q96GP6 870 aaPredicted RBP14.75□□□□□ -0.05
NUP54-213ENST00000513352 ZNF514Q96K75 400 aaPredicted RBP14.75□□□□□ -0.05
NUP54-213ENST00000513352 RXFP3Q9NSD7 469 aa14.75□□□□□ -0.05
NUP54-213ENST00000513352 UCKL1Q9NWZ5 548 aa14.75□□□□□ -0.05
NUP54-213ENST00000513352 MOCS1Q9NZB8 636 aa14.75□□□□□ -0.05
NUP54-213ENST00000513352 TXNDC16Q9P2K2 825 aa14.75□□□□□ -0.05
NUP54-213ENST00000513352 GNPTGQ9UJJ9 305 aa14.75□□□□□ -0.05
NUP54-213ENST00000513352 KCNK6Q9Y257 313 aa14.75□□□□□ -0.05
NUP54-213ENST00000513352 PLEKHM1Q9Y4G2 1056 aa14.75□□□□□ -0.05
NUP54-213ENST00000513352 PRSS21Q9Y6M0 314 aa14.75□□□□□ -0.05
NUP54-213ENST00000513352 FRYLO94915 3013 aa14.74□□□□□ -0.05
NUP54-213ENST00000513352 QSOX1O00391 747 aa14.74□□□□□ -0.05
NUP54-213ENST00000513352 CHUKO15111 745 aa14.74□□□□□ -0.05
NUP54-213ENST00000513352 S1PR4O95977 384 aa14.74□□□□□ -0.05
NUP54-213ENST00000513352 FTH1P02794 183 aa14.74□□□□□ -0.05
NUP54-213ENST00000513352 ANXA6P08133 673 aa14.74□□□□□ -0.05
NUP54-213ENST00000513352 CELA2BP08218 269 aaPredicted RBP14.74□□□□□ -0.05
NUP54-213ENST00000513352 VCLP18206 1134 aa14.74□□□□□ -0.05
NUP54-213ENST00000513352 DGKAP23743 735 aa14.74□□□□□ -0.05
NUP54-213ENST00000513352 AK4P27144 223 aaPredicted RBP14.74□□□□□ -0.05
NUP54-213ENST00000513352 ACTR1BP42025 376 aa14.74□□□□□ -0.05
NUP54-213ENST00000513352 ABCG1P45844 678 aa14.74□□□□□ -0.05
NUP54-213ENST00000513352 PRLHRP49683 370 aa14.74□□□□□ -0.05
NUP54-213ENST00000513352 ACTR1AP61163 376 aa14.74□□□□□ -0.05
NUP54-213ENST00000513352 CTBSQ01459 385 aa14.74□□□□□ -0.05
NUP54-213ENST00000513352 EFTUD2Q15029 972 aaKnown RBP eCLIP14.74□□□□□ -0.05
NUP54-213ENST00000513352 SHBQ15464 509 aa14.74□□□□□ -0.05
NUP54-213ENST00000513352 BCL7AQ4VC05 210 aa14.74□□□□□ -0.05
NUP54-213ENST00000513352 ZNF789Q5FWF6 425 aa14.74□□□□□ -0.05
NUP54-213ENST00000513352 SLC30A9Q6PML9 568 aa14.74□□□□□ -0.05
NUP54-213ENST00000513352 TRMT10CQ7L0Y3 403 aaKnown RBP14.74□□□□□ -0.05
NUP54-213ENST00000513352 LRRC6Q86X45 466 aa14.74□□□□□ -0.05
NUP54-213ENST00000513352 GKN2Q86XP6 184 aa14.74□□□□□ -0.05
NUP54-213ENST00000513352 ZNF547Q8IVP9 402 aa14.74□□□□□ -0.05
NUP54-213ENST00000513352 KIAA2013Q8IYS2 634 aa14.74□□□□□ -0.05
NUP54-213ENST00000513352 FSTL5Q8N475 847 aaPredicted RBP14.74□□□□□ -0.05
NUP54-213ENST00000513352 PPM1NQ8N819 430 aa14.74□□□□□ -0.05
NUP54-213ENST00000513352 C2CD4AQ8NCU7 369 aaPredicted RBP14.74□□□□□ -0.05
NUP54-213ENST00000513352 CCL4L1Q8NHW4 92 aa14.74□□□□□ -0.05
NUP54-213ENST00000513352 UBLCP1Q8WVY7 318 aaPredicted RBP14.74□□□□□ -0.05
NUP54-213ENST00000513352 LPGAT1Q92604 370 aa14.74□□□□□ -0.05
NUP54-213ENST00000513352 MRRFQ96E11 262 aaKnown RBP14.74□□□□□ -0.05
NUP54-213ENST00000513352 ATXN7L3BQ96GX2 97 aa14.74□□□□□ -0.05
NUP54-213ENST00000513352 TSSK1BQ9BXA7 367 aa14.74□□□□□ -0.05
NUP54-213ENST00000513352 GSDMCQ9BYG8 508 aa14.74□□□□□ -0.05
NUP54-213ENST00000513352 KLC4Q9NSK0 619 aa14.74□□□□□ -0.05
NUP54-213ENST00000513352 NSMCE4AQ9NXX6 385 aa14.74□□□□□ -0.05
NUP54-213ENST00000513352 FAM186AA6NE01 2351 aa14.74□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 117.8 ms