RNA–Protein interactions for RNA: ENST00000621217.4

GGA3-222, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 2

Gene GGA3, Length 4,181 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-222ENST00000621217 ST18O60284 1047 aa11.08□□□□□ -0.64
GGA3-222ENST00000621217 CABP4P57796 275 aa11.08□□□□□ -0.64
GGA3-222ENST00000621217 MCTP1Q6DN14 999 aa11.08□□□□□ -0.64
GGA3-222ENST00000621217 GCC1Q96CN9 775 aa11.08□□□□□ -0.64
GGA3-222ENST00000621217 GCP02774 474 aa11.07□□□□□ -0.64
GGA3-222ENST00000621217 IFT57Q9NWB7 429 aa11.07□□□□□ -0.64
GGA3-222ENST00000621217 NPC1L1Q9UHC9 1359 aa11.07□□□□□ -0.64
GGA3-222ENST00000621217 SETD1BQ9UPS6 1966 aaKnown RBP11.07□□□□□ -0.64
GGA3-222ENST00000621217 CEP152O94986 1710 aa11.07□□□□□ -0.64
GGA3-222ENST00000621217 KIF1BO60333 1816 aa11.07□□□□□ -0.64
GGA3-222ENST00000621217 VAMP4O75379 141 aa11.07□□□□□ -0.64
GGA3-222ENST00000621217 TRMT2AQ8IZ69 625 aaKnown RBP11.07□□□□□ -0.64
GGA3-222ENST00000621217 TBC1D32Q96NH3 1257 aa11.07□□□□□ -0.64
GGA3-222ENST00000621217 MAP7D2Q96T17 732 aa11.07□□□□□ -0.64
GGA3-222ENST00000621217 CCDC27Q2M243 656 aa11.07□□□□□ -0.64
GGA3-222ENST00000621217 RRP9O43818 475 aaKnown RBP11.06□□□□□ -0.64
GGA3-222ENST00000621217 FAM13BQ9NYF5 915 aa11.06□□□□□ -0.64
GGA3-222ENST00000621217 KDM5AP29375 1690 aaKnown RBP11.06□□□□□ -0.64
GGA3-222ENST00000621217 IL13P35225 146 aa11.06□□□□□ -0.64
GGA3-222ENST00000621217 TAF7Q15545 349 aaPredicted RBP11.06□□□□□ -0.64
GGA3-222ENST00000621217 INTS3Q68E01 1043 aaKnown RBP11.06□□□□□ -0.64
GGA3-222ENST00000621217 AEBP2Q6ZN18 517 aaPredicted RBP11.06□□□□□ -0.64
GGA3-222ENST00000621217 MEIS3Q99687 375 aa11.06□□□□□ -0.64
GGA3-222ENST00000621217 ABCC11Q96J66 1382 aa11.06□□□□□ -0.64
GGA3-222ENST00000621217 TET3O43151 1660 aa11.06□□□□□ -0.64
GGA3-222ENST00000621217 NEK4P51957 841 aa11.06□□□□□ -0.64
GGA3-222ENST00000621217 RIMBP3CA6NJZ7 1639 aa11.05□□□□□ -0.64
GGA3-222ENST00000621217 RIMBP3BA6NNM3 1639 aa11.05□□□□□ -0.64
GGA3-222ENST00000621217 RIMBP3Q9UFD9 1639 aa11.05□□□□□ -0.64
GGA3-222ENST00000621217 ALDH1L2Q3SY69 923 aa11.05□□□□□ -0.64
GGA3-222ENST00000621217 DDX11L8A8MPP1 907 aa11.05□□□□□ -0.64
GGA3-222ENST00000621217 DDX58O95786 925 aaKnown RBP11.05□□□□□ -0.64
GGA3-222ENST00000621217 UNC13BO14795 1591 aa11.05□□□□□ -0.64
GGA3-222ENST00000621217 INSRP06213 1382 aa11.05□□□□□ -0.64
GGA3-222ENST00000621217 RNF17Q9BXT8 1623 aaKnown RBP11.05□□□□□ -0.64
GGA3-222ENST00000621217 TBC1D9Q6ZT07 1266 aa11.05□□□□□ -0.64
GGA3-222ENST00000621217 C19orf44Q9H6X5 657 aa11.05□□□□□ -0.64
GGA3-222ENST00000621217 ZBTB40Q9NUA8 1239 aa11.05□□□□□ -0.64
GGA3-222ENST00000621217 MCM4P33991 863 aa11.04□□□□□ -0.64
GGA3-222ENST00000621217 CADPS2Q86UW7 1296 aa11.04□□□□□ -0.64
GGA3-222ENST00000621217 MRPL50Q8N5N7 158 aaKnown RBP11.04□□□□□ -0.64
GGA3-222ENST00000621217 NEUROD6Q96NK8 337 aa11.04□□□□□ -0.64
GGA3-222ENST00000621217 REC8O95072 547 aa11.04□□□□□ -0.64
GGA3-222ENST00000621217 SRGAP3O43295 1099 aa11.04□□□□□ -0.64
GGA3-222ENST00000621217 GNAI2P04899 355 aa11.04□□□□□ -0.64
GGA3-222ENST00000621217 HOXC9P31274 260 aa11.04□□□□□ -0.64
GGA3-222ENST00000621217 NUTM1Q86Y26 1132 aa11.04□□□□□ -0.64
GGA3-222ENST00000621217 CHMP4AQ9BY43 222 aa11.04□□□□□ -0.64
GGA3-222ENST00000621217 SRCIN1Q9C0H9 1055 aa11.04□□□□□ -0.64
GGA3-222ENST00000621217 IFIT2P09913 472 aaKnown RBP11.03□□□□□ -0.64
GGA3-222ENST00000621217 OTUD7AQ8TE49 926 aaPredicted RBP11.03□□□□□ -0.64
GGA3-222ENST00000621217 CFAP74Q9C0B2 1584 aa11.03□□□□□ -0.64
GGA3-222ENST00000621217 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.03□□□□□ -0.64
GGA3-222ENST00000621217 LARP6Q9BRS8 491 aaKnown RBP11.03□□□□□ -0.64
GGA3-222ENST00000621217 NRDCO43847 1150 aa11.03□□□□□ -0.64
GGA3-222ENST00000621217 PUS7Q96PZ0 661 aaKnown RBP11.03□□□□□ -0.64
GGA3-222ENST00000621217 KIDINS220Q9ULH0 1771 aa11.03□□□□□ -0.64
GGA3-222ENST00000621217 TPM2P07951 284 aa11.02□□□□□ -0.64
GGA3-222ENST00000621217 G3BP1Q13283 466 aaKnown RBP eCLIP11.02□□□□□ -0.64
GGA3-222ENST00000621217 LGR6Q9HBX8 967 aa11.02□□□□□ -0.64
GGA3-222ENST00000621217 SPG7Q9UQ90 795 aa11.02□□□□□ -0.64
GGA3-222ENST00000621217 SPHKAPQ2M3C7 1700 aa11.02□□□□□ -0.64
GGA3-222ENST00000621217 FLIIQ13045 1269 aa11.02□□□□□ -0.65
GGA3-222ENST00000621217 MEX3CQ5U5Q3 659 aaKnown RBP11.02□□□□□ -0.65
GGA3-222ENST00000621217 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.02□□□□□ -0.65
GGA3-222ENST00000621217 G2E3Q7L622 706 aa11.02□□□□□ -0.65
GGA3-222ENST00000621217 MTERF4Q7Z6M4 381 aaKnown RBP11.02□□□□□ -0.65
GGA3-222ENST00000621217 GNAI3P08754 354 aa11.02□□□□□ -0.65
GGA3-222ENST00000621217 NUCB1Q02818 461 aa11.02□□□□□ -0.65
GGA3-222ENST00000621217 UPF3BQ9BZI7 483 aaKnown RBP11.02□□□□□ -0.65
GGA3-222ENST00000621217 ARAP3Q8WWN8 1544 aa11.02□□□□□ -0.65
GGA3-222ENST00000621217 PI4KAP2A4QPH2 592 aa11.02□□□□□ -0.65
GGA3-222ENST00000621217 HDAC1Q13547 482 aaPredicted RBP11.02□□□□□ -0.65
GGA3-222ENST00000621217 PI4KAP1Q8N8J0 262 aa11.02□□□□□ -0.65
GGA3-222ENST00000621217 TTC21AQ8NDW8 1320 aa11.01□□□□□ -0.65
GGA3-222ENST00000621217 SYNMO15061 1565 aa11.01□□□□□ -0.65
GGA3-222ENST00000621217 NBPF6Q5VWK0 638 aa11.01□□□□□ -0.65
GGA3-222ENST00000621217 NBPF4Q96M43 638 aa11.01□□□□□ -0.65
GGA3-222ENST00000621217 PLEKHF1Q96S99 279 aa11.01□□□□□ -0.65
GGA3-222ENST00000621217 PPRC1Q5VV67 1664 aaKnown RBP11.01□□□□□ -0.65
GGA3-222ENST00000621217 GOLGA6L6A8MZA4 724 aa11.01□□□□□ -0.65
GGA3-222ENST00000621217 ZRSR1Q15695 479 aaKnown RBP11.01□□□□□ -0.65
GGA3-222ENST00000621217 MPNDQ8N594 471 aa11.01□□□□□ -0.65
GGA3-222ENST00000621217 LRRFIP2Q9Y608 721 aaKnown RBP11.01□□□□□ -0.65
GGA3-222ENST00000621217 MADDQ8WXG6 1647 aa11.01□□□□□ -0.65
GGA3-222ENST00000621217 ATP5J2-PTCD1G3V325 749 aa11.01□□□□□ -0.65
GGA3-222ENST00000621217 K7ELQ4 463 aaPredicted RBP11.01□□□□□ -0.65
GGA3-222ENST00000621217 CAVIN1Q6NZI2 390 aaKnown RBP11.01□□□□□ -0.65
GGA3-222ENST00000621217 RNF214Q8ND24 703 aa11.01□□□□□ -0.65
GGA3-222ENST00000621217 DIAPH3Q9NSV4 1193 aa11.01□□□□□ -0.65
GGA3-222ENST00000621217 MYOM2P54296 1465 aa11.01□□□□□ -0.65
GGA3-222ENST00000621217 SBNO2Q9Y2G9 1366 aa11□□□□□ -0.65
GGA3-222ENST00000621217 PRPF40AO75400 957 aaKnown RBP11□□□□□ -0.65
GGA3-222ENST00000621217 NFATC2IPQ8NCF5 419 aa11□□□□□ -0.65
GGA3-222ENST00000621217 CHPF2Q9P2E5 772 aa11□□□□□ -0.65
GGA3-222ENST00000621217 IL16Q14005 1332 aa11□□□□□ -0.65
GGA3-222ENST00000621217 FLT4P35916 1363 aa11□□□□□ -0.65
GGA3-222ENST00000621217 A2ML1A8K2U0 1454 aa11□□□□□ -0.65
GGA3-222ENST00000621217 ZBTB7BO15156 539 aaPredicted RBP11□□□□□ -0.65
GGA3-222ENST00000621217 DTNBO60941 627 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms