RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 NAP1L1P55209 391 aaKnown RBP18.8■□□□□ 0.6
CCDC28A-203ENST00000617445 UBE2IP63279 158 aaKnown RBP18.8■□□□□ 0.6
CCDC28A-203ENST00000617445 GTF2H3Q13889 308 aa18.8■□□□□ 0.6
CCDC28A-203ENST00000617445 NOMO1Q15155 1222 aa18.8■□□□□ 0.6
CCDC28A-203ENST00000617445 TGIF1Q15583 401 aa18.8■□□□□ 0.6
CCDC28A-203ENST00000617445 ARHGAP22Q7Z5H3 698 aa18.8■□□□□ 0.6
CCDC28A-203ENST00000617445 ZFAND4Q86XD8 727 aa18.8■□□□□ 0.6
CCDC28A-203ENST00000617445 ZNF761Q86XN6 746 aaPredicted RBP18.8■□□□□ 0.6
CCDC28A-203ENST00000617445 PLXDC1Q8IUK5 500 aa18.8■□□□□ 0.6
CCDC28A-203ENST00000617445 TTC30BQ8N4P2 665 aa18.8■□□□□ 0.6
CCDC28A-203ENST00000617445 IPMKQ8NFU5 416 aa18.8■□□□□ 0.6
CCDC28A-203ENST00000617445 NCSTNQ92542 709 aa18.8■□□□□ 0.6
CCDC28A-203ENST00000617445 HAUS1Q96CS2 278 aa18.8■□□□□ 0.6
CCDC28A-203ENST00000617445 SGF29Q96ES7 293 aa18.8■□□□□ 0.6
CCDC28A-203ENST00000617445 OXNAD1Q96HP4 312 aaPredicted RBP18.8■□□□□ 0.6
CCDC28A-203ENST00000617445 TTC25Q96NG3 672 aa18.8■□□□□ 0.6
CCDC28A-203ENST00000617445 PPP1R2P1Q96PQ5 205 aa18.8■□□□□ 0.6
CCDC28A-203ENST00000617445 TEFMQ96QE5 360 aaKnown RBP18.8■□□□□ 0.6
CCDC28A-203ENST00000617445 HEMGNQ9BXL5 484 aa18.8■□□□□ 0.6
CCDC28A-203ENST00000617445 FSD1LQ9BXM9 530 aa18.8■□□□□ 0.6
CCDC28A-203ENST00000617445 OSGEPL1Q9H4B0 414 aa18.8■□□□□ 0.6
CCDC28A-203ENST00000617445 BPIFA1Q9NP55 256 aa18.8■□□□□ 0.6
CCDC28A-203ENST00000617445 ARFGAP3Q9NP61 516 aa18.8■□□□□ 0.6
CCDC28A-203ENST00000617445 IL26Q9NPH9 171 aa18.8■□□□□ 0.6
CCDC28A-203ENST00000617445 PRDM8Q9NQV8 689 aa18.8■□□□□ 0.6
CCDC28A-203ENST00000617445 WDR70Q9NW82 654 aa18.8■□□□□ 0.6
CCDC28A-203ENST00000617445 IL17CQ9P0M4 197 aa18.8■□□□□ 0.6
CCDC28A-203ENST00000617445 RSPH14Q9UHP6 348 aa18.8■□□□□ 0.6
CCDC28A-203ENST00000617445 TFR2Q9UP52 801 aa18.8■□□□□ 0.6
CCDC28A-203ENST00000617445 PKP3Q9Y446 797 aa18.8■□□□□ 0.6
CCDC28A-203ENST00000617445 SDK2Q58EX2 2172 aa18.8■□□□□ 0.6
CCDC28A-203ENST00000617445 SOWAHDA6NJG2 315 aa18.79■□□□□ 0.6
CCDC28A-203ENST00000617445 C1QL1O75973 258 aa18.79■□□□□ 0.6
CCDC28A-203ENST00000617445 STK10O94804 968 aaKnown RBP18.79■□□□□ 0.6
CCDC28A-203ENST00000617445 PRB1P04280 392 aa18.79■□□□□ 0.6
CCDC28A-203ENST00000617445 CTNNA2P26232 953 aa18.79■□□□□ 0.6
CCDC28A-203ENST00000617445 SPAM1P38567 509 aa18.79■□□□□ 0.6
CCDC28A-203ENST00000617445 ATP1A2P50993 1020 aa18.79■□□□□ 0.6
CCDC28A-203ENST00000617445 RWDD2BP57060 319 aa18.79■□□□□ 0.6
CCDC28A-203ENST00000617445 TMEM115Q12893 351 aaPredicted RBP18.79■□□□□ 0.6
CCDC28A-203ENST00000617445 ITGA9Q13797 1035 aa18.79■□□□□ 0.6
CCDC28A-203ENST00000617445 ATP13A5Q4VNC0 1218 aa18.79■□□□□ 0.6
CCDC28A-203ENST00000617445 LDLRAP1Q5SW96 308 aa18.79■□□□□ 0.6
CCDC28A-203ENST00000617445 ZNF648Q5T619 568 aaPredicted RBP18.79■□□□□ 0.6
CCDC28A-203ENST00000617445 DCAF12Q5T6F0 453 aa18.79■□□□□ 0.6
CCDC28A-203ENST00000617445 AGAP9Q5VTM2 703 aa18.79■□□□□ 0.6
CCDC28A-203ENST00000617445 CRTC3Q6UUV7 619 aa18.79■□□□□ 0.6
CCDC28A-203ENST00000617445 ABRAXAS1Q6UWZ7 409 aa18.79■□□□□ 0.6
CCDC28A-203ENST00000617445 GLT6D1Q7Z4J2 308 aa18.79■□□□□ 0.6
CCDC28A-203ENST00000617445 RBM12BQ8IXT5 1001 aaKnown RBP18.79■□□□□ 0.6
CCDC28A-203ENST00000617445 TXLNBQ8N3L3 684 aa18.79■□□□□ 0.6
CCDC28A-203ENST00000617445 SLC25A41Q8N5S1 370 aa18.79■□□□□ 0.6
CCDC28A-203ENST00000617445 ZPBPQ9BS86 351 aa18.79■□□□□ 0.6
CCDC28A-203ENST00000617445 OSBPL8Q9BZF1 889 aa18.79■□□□□ 0.6
CCDC28A-203ENST00000617445 GBA3Q9H227 469 aa18.79■□□□□ 0.6
CCDC28A-203ENST00000617445 SLC39A1Q9NY26 324 aa18.79■□□□□ 0.6
CCDC28A-203ENST00000617445 TMEM9Q9P0T7 183 aa18.79■□□□□ 0.6
CCDC28A-203ENST00000617445 SLC23A2Q9UGH3 650 aa18.79■□□□□ 0.6
CCDC28A-203ENST00000617445 AAR2Q9Y312 384 aaKnown RBP18.79■□□□□ 0.6
CCDC28A-203ENST00000617445 DNMT3AQ9Y6K1 912 aaPredicted RBP18.79■□□□□ 0.6
CCDC28A-203ENST00000617445 GCN1Q92616 2671 aaKnown RBP18.79■□□□□ 0.6
CCDC28A-203ENST00000617445 PRR19A6NJB7 356 aa18.78■□□□□ 0.6
CCDC28A-203ENST00000617445 TJP3O95049 919 aa18.78■□□□□ 0.6
CCDC28A-203ENST00000617445 VIPP01282 170 aa18.78■□□□□ 0.6
CCDC28A-203ENST00000617445 ITGB2P05107 769 aa18.78■□□□□ 0.6
CCDC28A-203ENST00000617445 IDSP22304 550 aa18.78■□□□□ 0.6
CCDC28A-203ENST00000617445 MPSTP25325 297 aa18.78■□□□□ 0.6
CCDC28A-203ENST00000617445 RBL1P28749 1068 aa18.78■□□□□ 0.6
CCDC28A-203ENST00000617445 TMEM26Q6ZUK4 368 aa18.78■□□□□ 0.6
CCDC28A-203ENST00000617445 ZNF547Q8IVP9 402 aa18.78■□□□□ 0.6
CCDC28A-203ENST00000617445 CDKL3Q8IVW4 592 aaPredicted RBP18.78■□□□□ 0.6
CCDC28A-203ENST00000617445 TRIM48Q8IWZ4 208 aa18.78■□□□□ 0.6
CCDC28A-203ENST00000617445 ZNF843Q8N446 348 aa18.78■□□□□ 0.6
CCDC28A-203ENST00000617445 GDAP1Q8TB36 358 aa18.78■□□□□ 0.6
CCDC28A-203ENST00000617445 BLOC1S5Q8TDH9 187 aa18.78■□□□□ 0.6
CCDC28A-203ENST00000617445 ART4Q93070 314 aa18.78■□□□□ 0.6
CCDC28A-203ENST00000617445 POT1Q9NUX5 634 aa18.78■□□□□ 0.6
CCDC28A-203ENST00000617445 TMPRSS11EQ9UL52 423 aa18.78■□□□□ 0.6
CCDC28A-203ENST00000617445 ZNF462Q96JM2 2506 aa18.77■□□□□ 0.6
CCDC28A-203ENST00000617445 GLYATL1P3A0A0U1RQE8 302 aa18.77■□□□□ 0.6
CCDC28A-203ENST00000617445 RCCD1A6NED2 376 aa18.77■□□□□ 0.6
CCDC28A-203ENST00000617445 EFCAB7A8K855 629 aa18.77■□□□□ 0.6
CCDC28A-203ENST00000617445 PDZK1P1A8MUH7 402 aa18.77■□□□□ 0.6
CCDC28A-203ENST00000617445 PJA2O43164 708 aa18.77■□□□□ 0.6
CCDC28A-203ENST00000617445 MTX2O75431 263 aa18.77■□□□□ 0.6
CCDC28A-203ENST00000617445 CHRNA4P43681 627 aa18.77■□□□□ 0.6
CCDC28A-203ENST00000617445 MC2RQ01718 297 aa18.77■□□□□ 0.6
CCDC28A-203ENST00000617445 PRPSAP1Q14558 356 aa18.77■□□□□ 0.6
CCDC28A-203ENST00000617445 KIAA1614Q5VZ46 1190 aa18.77■□□□□ 0.6
CCDC28A-203ENST00000617445 FAM129CQ86XR2 697 aa18.77■□□□□ 0.6
CCDC28A-203ENST00000617445 TRAPPC5Q8IUR0 188 aa18.77■□□□□ 0.6
CCDC28A-203ENST00000617445 ACTL9Q8TC94 416 aa18.77■□□□□ 0.6
CCDC28A-203ENST00000617445 LRRC45Q96CN5 670 aa18.77■□□□□ 0.6
CCDC28A-203ENST00000617445 RBSNQ9H1K0 784 aa18.77■□□□□ 0.6
CCDC28A-203ENST00000617445 FBXO8Q9NRD0 319 aa18.77■□□□□ 0.6
CCDC28A-203ENST00000617445 OCIAD1Q9NX40 245 aa18.77■□□□□ 0.6
CCDC28A-203ENST00000617445 B3GALT1Q9Y5Z6 326 aa18.77■□□□□ 0.6
CCDC28A-203ENST00000617445 DUSP10Q9Y6W6 482 aa18.77■□□□□ 0.6
CCDC28A-203ENST00000617445 KLHL33A6NCF5 533 aa18.76■□□□□ 0.59
CCDC28A-203ENST00000617445 C5orf60A6NFR6 353 aa18.76■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms