RNA–Protein interactions for RNA: ENST00000621325.1

LIME1-210, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 2,410 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-210ENST00000621325 NWD1Q149M9 1564 aa27.02■■□□□ 1.92
LIME1-210ENST00000621325 PROSER2Q86WR7 435 aaPredicted RBP27.01■■□□□ 1.92
LIME1-210ENST00000621325 HDAC1Q13547 482 aaPredicted RBP27■■□□□ 1.91
LIME1-210ENST00000621325 USHBP1Q8N6Y0 703 aa26.99■■□□□ 1.91
LIME1-210ENST00000621325 RTF1Q92541 710 aaKnown RBP26.99■■□□□ 1.91
LIME1-210ENST00000621325 ZBTB47Q9UFB7 747 aaPredicted RBP26.99■■□□□ 1.91
LIME1-210ENST00000621325 PLEKHG5O94827 1062 aa26.99■■□□□ 1.91
LIME1-210ENST00000621325 GAS2L2Q8NHY3 880 aa26.98■■□□□ 1.91
LIME1-210ENST00000621325 ABCC4O15439 1325 aa26.98■■□□□ 1.91
LIME1-210ENST00000621325 NFAT5O94916 1531 aa26.97■■□□□ 1.91
LIME1-210ENST00000621325 ZBTB7CA1YPR0 619 aa26.97■■□□□ 1.91
LIME1-210ENST00000621325 ZBTB7BO15156 539 aaPredicted RBP26.97■■□□□ 1.91
LIME1-210ENST00000621325 IL27Q8NEV9 243 aa26.97■■□□□ 1.91
LIME1-210ENST00000621325 LTN1O94822 1766 aa26.96■■□□□ 1.91
LIME1-210ENST00000621325 IP6K1Q92551 441 aa26.96■■□□□ 1.91
LIME1-210ENST00000621325 RTN4Q9NQC3 1192 aaKnown RBP26.95■■□□□ 1.9
LIME1-210ENST00000621325 RTL1A6NKG5 1358 aa26.95■■□□□ 1.9
LIME1-210ENST00000621325 KIAA0232Q92628 1395 aa26.95■■□□□ 1.9
LIME1-210ENST00000621325 C1orf115Q9H7X2 142 aa26.94■■□□□ 1.9
LIME1-210ENST00000621325 TSPYL4Q9UJ04 414 aa26.94■■□□□ 1.9
LIME1-210ENST00000621325 LMOD2Q6P5Q4 547 aa26.92■■□□□ 1.9
LIME1-210ENST00000621325 API5Q9BZZ5 524 aaKnown RBP26.92■■□□□ 1.9
LIME1-210ENST00000621325 NBR1Q14596 966 aa26.91■■□□□ 1.9
LIME1-210ENST00000621325 SMC5Q8IY18 1101 aa26.91■■□□□ 1.9
LIME1-210ENST00000621325 GNAT3A8MTJ3 354 aa26.9■■□□□ 1.9
LIME1-210ENST00000621325 NBPF6Q5VWK0 638 aa26.9■■□□□ 1.9
LIME1-210ENST00000621325 KCNH5Q8NCM2 988 aa26.9■■□□□ 1.9
LIME1-210ENST00000621325 NBPF4Q96M43 638 aa26.9■■□□□ 1.9
LIME1-210ENST00000621325 SEC24BO95487 1268 aa26.89■■□□□ 1.9
LIME1-210ENST00000621325 C19orf44Q9H6X5 657 aa26.89■■□□□ 1.9
LIME1-210ENST00000621325 GCP02774 474 aa26.88■■□□□ 1.89
LIME1-210ENST00000621325 IL17REQ8NFR9 667 aa26.88■■□□□ 1.89
LIME1-210ENST00000621325 MSH6P52701 1360 aa26.88■■□□□ 1.89
LIME1-210ENST00000621325 C1orf167Q5SNV9 1468 aa26.88■■□□□ 1.89
LIME1-210ENST00000621325 HTATSF1O43719 755 aaKnown RBP26.87■■□□□ 1.89
LIME1-210ENST00000621325 HAP1P54257 671 aaPredicted RBP26.87■■□□□ 1.89
LIME1-210ENST00000621325 KRT28Q7Z3Y7 464 aa26.87■■□□□ 1.89
LIME1-210ENST00000621325 LRRC59Q96AG4 307 aaKnown RBP26.87■■□□□ 1.89
LIME1-210ENST00000621325 RGS12O14924 1447 aa26.87■■□□□ 1.89
LIME1-210ENST00000621325 MAP3K5Q99683 1374 aa26.86■■□□□ 1.89
LIME1-210ENST00000621325 VIRMAQ69YN4 1812 aaKnown RBP26.85■■□□□ 1.89
LIME1-210ENST00000621325 HSPA2P54652 639 aa26.85■■□□□ 1.89
LIME1-210ENST00000621325 SLC4A2P04920 1241 aa26.84■■□□□ 1.89
LIME1-210ENST00000621325 ARHGEF25Q86VW2 580 aa26.84■■□□□ 1.89
LIME1-210ENST00000621325 SIRT2Q8IXJ6 389 aa26.84■■□□□ 1.89
LIME1-210ENST00000621325 TMEM94Q12767 1356 aa26.84■■□□□ 1.89
LIME1-210ENST00000621325 USP19O94966 1318 aa26.83■■□□□ 1.89
LIME1-210ENST00000621325 LRRC37A3O60309 1634 aa26.83■■□□□ 1.89
LIME1-210ENST00000621325 CHMP4BQ9H444 224 aaKnown RBP26.83■■□□□ 1.89
LIME1-210ENST00000621325 INTS3Q68E01 1043 aaKnown RBP26.81■■□□□ 1.88
LIME1-210ENST00000621325 TRPM3Q9HCF6 1732 aaPredicted RBP26.81■■□□□ 1.88
LIME1-210ENST00000621325 SLIT3O75094 1523 aa26.81■■□□□ 1.88
LIME1-210ENST00000621325 NUCB1Q02818 461 aa26.81■■□□□ 1.88
LIME1-210ENST00000621325 G2E3Q7L622 706 aa26.81■■□□□ 1.88
LIME1-210ENST00000621325 DDX17Q92841 729 aaKnown RBP26.81■■□□□ 1.88
LIME1-210ENST00000621325 STRCP1A6NGW2 1772 aa26.81■■□□□ 1.88
LIME1-210ENST00000621325 DDRGK1Q96HY6 314 aa26.8■■□□□ 1.88
LIME1-210ENST00000621325 RGPD2P0DJD1 1756 aa26.8■■□□□ 1.88
LIME1-210ENST00000621325 LNPKQ9C0E8 428 aa26.8■■□□□ 1.88
LIME1-210ENST00000621325 ATF3P18847 181 aa26.79■■□□□ 1.88
LIME1-210ENST00000621325 PTPRCP08575 1304 aa26.78■■□□□ 1.88
LIME1-210ENST00000621325 PHRF1Q9P1Y6 1649 aaKnown RBP26.78■■□□□ 1.88
LIME1-210ENST00000621325 EIF5BO60841 1220 aaKnown RBP26.78■■□□□ 1.88
LIME1-210ENST00000621325 SLC4A3P48751 1232 aa26.78■■□□□ 1.88
LIME1-210ENST00000621325 AXIN2Q9Y2T1 843 aa26.78■■□□□ 1.88
LIME1-210ENST00000621325 MST1RQ04912 1400 aa26.77■■□□□ 1.88
LIME1-210ENST00000621325 TAF7Q15545 349 aaPredicted RBP26.77■■□□□ 1.88
LIME1-210ENST00000621325 CHD1LQ86WJ1 897 aa26.76■■□□□ 1.87
LIME1-210ENST00000621325 NECTIN2Q92692 538 aa26.76■■□□□ 1.87
LIME1-210ENST00000621325 LGR6Q9HBX8 967 aa26.75■■□□□ 1.87
LIME1-210ENST00000621325 KIF1AQ12756 1690 aa26.75■■□□□ 1.87
LIME1-210ENST00000621325 ANKRD24Q8TF21 1146 aa26.75■■□□□ 1.87
LIME1-210ENST00000621325 F6X3S4 739 aa26.74■■□□□ 1.87
LIME1-210ENST00000621325 ANKRD45Q5TZF3 282 aa26.74■■□□□ 1.87
LIME1-210ENST00000621325 GCC1Q96CN9 775 aa26.73■■□□□ 1.87
LIME1-210ENST00000621325 ZC3H6P61129 1189 aaKnown RBP26.73■■□□□ 1.87
LIME1-210ENST00000621325 CEMIPQ8WUJ3 1361 aa26.72■■□□□ 1.87
LIME1-210ENST00000621325 MEIS3Q99687 375 aa26.71■■□□□ 1.87
LIME1-210ENST00000621325 SLC4A10Q6U841 1118 aa26.7■■□□□ 1.87
LIME1-210ENST00000621325 STK31Q9BXU1 1019 aa26.7■■□□□ 1.87
LIME1-210ENST00000621325 ZNF530Q6P9A1 599 aaPredicted RBP26.7■■□□□ 1.86
LIME1-210ENST00000621325 PKNOX2Q96KN3 472 aa26.69■■□□□ 1.86
LIME1-210ENST00000621325 BABAM1Q9NWV8 329 aa26.69■■□□□ 1.86
LIME1-210ENST00000621325 MED1Q15648 1581 aaPredicted RBP26.69■■□□□ 1.86
LIME1-210ENST00000621325 CCDC30Q5VVM6 783 aa26.68■■□□□ 1.86
LIME1-210ENST00000621325 ATP10DQ9P241 1426 aa26.68■■□□□ 1.86
LIME1-210ENST00000621325 ALS2Q96Q42 1657 aa26.68■■□□□ 1.86
LIME1-210ENST00000621325 MPRIPQ6WCQ1 1025 aa26.68■■□□□ 1.86
LIME1-210ENST00000621325 PLEKHO1Q53GL0 409 aaPredicted RBP26.67■■□□□ 1.86
LIME1-210ENST00000621325 PXDNQ92626 1479 aa26.66■■□□□ 1.86
LIME1-210ENST00000621325 DCCP43146 1447 aa26.66■■□□□ 1.86
LIME1-210ENST00000621325 NCAPD2Q15021 1401 aa26.66■■□□□ 1.86
LIME1-210ENST00000621325 FLIIQ13045 1269 aa26.66■■□□□ 1.86
LIME1-210ENST00000621325 AKAP4Q5JQC9 854 aa26.66■■□□□ 1.86
LIME1-210ENST00000621325 CEP85Q6P2H3 762 aa26.65■■□□□ 1.86
LIME1-210ENST00000621325 ANKRD44Q8N8A2 993 aa26.65■■□□□ 1.86
LIME1-210ENST00000621325 CABLES1Q8TDN4 633 aa26.65■■□□□ 1.86
LIME1-210ENST00000621325 KCNQ3O43525 872 aa26.65■■□□□ 1.86
LIME1-210ENST00000621325 CADPS2Q86UW7 1296 aa26.65■■□□□ 1.86
LIME1-210ENST00000621325 FAM208AQ9UK61 1670 aaKnown RBP26.64■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms