RNA–Protein interactions for RNA: ENST00000618902.1

SHMT1-211, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 5 BASIC

Gene SHMT1, Length 378 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-211ENST00000618902 IL2RBP14784 551 aa7.09□□□□□ -1.27
SHMT1-211ENST00000618902 IL13P35225 146 aa7.09□□□□□ -1.27
SHMT1-211ENST00000618902 EYA1Q99502 592 aa7.09□□□□□ -1.27
SHMT1-211ENST00000618902 BCL11BQ9C0K0 894 aaPredicted RBP7.09□□□□□ -1.27
SHMT1-211ENST00000618902 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP7.09□□□□□ -1.27
SHMT1-211ENST00000618902 MEGF6O75095 1541 aa7.08□□□□□ -1.28
SHMT1-211ENST00000618902 RGPD1P0DJD0 1748 aa7.08□□□□□ -1.28
SHMT1-211ENST00000618902 FAM182BQ5T319 152 aa7.08□□□□□ -1.28
SHMT1-211ENST00000618902 AEBP1Q8IUX7 1158 aa7.08□□□□□ -1.28
SHMT1-211ENST00000618902 PRKRIP1Q9H875 184 aaPredicted RBP7.08□□□□□ -1.28
SHMT1-211ENST00000618902 UTRNP46939 3433 aa7.08□□□□□ -1.28
SHMT1-211ENST00000618902 CCDC184Q52MB2 194 aa7.07□□□□□ -1.28
SHMT1-211ENST00000618902 TNS2Q63HR2 1409 aa7.07□□□□□ -1.28
SHMT1-211ENST00000618902 WNK3Q9BYP7 1800 aa7.06□□□□□ -1.28
SHMT1-211ENST00000618902 IGSF1Q8N6C5 1336 aa7.06□□□□□ -1.28
SHMT1-211ENST00000618902 RGPD3A6NKT7 1758 aaPredicted RBP7.06□□□□□ -1.28
SHMT1-211ENST00000618902 RGPD4Q7Z3J3 1758 aa7.06□□□□□ -1.28
SHMT1-211ENST00000618902 RALBP1Q15311 655 aa7.06□□□□□ -1.28
SHMT1-211ENST00000618902 NBPF14Q5TI25 921 aa7.06□□□□□ -1.28
SHMT1-211ENST00000618902 MARCH10Q8NA82 808 aaPredicted RBP7.06□□□□□ -1.28
SHMT1-211ENST00000618902 RAPGEF4Q8WZA2 1011 aa7.06□□□□□ -1.28
SHMT1-211ENST00000618902 GOLGB1Q14789 3259 aaKnown RBP7.05□□□□□ -1.28
SHMT1-211ENST00000618902 LRRC37A3O60309 1634 aa7.05□□□□□ -1.28
SHMT1-211ENST00000618902 DIAPH1O60610 1272 aaKnown RBP7.05□□□□□ -1.28
SHMT1-211ENST00000618902 PTF1AQ7RTS3 328 aa7.05□□□□□ -1.28
SHMT1-211ENST00000618902 CAMKK2Q96RR4 588 aa7.05□□□□□ -1.28
SHMT1-211ENST00000618902 GTF3C3Q9Y5Q9 886 aa7.05□□□□□ -1.28
SHMT1-211ENST00000618902 KDRP35968 1356 aa7.05□□□□□ -1.28
SHMT1-211ENST00000618902 SHANK3Q9BYB0 1731 aa7.04□□□□□ -1.28
SHMT1-211ENST00000618902 MYBBP1AQ9BQG0 1328 aaKnown RBP7.04□□□□□ -1.28
SHMT1-211ENST00000618902 APBA3O96018 575 aa7.04□□□□□ -1.28
SHMT1-211ENST00000618902 HMOX1P09601 288 aa7.04□□□□□ -1.28
SHMT1-211ENST00000618902 SLC27A3Q5K4L6 730 aa7.04□□□□□ -1.28
SHMT1-211ENST00000618902 SULT6B1Q6IMI4 303 aa7.04□□□□□ -1.28
SHMT1-211ENST00000618902 ZCRB1Q8TBF4 217 aaKnown RBP7.04□□□□□ -1.28
SHMT1-211ENST00000618902 PCDH11XQ9BZA7 1347 aa7.03□□□□□ -1.28
SHMT1-211ENST00000618902 PCDH11YQ9BZA8 1340 aa7.03□□□□□ -1.28
SHMT1-211ENST00000618902 ZBTB22O15209 634 aa7.03□□□□□ -1.28
SHMT1-211ENST00000618902 CYP27B1O15528 508 aa7.03□□□□□ -1.28
SHMT1-211ENST00000618902 TRIM37O94972 964 aa7.03□□□□□ -1.28
SHMT1-211ENST00000618902 HSP90AB1P08238 724 aaKnown RBP7.03□□□□□ -1.28
SHMT1-211ENST00000618902 TATP17735 454 aaPredicted RBP7.03□□□□□ -1.28
SHMT1-211ENST00000618902 AMOTQ4VCS5 1084 aa7.03□□□□□ -1.28
SHMT1-211ENST00000618902 MIER1Q8N108 512 aa7.03□□□□□ -1.28
SHMT1-211ENST00000618902 SPG7Q9UQ90 795 aa7.03□□□□□ -1.28
SHMT1-211ENST00000618902 U2SURPO15042 1029 aaKnown RBP7.02□□□□□ -1.29
SHMT1-211ENST00000618902 NKX1-1Q15270 411 aaPredicted RBP7.02□□□□□ -1.29
SHMT1-211ENST00000618902 RSPH6AQ9H0K4 717 aa7.02□□□□□ -1.29
SHMT1-211ENST00000618902 PKD1L3Q7Z443 1732 aa7.01□□□□□ -1.29
SHMT1-211ENST00000618902 KCNQ2O43526 872 aa7.01□□□□□ -1.29
SHMT1-211ENST00000618902 DDX54Q8TDD1 881 aaKnown RBP7.01□□□□□ -1.29
SHMT1-211ENST00000618902 CNKSR2Q8WXI2 1034 aa7.01□□□□□ -1.29
SHMT1-211ENST00000618902 PHACTR3Q96KR7 559 aa7.01□□□□□ -1.29
SHMT1-211ENST00000618902 CFAP53Q96M91 514 aa7.01□□□□□ -1.29
SHMT1-211ENST00000618902 SBF2Q86WG5 1849 aa7□□□□□ -1.29
SHMT1-211ENST00000618902 U2AF1L5P0DN76 240 aaPredicted RBP7□□□□□ -1.29
SHMT1-211ENST00000618902 PHKG2P15735 406 aa7□□□□□ -1.29
SHMT1-211ENST00000618902 PRKAR2BP31323 418 aa7□□□□□ -1.29
SHMT1-211ENST00000618902 U2AF1Q01081 240 aaKnown RBP eCLIP7□□□□□ -1.29
SHMT1-211ENST00000618902 EN1Q05925 392 aaPredicted RBP7□□□□□ -1.29
SHMT1-211ENST00000618902 MTHFSDQ2M296 383 aaKnown RBP7□□□□□ -1.29
SHMT1-211ENST00000618902 DEFB132Q7Z7B7 95 aa7□□□□□ -1.29
SHMT1-211ENST00000618902 SMARCC1Q92922 1105 aaPredicted RBP7□□□□□ -1.29
SHMT1-211ENST00000618902 TNS1Q9HBL0 1735 aaKnown RBP7□□□□□ -1.29
SHMT1-211ENST00000618902 ERVV-2B6SEH9 535 aa6.99□□□□□ -1.29
SHMT1-211ENST00000618902 ANP32CO43423 234 aa6.99□□□□□ -1.29
SHMT1-211ENST00000618902 ZNF530Q6P9A1 599 aaPredicted RBP6.99□□□□□ -1.29
SHMT1-211ENST00000618902 IFNL2Q8IZJ0 200 aa6.99□□□□□ -1.29
SHMT1-211ENST00000618902 FLAD1Q8NFF5 587 aa6.99□□□□□ -1.29
SHMT1-211ENST00000618902 SLC16A10Q8TF71 515 aa6.99□□□□□ -1.29
SHMT1-211ENST00000618902 ACSBG1Q96GR2 724 aa6.99□□□□□ -1.29
SHMT1-211ENST00000618902 PLEKHF1Q96S99 279 aa6.99□□□□□ -1.29
SHMT1-211ENST00000618902 KDM6AO15550 1401 aaPredicted RBP6.99□□□□□ -1.29
SHMT1-211ENST00000618902 TOGARAM1Q9Y4F4 1720 aa6.98□□□□□ -1.29
SHMT1-211ENST00000618902 NHSQ6T4R5 1651 aa6.98□□□□□ -1.29
SHMT1-211ENST00000618902 FCHSD2O94868 740 aa6.98□□□□□ -1.29
SHMT1-211ENST00000618902 EZH2Q15910 746 aaKnown RBP6.98□□□□□ -1.29
SHMT1-211ENST00000618902 PLEKHO1Q53GL0 409 aaPredicted RBP6.98□□□□□ -1.29
SHMT1-211ENST00000618902 PNISRQ8TF01 805 aaKnown RBP6.98□□□□□ -1.29
SHMT1-211ENST00000618902 DCAF5Q96JK2 942 aa6.98□□□□□ -1.29
SHMT1-211ENST00000618902 ADAMTS8Q9UP79 889 aa6.98□□□□□ -1.29
SHMT1-211ENST00000618902 RREB1Q92766 1687 aa6.97□□□□□ -1.29
SHMT1-211ENST00000618902 PRIM1P49642 420 aaKnown RBP6.97□□□□□ -1.29
SHMT1-211ENST00000618902 TXNRD1Q16881 649 aa6.97□□□□□ -1.29
SHMT1-211ENST00000618902 MPRIPQ6WCQ1 1025 aa6.97□□□□□ -1.29
SHMT1-211ENST00000618902 CCDC146Q8IYE0 955 aa6.97□□□□□ -1.29
SHMT1-211ENST00000618902 PNNQ9H307 717 aaKnown RBP6.97□□□□□ -1.29
SHMT1-211ENST00000618902 LGR6Q9HBX8 967 aa6.97□□□□□ -1.29
SHMT1-211ENST00000618902 STK32BQ9NY57 414 aa6.97□□□□□ -1.29
SHMT1-211ENST00000618902 NUDCQ9Y266 331 aa6.97□□□□□ -1.29
SHMT1-211ENST00000618902 LRP5O75197 1615 aa6.97□□□□□ -1.29
SHMT1-211ENST00000618902 CCER2I3L3R5 266 aa6.96□□□□□ -1.3
SHMT1-211ENST00000618902 SLC15A2Q16348 729 aa6.96□□□□□ -1.3
SHMT1-211ENST00000618902 PROM2Q8N271 834 aa6.96□□□□□ -1.3
SHMT1-211ENST00000618902 IL17REQ8NFR9 667 aa6.96□□□□□ -1.3
SHMT1-211ENST00000618902 SPON1Q9HCB6 807 aa6.96□□□□□ -1.3
SHMT1-211ENST00000618902 MRS2Q9HD23 443 aa6.96□□□□□ -1.3
SHMT1-211ENST00000618902 DOT1LQ8TEK3 1739 aa6.96□□□□□ -1.3
SHMT1-211ENST00000618902 BTAF1O14981 1849 aa6.95□□□□□ -1.3
SHMT1-211ENST00000618902 SENP3-EIF4A1A0A087X0R7 540 aa6.95□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms