RNA–Protein interactions for RNA: ENST00000637053.1

VIM-210, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 508 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-210ENST00000637053 LYSMD3Q7Z3D4 306 aa4.88□□□□□ -1.63
VIM-210ENST00000637053 PRICKLE2Q7Z3G6 844 aa4.88□□□□□ -1.63
VIM-210ENST00000637053 GTPBP3Q969Y2 492 aaKnown RBP4.88□□□□□ -1.63
VIM-210ENST00000637053 OCSTAMPQ9BR26 566 aa4.88□□□□□ -1.63
VIM-210ENST00000637053 LIMD1Q9UGP4 676 aa4.88□□□□□ -1.63
VIM-210ENST00000637053 SHISA8B8ZZ34 492 aa4.87□□□□□ -1.63
VIM-210ENST00000637053 ADH1AP07327 375 aa4.87□□□□□ -1.63
VIM-210ENST00000637053 PTGIRP43119 386 aa4.87□□□□□ -1.63
VIM-210ENST00000637053 C1orf229Q6ZS94 237 aaPredicted RBP4.87□□□□□ -1.63
VIM-210ENST00000637053 ZNF784Q8NCA9 323 aaPredicted RBP4.87□□□□□ -1.63
VIM-210ENST00000637053 LRRC4BQ9NT99 713 aa4.87□□□□□ -1.63
VIM-210ENST00000637053 SUPT5HO00267 1087 aaKnown RBP4.86□□□□□ -1.63
VIM-210ENST00000637053 LILRB3O75022 631 aa4.86□□□□□ -1.63
VIM-210ENST00000637053 HOXB4P17483 251 aaPredicted RBP4.86□□□□□ -1.63
VIM-210ENST00000637053 DIXDC1Q155Q3 683 aa4.86□□□□□ -1.63
VIM-210ENST00000637053 RTL5Q5HYW3 569 aaPredicted RBP4.86□□□□□ -1.63
VIM-210ENST00000637053 GPKOWQ92917 476 aaPredicted RBP eCLIP4.86□□□□□ -1.63
VIM-210ENST00000637053 SLC10A4Q96EP9 437 aa4.86□□□□□ -1.63
VIM-210ENST00000637053 C1QTNF9BB2RNN3 333 aa4.85□□□□□ -1.63
VIM-210ENST00000637053 PDXDC2PQ6P474 469 aa4.85□□□□□ -1.63
VIM-210ENST00000637053 RIPOR1Q6ZS17 1223 aa4.85□□□□□ -1.63
VIM-210ENST00000637053 GMCL1Q96IK5 515 aa4.85□□□□□ -1.63
VIM-210ENST00000637053 ARHGAP9Q9BRR9 750 aa4.85□□□□□ -1.63
VIM-210ENST00000637053 SUV39H2Q9H5I1 410 aa4.85□□□□□ -1.63
VIM-210ENST00000637053 CDV3Q9UKY7 258 aaKnown RBP4.85□□□□□ -1.63
VIM-210ENST00000637053 NUTM2BA6NNL0 878 aaPredicted RBP4.84□□□□□ -1.63
VIM-210ENST00000637053 NUTM2EB1AL46 878 aaPredicted RBP4.84□□□□□ -1.63
VIM-210ENST00000637053 MX2P20592 715 aa4.84□□□□□ -1.63
VIM-210ENST00000637053 RNF144AP50876 292 aaPredicted RBP4.84□□□□□ -1.63
VIM-210ENST00000637053 NUTM2DQ5VT03 806 aaPredicted RBP4.84□□□□□ -1.63
VIM-210ENST00000637053 CD163Q86VB7 1156 aa4.84□□□□□ -1.63
VIM-210ENST00000637053 NUTM2AQ8IVF1 878 aaPredicted RBP4.84□□□□□ -1.63
VIM-210ENST00000637053 PARP9Q8IXQ6 854 aa4.84□□□□□ -1.63
VIM-210ENST00000637053 ERVH48-1M5A8F1 160 aa4.83□□□□□ -1.64
VIM-210ENST00000637053 RAB15P59190 212 aa4.83□□□□□ -1.64
VIM-210ENST00000637053 FOXR1Q6PIV2 292 aa4.83□□□□□ -1.64
VIM-210ENST00000637053 LINC00114Q6XXX2 140 aa4.83□□□□□ -1.64
VIM-210ENST00000637053 OXCT2Q9BYC2 517 aaPredicted RBP4.83□□□□□ -1.64
VIM-210ENST00000637053 MKL2Q9ULH7 1088 aa4.83□□□□□ -1.64
VIM-210ENST00000637053 THBS1P07996 1170 aa4.82□□□□□ -1.64
VIM-210ENST00000637053 UBTFP17480 764 aaKnown RBP4.82□□□□□ -1.64
VIM-210ENST00000637053 CHRNA4P43681 627 aa4.82□□□□□ -1.64
VIM-210ENST00000637053 CTDSPL2Q05D32 466 aa4.82□□□□□ -1.64
VIM-210ENST00000637053 GRIN2CQ14957 1233 aa4.82□□□□□ -1.64
VIM-210ENST00000637053 FOXD4L6Q3SYB3 417 aaPredicted RBP4.82□□□□□ -1.64
VIM-210ENST00000637053 MYSM1Q5VVJ2 828 aa4.82□□□□□ -1.64
VIM-210ENST00000637053 FOXD4L3Q6VB84 417 aaPredicted RBP4.82□□□□□ -1.64
VIM-210ENST00000637053 BARGINQ6ZT62 677 aa4.82□□□□□ -1.64
VIM-210ENST00000637053 ZBTB33Q86T24 672 aa4.82□□□□□ -1.64
VIM-210ENST00000637053 ALYREFQ86V81 257 aaKnown RBP4.82□□□□□ -1.64
VIM-210ENST00000637053 FKBPLQ9UIM3 349 aa4.82□□□□□ -1.64
VIM-210ENST00000637053 DYRK1BQ9Y463 629 aa4.82□□□□□ -1.64
VIM-210ENST00000637053 KRTAP4-8A0A0G2JLE6 195 aa4.81□□□□□ -1.64
VIM-210ENST00000637053 POU4F2Q12837 409 aa4.81□□□□□ -1.64
VIM-210ENST00000637053 TUSC1Q2TAM9 212 aa4.81□□□□□ -1.64
VIM-210ENST00000637053 ZMYM1Q5SVZ6 1142 aa4.81□□□□□ -1.64
VIM-210ENST00000637053 KRTAP19-1Q8IUB9 90 aa4.81□□□□□ -1.64
VIM-210ENST00000637053 HELBQ8NG08 1087 aaPredicted RBP4.81□□□□□ -1.64
VIM-210ENST00000637053 ADAM32Q8TC27 787 aa4.81□□□□□ -1.64
VIM-210ENST00000637053 GAS2L1Q99501 681 aaPredicted RBP4.81□□□□□ -1.64
VIM-210ENST00000637053 SEMA6BQ9H3T3 888 aa4.81□□□□□ -1.64
VIM-210ENST00000637053 LOC105371045A0A1W2PR82 267 aa4.8□□□□□ -1.64
VIM-210ENST00000637053 DOC2BQ14184 412 aa4.8□□□□□ -1.64
VIM-210ENST00000637053 DHX30Q7L2E3 1194 aaKnown RBP eCLIP4.8□□□□□ -1.64
VIM-210ENST00000637053 LRRN4Q8WUT4 740 aa4.8□□□□□ -1.64
VIM-210ENST00000637053 KLRG1Q96E93 195 aa4.8□□□□□ -1.64
VIM-210ENST00000637053 TRERF1Q96PN7 1200 aa4.8□□□□□ -1.64
VIM-210ENST00000637053 RRAGCQ9HB90 399 aa4.8□□□□□ -1.64
VIM-210ENST00000637053 CYLDQ9NQC7 956 aa4.8□□□□□ -1.64
VIM-210ENST00000637053 H7C1W4 665 aa4.79□□□□□ -1.64
VIM-210ENST00000637053 EDARADDQ8WWZ3 215 aa4.79□□□□□ -1.64
VIM-210ENST00000637053 NSFL1CQ9UNZ2 370 aaKnown RBP4.79□□□□□ -1.64
VIM-210ENST00000637053 ESPNB1AK53 854 aa4.78□□□□□ -1.64
VIM-210ENST00000637053 ZMYND10O75800 440 aa4.78□□□□□ -1.64
VIM-210ENST00000637053 MAP2K3P46734 347 aa4.78□□□□□ -1.64
VIM-210ENST00000637053 NR6A1Q15406 480 aa4.78□□□□□ -1.64
VIM-210ENST00000637053 A0A1W2PRU2 124 aa4.77□□□□□ -1.65
VIM-210ENST00000637053 MEN1O00255 615 aa4.77□□□□□ -1.65
VIM-210ENST00000637053 C2CD2LO14523 706 aa4.77□□□□□ -1.65
VIM-210ENST00000637053 GPC1P35052 558 aa4.77□□□□□ -1.65
VIM-210ENST00000637053 PTK2Q05397 1052 aa4.77□□□□□ -1.65
VIM-210ENST00000637053 UBAP2LQ14157 1087 aaKnown RBP4.77□□□□□ -1.65
VIM-210ENST00000637053 NBPF20Q3BBV1 942 aa4.77□□□□□ -1.65
VIM-210ENST00000637053 FBXO31Q5XUX0 539 aaPredicted RBP4.77□□□□□ -1.65
VIM-210ENST00000637053 NBPF10Q6P3W6 841 aaKnown RBP4.77□□□□□ -1.65
VIM-210ENST00000637053 NBPF15Q8N660 670 aa4.77□□□□□ -1.65
VIM-210ENST00000637053 GRIP2Q9C0E4 1043 aa4.77□□□□□ -1.65
VIM-210ENST00000637053 NUCKS1Q9H1E3 243 aaKnown RBP4.77□□□□□ -1.65
VIM-210ENST00000637053 CFHR5Q9BXR6 569 aa4.76□□□□□ -1.65
VIM-210ENST00000637053 ZC3H4Q9UPT8 1303 aaKnown RBP4.75□□□□□ -1.65
VIM-210ENST00000637053 ATP5J2-PTCD1G3V325 749 aa4.75□□□□□ -1.65
VIM-210ENST00000637053 GNB5O14775 395 aa4.75□□□□□ -1.65
VIM-210ENST00000637053 TRIM66O15016 1216 aa4.75□□□□□ -1.65
VIM-210ENST00000637053 F11P03951 625 aa4.75□□□□□ -1.65
VIM-210ENST00000637053 EPS8L1Q8TE68 723 aa4.75□□□□□ -1.65
VIM-210ENST00000637053 GDF2Q9UK05 429 aaPredicted RBP4.75□□□□□ -1.65
VIM-210ENST00000637053 GPSM3Q9Y4H4 160 aa4.75□□□□□ -1.65
VIM-210ENST00000637053 BTBD11A6QL63 1104 aa4.74□□□□□ -1.65
VIM-210ENST00000637053 SPATA31C2B4DYI2 1134 aa4.74□□□□□ -1.65
VIM-210ENST00000637053 DGKGP49619 791 aa4.74□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms