RNA–Protein interactions for RNA: ENST00000261058.2

CCDC54-201, Transcript of coiled-coil domain containing 54, humanhuman

APPRIS P1 BASIC

Gene CCDC54, Length 1,444 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54-201ENST00000261058 LOC102723996A0A087X1L8 192 aa4.35□□□□□ -1.71
CCDC54-201ENST00000261058 A0A1W2PRQ8 180 aa4.35□□□□□ -1.71
CCDC54-201ENST00000261058 LRRC72A6NJI9 287 aa4.35□□□□□ -1.71
CCDC54-201ENST00000261058 HS3ST1O14792 307 aa4.35□□□□□ -1.71
CCDC54-201ENST00000261058 PLPP2O43688 288 aa4.35□□□□□ -1.71
CCDC54-201ENST00000261058 ZNF217O75362 1048 aa4.35□□□□□ -1.71
CCDC54-201ENST00000261058 GH2P01242 217 aa4.35□□□□□ -1.71
CCDC54-201ENST00000261058 PLA2G2AP14555 144 aa4.35□□□□□ -1.71
CCDC54-201ENST00000261058 HRH2P25021 359 aa4.35□□□□□ -1.71
CCDC54-201ENST00000261058 TNFRSF8P28908 595 aa4.35□□□□□ -1.71
CCDC54-201ENST00000261058 PEX5P50542 639 aa4.35□□□□□ -1.71
CCDC54-201ENST00000261058 GRAPQ13588 217 aa4.35□□□□□ -1.71
CCDC54-201ENST00000261058 DLG2Q15700 870 aa4.35□□□□□ -1.71
CCDC54-201ENST00000261058 FAM109BQ6ICB4 259 aaPredicted RBP4.35□□□□□ -1.71
CCDC54-201ENST00000261058 TRNP1Q6NT89 227 aa4.35□□□□□ -1.71
CCDC54-201ENST00000261058 GFRALQ6UXV0 394 aa4.35□□□□□ -1.71
CCDC54-201ENST00000261058 CREB3L2Q70SY1 520 aa4.35□□□□□ -1.71
CCDC54-201ENST00000261058 TMEM219Q86XT9 240 aa4.35□□□□□ -1.71
CCDC54-201ENST00000261058 PM20D2Q8IYS1 436 aa4.35□□□□□ -1.71
CCDC54-201ENST00000261058 OR8H2Q8N162 312 aa4.35□□□□□ -1.71
CCDC54-201ENST00000261058 SMRP1Q8NCR6 262 aa4.35□□□□□ -1.71
CCDC54-201ENST00000261058 LILRB1Q8NHL6 650 aaPredicted RBP4.35□□□□□ -1.71
CCDC54-201ENST00000261058 HMGCLL1Q8TB92 370 aa4.35□□□□□ -1.71
CCDC54-201ENST00000261058 QRFPRQ96P65 431 aa4.35□□□□□ -1.71
CCDC54-201ENST00000261058 PAFAH2Q99487 392 aa4.35□□□□□ -1.71
CCDC54-201ENST00000261058 MTERF1Q99551 399 aaKnown RBP4.35□□□□□ -1.71
CCDC54-201ENST00000261058 ZPBPQ9BS86 351 aa4.35□□□□□ -1.71
CCDC54-201ENST00000261058 CENPOQ9BU64 300 aa4.35□□□□□ -1.71
CCDC54-201ENST00000261058 KIFC3Q9BVG8 833 aa4.35□□□□□ -1.71
CCDC54-201ENST00000261058 DENND2DQ9H6A0 471 aaPredicted RBP4.35□□□□□ -1.71
CCDC54-201ENST00000261058 EBF2Q9HAK2 575 aa4.35□□□□□ -1.71
CCDC54-201ENST00000261058 MRPL15Q9P015 296 aaKnown RBP4.35□□□□□ -1.71
CCDC54-201ENST00000261058 TSPYL4Q9UJ04 414 aa4.35□□□□□ -1.71
CCDC54-201ENST00000261058 DBNLQ9UJU6 430 aaKnown RBP4.35□□□□□ -1.71
CCDC54-201ENST00000261058 AMDHD2Q9Y303 409 aa4.35□□□□□ -1.71
CCDC54-201ENST00000261058 ASTN2O75129 1339 aaPredicted RBP4.35□□□□□ -1.71
CCDC54-201ENST00000261058 PDS5AQ29RF7 1337 aaKnown RBP4.35□□□□□ -1.71
CCDC54-201ENST00000261058 LOC100509620A0A075B734 347 aa4.34□□□□□ -1.71
CCDC54-201ENST00000261058 LACTBL1A8MY62 500 aa4.34□□□□□ -1.71
CCDC54-201ENST00000261058 SLC28A2O43868 658 aa4.34□□□□□ -1.71
CCDC54-201ENST00000261058 PLOD3O60568 738 aa4.34□□□□□ -1.71
CCDC54-201ENST00000261058 SNHG28P0DPA3 235 aa4.34□□□□□ -1.71
CCDC54-201ENST00000261058 HLA-DOBP13765 273 aa4.34□□□□□ -1.71
CCDC54-201ENST00000261058 SAT1P21673 171 aa4.34□□□□□ -1.71
CCDC54-201ENST00000261058 KCNA5P22460 613 aa4.34□□□□□ -1.71
CCDC54-201ENST00000261058 CCKBRP32239 447 aa4.34□□□□□ -1.71
CCDC54-201ENST00000261058 NUCB1Q02818 461 aa4.34□□□□□ -1.71
CCDC54-201ENST00000261058 CFAP58Q5T655 872 aa4.34□□□□□ -1.71
CCDC54-201ENST00000261058 CASC1Q6TDU7 716 aa4.34□□□□□ -1.71
CCDC54-201ENST00000261058 ZNF517Q6ZMY9 492 aaPredicted RBP4.34□□□□□ -1.71
CCDC54-201ENST00000261058 ZNF534Q76KX8 674 aa4.34□□□□□ -1.71
CCDC54-201ENST00000261058 C16orf82Q7Z2V1 217 aa4.34□□□□□ -1.71
CCDC54-201ENST00000261058 CCDC190Q86UF4 302 aa4.34□□□□□ -1.71
CCDC54-201ENST00000261058 CREBRFQ8IUR6 639 aa4.34□□□□□ -1.71
CCDC54-201ENST00000261058 MINDY1Q8N5J2 469 aa4.34□□□□□ -1.71
CCDC54-201ENST00000261058 DNAAF4Q8WXU2 420 aa4.34□□□□□ -1.71
CCDC54-201ENST00000261058 PIGTQ969N2 578 aa4.34□□□□□ -1.71
CCDC54-201ENST00000261058 RTP4Q96DX8 246 aa4.34□□□□□ -1.71
CCDC54-201ENST00000261058 BICD1Q96G01 975 aa4.34□□□□□ -1.71
CCDC54-201ENST00000261058 TSPAN18Q96SJ8 248 aa4.34□□□□□ -1.71
CCDC54-201ENST00000261058 SLF1Q9BQI6 1058 aa4.34□□□□□ -1.71
CCDC54-201ENST00000261058 TM6SF1Q9BZW5 370 aa4.34□□□□□ -1.71
CCDC54-201ENST00000261058 DDX31Q9H8H2 851 aaKnown RBP4.34□□□□□ -1.71
CCDC54-201ENST00000261058 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP4.34□□□□□ -1.71
CCDC54-201ENST00000261058 KLHL1Q9NR64 748 aa4.34□□□□□ -1.71
CCDC54-201ENST00000261058 CWC25Q9NXE8 425 aaPredicted RBP4.34□□□□□ -1.71
CCDC54-201ENST00000261058 ARHGEF38Q9NXL2 777 aa4.34□□□□□ -1.71
CCDC54-201ENST00000261058 KLHL20Q9Y2M5 609 aa4.34□□□□□ -1.71
CCDC54-201ENST00000261058 DOCK7Q96N67 2140 aa4.33□□□□□ -1.72
CCDC54-201ENST00000261058 CGNL1Q0VF96 1302 aa4.33□□□□□ -1.72
CCDC54-201ENST00000261058 MAGEA13PA6NCF6 341 aa4.33□□□□□ -1.72
CCDC54-201ENST00000261058 C4orf47A7E2U8 309 aa4.33□□□□□ -1.72
CCDC54-201ENST00000261058 LDB3O75112 727 aa4.33□□□□□ -1.72
CCDC54-201ENST00000261058 AVILO75366 819 aa4.33□□□□□ -1.72
CCDC54-201ENST00000261058 RSL1D1O76021 490 aaKnown RBP4.33□□□□□ -1.72
CCDC54-201ENST00000261058 WISP2O76076 250 aa4.33□□□□□ -1.72
CCDC54-201ENST00000261058 CAMTA2O94983 1202 aa4.33□□□□□ -1.72
CCDC54-201ENST00000261058 MYOD1P15172 320 aa4.33□□□□□ -1.72
CCDC54-201ENST00000261058 TMPOP42166 694 aaKnown RBP4.33□□□□□ -1.72
CCDC54-201ENST00000261058 STAT2P52630 851 aa4.33□□□□□ -1.72
CCDC54-201ENST00000261058 TERF1P54274 439 aa4.33□□□□□ -1.72
CCDC54-201ENST00000261058 RRP1P56182 461 aaKnown RBP4.33□□□□□ -1.72
CCDC54-201ENST00000261058 PDE1BQ01064 536 aa4.33□□□□□ -1.72
CCDC54-201ENST00000261058 SLC20A2Q08357 652 aa4.33□□□□□ -1.72
CCDC54-201ENST00000261058 ILF3Q12906 894 aaKnown RBP eCLIP4.33□□□□□ -1.72
CCDC54-201ENST00000261058 GAGE2BQ13066 116 aa4.33□□□□□ -1.72
CCDC54-201ENST00000261058 SNTA1Q13424 505 aa4.33□□□□□ -1.72
CCDC54-201ENST00000261058 GAGE2EQ4V326 116 aa4.33□□□□□ -1.72
CCDC54-201ENST00000261058 C1QTNF12Q5T7M4 302 aa4.33□□□□□ -1.72
CCDC54-201ENST00000261058 C9orf57Q5W0N0 161 aa4.33□□□□□ -1.72
CCDC54-201ENST00000261058 GAGE2AQ6NT46 116 aa4.33□□□□□ -1.72
CCDC54-201ENST00000261058 ARMC9Q7Z3E5 817 aa4.33□□□□□ -1.72
CCDC54-201ENST00000261058 GPR180Q86V85 440 aa4.33□□□□□ -1.72
CCDC54-201ENST00000261058 ZSCAN30Q86W11 494 aa4.33□□□□□ -1.72
CCDC54-201ENST00000261058 DNAAF5Q86Y56 855 aa4.33□□□□□ -1.72
CCDC54-201ENST00000261058 RNF113BQ8IZP6 322 aaKnown RBP4.33□□□□□ -1.72
CCDC54-201ENST00000261058 TTC30BQ8N4P2 665 aa4.33□□□□□ -1.72
CCDC54-201ENST00000261058 EMC1Q8N766 993 aa4.33□□□□□ -1.72
CCDC54-201ENST00000261058 NKAIN3Q8N8D7 197 aa4.33□□□□□ -1.72
CCDC54-201ENST00000261058 LNX1Q8TBB1 728 aaPredicted RBP4.33□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms