RNA–Protein interactions for RNA: ENST00000622555.1

PTCHD3-202, Transcript of patched domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene PTCHD3, Length 1,720 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3-202ENST00000622555 TRIM35Q9UPQ4 493 aa23.37■■□□□ 1.33
PTCHD3-202ENST00000622555 AMOTQ4VCS5 1084 aa23.36■■□□□ 1.33
PTCHD3-202ENST00000622555 FNBP4Q8N3X1 1017 aaPredicted RBP23.36■■□□□ 1.33
PTCHD3-202ENST00000622555 LMOD3Q0VAK6 560 aa23.36■■□□□ 1.33
PTCHD3-202ENST00000622555 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.35■■□□□ 1.33
PTCHD3-202ENST00000622555 BCL9LQ86UU0 1499 aa23.35■■□□□ 1.33
PTCHD3-202ENST00000622555 PDE3BQ13370 1112 aa23.35■■□□□ 1.33
PTCHD3-202ENST00000622555 PKD1L3Q7Z443 1732 aa23.34■■□□□ 1.33
PTCHD3-202ENST00000622555 WNK3Q9BYP7 1800 aa23.34■■□□□ 1.33
PTCHD3-202ENST00000622555 PLEKHG2Q9H7P9 1386 aa23.34■■□□□ 1.33
PTCHD3-202ENST00000622555 IL2RBP14784 551 aa23.33■■□□□ 1.33
PTCHD3-202ENST00000622555 GOLGA2Q08379 1002 aa23.33■■□□□ 1.33
PTCHD3-202ENST00000622555 USP21Q9UK80 565 aa23.33■■□□□ 1.33
PTCHD3-202ENST00000622555 CCDC9Q9Y3X0 531 aaKnown RBP23.33■■□□□ 1.33
PTCHD3-202ENST00000622555 GTF3C3Q9Y5Q9 886 aa23.33■■□□□ 1.33
PTCHD3-202ENST00000622555 OVOS2A0A0G2JMS6 1433 aa23.33■■□□□ 1.33
PTCHD3-202ENST00000622555 ZNF530Q6P9A1 599 aaPredicted RBP23.33■■□□□ 1.32
PTCHD3-202ENST00000622555 SPATA31A1Q5TZJ5 1347 aa23.32■■□□□ 1.32
PTCHD3-202ENST00000622555 WDR63Q8IWG1 891 aa23.32■■□□□ 1.32
PTCHD3-202ENST00000622555 CDCA7LQ96GN5 454 aa23.32■■□□□ 1.32
PTCHD3-202ENST00000622555 SPG7Q9UQ90 795 aa23.32■■□□□ 1.32
PTCHD3-202ENST00000622555 MAP3K5Q99683 1374 aa23.32■■□□□ 1.32
PTCHD3-202ENST00000622555 AFF2P51816 1311 aa23.31■■□□□ 1.32
PTCHD3-202ENST00000622555 SPATA31A5Q5VU36 1347 aa23.31■■□□□ 1.32
PTCHD3-202ENST00000622555 SPATA31A7Q8IWB4 1347 aa23.31■■□□□ 1.32
PTCHD3-202ENST00000622555 GNAT3A8MTJ3 354 aa23.3■■□□□ 1.32
PTCHD3-202ENST00000622555 RTF1Q92541 710 aaKnown RBP23.3■■□□□ 1.32
PTCHD3-202ENST00000622555 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP23.3■■□□□ 1.32
PTCHD3-202ENST00000622555 VPS72Q15906 364 aa23.3■■□□□ 1.32
PTCHD3-202ENST00000622555 DCTN1Q14203 1278 aa23.29■■□□□ 1.32
PTCHD3-202ENST00000622555 C1orf141Q5JVX7 400 aa23.29■■□□□ 1.32
PTCHD3-202ENST00000622555 THUMPD2Q9BTF0 503 aaKnown RBP23.29■■□□□ 1.32
PTCHD3-202ENST00000622555 VIRMAQ69YN4 1812 aaKnown RBP23.29■■□□□ 1.32
PTCHD3-202ENST00000622555 THRAP3Q9Y2W1 955 aaKnown RBP23.28■■□□□ 1.32
PTCHD3-202ENST00000622555 DISP2A7MBM2 1401 aa23.28■■□□□ 1.32
PTCHD3-202ENST00000622555 HTATSF1O43719 755 aaKnown RBP23.28■■□□□ 1.32
PTCHD3-202ENST00000622555 AKAP4Q5JQC9 854 aa23.28■■□□□ 1.32
PTCHD3-202ENST00000622555 MCM10Q7L590 875 aa23.28■■□□□ 1.32
PTCHD3-202ENST00000622555 CALD1Q05682 793 aaKnown RBP23.27■■□□□ 1.32
PTCHD3-202ENST00000622555 ZCRB1Q8TBF4 217 aaKnown RBP23.27■■□□□ 1.32
PTCHD3-202ENST00000622555 SHANK3Q9BYB0 1731 aa23.26■■□□□ 1.31
PTCHD3-202ENST00000622555 E9PSI1 815 aa23.26■■□□□ 1.31
PTCHD3-202ENST00000622555 SLFN5Q08AF3 891 aa23.26■■□□□ 1.31
PTCHD3-202ENST00000622555 SPINK5Q9NQ38 1064 aaPredicted RBP23.26■■□□□ 1.31
PTCHD3-202ENST00000622555 IL16Q14005 1332 aa23.24■■□□□ 1.31
PTCHD3-202ENST00000622555 CDCA7Q9BWT1 371 aaPredicted RBP23.24■■□□□ 1.31
PTCHD3-202ENST00000622555 PCDH11XQ9BZA7 1347 aa23.24■■□□□ 1.31
PTCHD3-202ENST00000622555 PCDH11YQ9BZA8 1340 aa23.24■■□□□ 1.31
PTCHD3-202ENST00000622555 LRRC37A3O60309 1634 aa23.23■■□□□ 1.31
PTCHD3-202ENST00000622555 PHKG2P15735 406 aa23.23■■□□□ 1.31
PTCHD3-202ENST00000622555 BARGINQ6ZT62 677 aa23.23■■□□□ 1.31
PTCHD3-202ENST00000622555 IFNL2Q8IZJ0 200 aa23.23■■□□□ 1.31
PTCHD3-202ENST00000622555 CYP27B1O15528 508 aa23.22■■□□□ 1.31
PTCHD3-202ENST00000622555 MPRIPQ6WCQ1 1025 aa23.22■■□□□ 1.31
PTCHD3-202ENST00000622555 IL17REQ8NFR9 667 aa23.22■■□□□ 1.31
PTCHD3-202ENST00000622555 LAS1LQ9Y4W2 734 aaKnown RBP23.22■■□□□ 1.31
PTCHD3-202ENST00000622555 ATRNO75882 1429 aa23.21■■□□□ 1.31
PTCHD3-202ENST00000622555 DUSP27Q5VZP5 1158 aa23.21■■□□□ 1.31
PTCHD3-202ENST00000622555 MYH16Q9H6N6 1097 aa23.21■■□□□ 1.31
PTCHD3-202ENST00000622555 TRPC5Q9UL62 973 aaPredicted RBP23.21■■□□□ 1.31
PTCHD3-202ENST00000622555 SCN11AQ9UI33 1791 aa23.21■■□□□ 1.31
PTCHD3-202ENST00000622555 TRMT2AQ8IZ69 625 aaKnown RBP23.2■■□□□ 1.3
PTCHD3-202ENST00000622555 FAM98CQ17RN3 349 aaKnown RBP23.19■■□□□ 1.3
PTCHD3-202ENST00000622555 DDX54Q8TDD1 881 aaKnown RBP23.19■■□□□ 1.3
PTCHD3-202ENST00000622555 LGR6Q9HBX8 967 aa23.19■■□□□ 1.3
PTCHD3-202ENST00000622555 IFT57Q9NWB7 429 aa23.19■■□□□ 1.3
PTCHD3-202ENST00000622555 ADAMTS7Q9UKP4 1686 aa23.19■■□□□ 1.3
PTCHD3-202ENST00000622555 EXOC5O00471 708 aa23.19■■□□□ 1.3
PTCHD3-202ENST00000622555 RNMTO43148 476 aaKnown RBP23.19■■□□□ 1.3
PTCHD3-202ENST00000622555 GNAI1P63096 354 aa23.19■■□□□ 1.3
PTCHD3-202ENST00000622555 CEMIPQ8WUJ3 1361 aa23.19■■□□□ 1.3
PTCHD3-202ENST00000622555 TNS2Q63HR2 1409 aa23.19■■□□□ 1.3
PTCHD3-202ENST00000622555 GLI3P10071 1580 aa23.19■■□□□ 1.3
PTCHD3-202ENST00000622555 HSP90AB1P08238 724 aaKnown RBP23.18■■□□□ 1.3
PTCHD3-202ENST00000622555 GJD4Q96KN9 370 aaPredicted RBP23.18■■□□□ 1.3
PTCHD3-202ENST00000622555 TSR2Q969E8 191 aaKnown RBP23.17■■□□□ 1.3
PTCHD3-202ENST00000622555 CFAP44Q96MT7 982 aa23.17■■□□□ 1.3
PTCHD3-202ENST00000622555 KDM6AO15550 1401 aaPredicted RBP23.17■■□□□ 1.3
PTCHD3-202ENST00000622555 FANCIQ9NVI1 1328 aa23.17■■□□□ 1.3
PTCHD3-202ENST00000622555 DDB1Q16531 1140 aa23.16■■□□□ 1.3
PTCHD3-202ENST00000622555 QTRT2Q9H974 415 aaKnown RBP23.16■■□□□ 1.3
PTCHD3-202ENST00000622555 ZNF853P0CG23 659 aa23.16■■□□□ 1.3
PTCHD3-202ENST00000622555 DCAF5Q96JK2 942 aa23.16■■□□□ 1.3
PTCHD3-202ENST00000622555 TEFQ10587 303 aa23.14■■□□□ 1.3
PTCHD3-202ENST00000622555 SIPA1L3O60292 1781 aaPredicted RBP23.14■■□□□ 1.29
PTCHD3-202ENST00000622555 THSD7AQ9UPZ6 1657 aa23.14■■□□□ 1.29
PTCHD3-202ENST00000622555 A0A0G2JS52 829 aa23.13■■□□□ 1.29
PTCHD3-202ENST00000622555 MYT1Q01538 1121 aa23.13■■□□□ 1.29
PTCHD3-202ENST00000622555 ZNF772Q68DY9 489 aaPredicted RBP23.13■■□□□ 1.29
PTCHD3-202ENST00000622555 MBIPQ9NS73 344 aa23.13■■□□□ 1.29
PTCHD3-202ENST00000622555 TAF7Q15545 349 aaPredicted RBP23.13■■□□□ 1.29
PTCHD3-202ENST00000622555 CHL1O00533 1208 aa23.12■■□□□ 1.29
PTCHD3-202ENST00000622555 NKX1-1Q15270 411 aaPredicted RBP23.12■■□□□ 1.29
PTCHD3-202ENST00000622555 MIS18AQ9NYP9 233 aa23.11■■□□□ 1.29
PTCHD3-202ENST00000622555 TSPYL4Q9UJ04 414 aa23.11■■□□□ 1.29
PTCHD3-202ENST00000622555 KAT6BQ8WYB5 2073 aa23.1■■□□□ 1.29
PTCHD3-202ENST00000622555 SLC52A2Q9HAB3 445 aa23.09■■□□□ 1.29
PTCHD3-202ENST00000622555 MRC1P22897 1456 aa23.09■■□□□ 1.29
PTCHD3-202ENST00000622555 TOGARAM1Q9Y4F4 1720 aa23.09■■□□□ 1.29
PTCHD3-202ENST00000622555 EXOSC9Q06265 439 aaKnown RBP23.08■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms