RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 TTLL10Q6ZVT0 673 aa9.11□□□□□ -0.95
LIMCH1-202ENST00000381753 CNEP1R1Q8N9A8 125 aa9.11□□□□□ -0.95
LIMCH1-202ENST00000381753 CCDC54Q8NEL0 328 aa9.11□□□□□ -0.95
LIMCH1-202ENST00000381753 RP9Q8TA86 221 aaKnown RBP9.11□□□□□ -0.95
LIMCH1-202ENST00000381753 GFM2Q969S9 779 aaKnown RBP9.11□□□□□ -0.95
LIMCH1-202ENST00000381753 TRIM43Q96BQ3 446 aaPredicted RBP9.11□□□□□ -0.95
LIMCH1-202ENST00000381753 CRB3Q9BUF7 120 aa9.11□□□□□ -0.95
LIMCH1-202ENST00000381753 B3GNT5Q9BYG0 378 aa9.11□□□□□ -0.95
LIMCH1-202ENST00000381753 OR8D2Q9GZM6 311 aa9.11□□□□□ -0.95
LIMCH1-202ENST00000381753 LMBRD1Q9NUN5 540 aa9.11□□□□□ -0.95
LIMCH1-202ENST00000381753 PCDHB1Q9Y5F3 818 aa9.11□□□□□ -0.95
LIMCH1-202ENST00000381753 MGRN1O60291 552 aa9.11□□□□□ -0.95
LIMCH1-202ENST00000381753 WDPCPO95876 746 aa9.11□□□□□ -0.95
LIMCH1-202ENST00000381753 EDN1P05305 212 aa9.11□□□□□ -0.95
LIMCH1-202ENST00000381753 TPOP07202 933 aa9.11□□□□□ -0.95
LIMCH1-202ENST00000381753 CPA3P15088 417 aa9.11□□□□□ -0.95
LIMCH1-202ENST00000381753 RYKP34925 604 aa9.11□□□□□ -0.95
LIMCH1-202ENST00000381753 ARSFP54793 590 aa9.11□□□□□ -0.95
LIMCH1-202ENST00000381753 TUBB3Q13509 450 aa9.11□□□□□ -0.95
LIMCH1-202ENST00000381753 MAPK14Q16539 360 aa9.11□□□□□ -0.95
LIMCH1-202ENST00000381753 BTBD16Q32M84 506 aa9.11□□□□□ -0.95
LIMCH1-202ENST00000381753 KLHL1Q9NR64 748 aa9.11□□□□□ -0.95
LIMCH1-202ENST00000381753 GNEQ9Y223 722 aaKnown RBP9.11□□□□□ -0.95
LIMCH1-202ENST00000381753 PCDHA3Q9Y5H8 950 aa9.11□□□□□ -0.95
LIMCH1-202ENST00000381753 TNFRSF10BO14763 440 aa9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 LRATO95237 230 aa9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 KCNH1O95259 989 aa9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 CYP1A2P05177 515 aa9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 CDK4P11802 303 aa9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 PGAM1P18669 254 aa9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 ADSLP30566 484 aaPredicted RBP9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 CPOXP36551 454 aa9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 GABREP78334 506 aa9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 STK11Q15831 433 aa9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 RTP2Q5QGT7 225 aa9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 RAET1LQ5VY80 246 aa9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 AGGF1Q8N302 714 aaeCLIP9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 TCAIMQ8N3R3 496 aa9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 STAG3L4Q8TBR4 150 aa9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 SPPL3Q8TCT6 385 aa9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 BCAS4Q8TDM0 211 aa9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 PSMG2Q969U7 264 aa9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 PPCDCQ96CD2 204 aa9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 FBXO6Q9NRD1 293 aaPredicted RBP9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 H0Y3Z8 333 aa9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 NDUFS4O43181 175 aa9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 POP7O75817 140 aaKnown RBP9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 LYPLA2O95372 231 aa9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 CRYBA1P05813 215 aa9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 S100A3P33764 101 aa9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 SHMT2P34897 504 aa9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 NDST2P52849 883 aa9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 PLA2G16P53816 162 aa9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 FAM78AQ5JUQ0 283 aa9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 TANGO2Q6ICL3 276 aa9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 FIP1L1Q6UN15 594 aaKnown RBP9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 TRMT2AQ8IZ69 625 aaKnown RBP9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 TTLQ8NG68 377 aa9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 OR5L2Q8NGL0 311 aa9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 TPD52L3Q96J77 140 aa9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 ZSWIM3Q96MP5 696 aa9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 DCDC2Q9UHG0 476 aa9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 CAMK2AQ9UQM7 478 aa9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 DDX3XO00571 662 aaKnown RBP eCLIP9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 PRMT5O14744 637 aaPredicted RBP9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 COCHO43405 550 aa9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 AHCYP23526 432 aa9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 WNT3AP56704 352 aa9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 DUSP6Q16828 381 aa9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 HSF5Q4G112 596 aaPredicted RBP9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 TMEM119Q4V9L6 283 aa9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 ZNF805Q5CZA5 627 aa9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 JAZF1Q86VZ6 243 aa9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 ZC3H7AQ8IWR0 971 aaKnown RBP9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 SAMD14Q8IZD0 417 aaPredicted RBP9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 OR2AJ1Q8NGZ0 328 aa9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 LRIG1Q96JA1 1093 aa9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 SLC24A3Q9HC58 644 aa9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 LRIT1Q9P2V4 623 aa9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 XRN1Q8IZH2 1706 aaKnown RBP9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 LEFTY1O75610 366 aa9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 KRT75O95678 551 aa9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 GZMAP12544 262 aa9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 MAGEA11P43364 429 aa9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 ZNF33BQ06732 778 aa9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 RFTN1Q14699 578 aaPredicted RBP9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 USP49Q70CQ1 688 aa9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 P3H2Q8IVL5 708 aa9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 MINDY1Q8N5J2 469 aa9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 TSPAN14Q8NG11 270 aa9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 OR14L1PQ8NHC6 308 aa9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 WDR36Q8NI36 951 aaKnown RBP9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 C9orf72Q96LT7 481 aa9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 FRMD6Q96NE9 622 aa9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 TRIM4Q9C037 500 aa9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 IL22Q9GZX6 179 aa9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 SLITRK2Q9H156 845 aa9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 TMEM27Q9HBJ8 222 aa9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 SEMA4BQ9NPR2 832 aaPredicted RBP9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 STMN3Q9NZ72 180 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms