RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 BARGINQ6ZT62 677 aa26.45■■□□□ 1.82
UPF3A-211ENST00000618700 USHBP1Q8N6Y0 703 aa26.44■■□□□ 1.82
UPF3A-211ENST00000618700 KDRP35968 1356 aa26.44■■□□□ 1.82
UPF3A-211ENST00000618700 MEGF6O75095 1541 aa26.41■■□□□ 1.82
UPF3A-211ENST00000618700 ONECUT3O60422 494 aaPredicted RBP26.41■■□□□ 1.82
UPF3A-211ENST00000618700 CCDC184Q52MB2 194 aa26.41■■□□□ 1.82
UPF3A-211ENST00000618700 NUDCQ9Y266 331 aa26.41■■□□□ 1.82
UPF3A-211ENST00000618700 PARP4Q9UKK3 1724 aaKnown RBP26.4■■□□□ 1.82
UPF3A-211ENST00000618700 FAM98CQ17RN3 349 aaKnown RBP26.4■■□□□ 1.82
UPF3A-211ENST00000618700 LRRC37A3O60309 1634 aa26.39■■□□□ 1.81
UPF3A-211ENST00000618700 OVOS2A0A0G2JMS6 1433 aa26.39■■□□□ 1.81
UPF3A-211ENST00000618700 U2SURPO15042 1029 aaKnown RBP26.38■■□□□ 1.81
UPF3A-211ENST00000618700 AEBP1Q8IUX7 1158 aa26.38■■□□□ 1.81
UPF3A-211ENST00000618700 PLEKHG2Q9H7P9 1386 aa26.37■■□□□ 1.81
UPF3A-211ENST00000618700 IL2RBP14784 551 aa26.37■■□□□ 1.81
UPF3A-211ENST00000618700 SULT6B1Q6IMI4 303 aa26.37■■□□□ 1.81
UPF3A-211ENST00000618700 CDCA7Q9BWT1 371 aaPredicted RBP26.37■■□□□ 1.81
UPF3A-211ENST00000618700 MIER1Q8N108 512 aa26.35■■□□□ 1.81
UPF3A-211ENST00000618700 MRS2Q9HD23 443 aa26.35■■□□□ 1.81
UPF3A-211ENST00000618700 PKD1L3Q7Z443 1732 aa26.34■■□□□ 1.81
UPF3A-211ENST00000618700 TNS2Q63HR2 1409 aa26.34■■□□□ 1.81
UPF3A-211ENST00000618700 U2AF1L5P0DN76 240 aaPredicted RBP26.34■■□□□ 1.81
UPF3A-211ENST00000618700 U2AF1Q01081 240 aaKnown RBP eCLIP26.34■■□□□ 1.81
UPF3A-211ENST00000618700 RAPGEF4Q8WZA2 1011 aa26.34■■□□□ 1.81
UPF3A-211ENST00000618700 HMOX1P09601 288 aa26.33■■□□□ 1.81
UPF3A-211ENST00000618700 CCER2I3L3R5 266 aa26.32■■□□□ 1.8
UPF3A-211ENST00000618700 SEPT12Q8IYM1 358 aa26.32■■□□□ 1.8
UPF3A-211ENST00000618700 SHANK3Q9BYB0 1731 aa26.31■■□□□ 1.8
UPF3A-211ENST00000618700 TATP17735 454 aaPredicted RBP26.31■■□□□ 1.8
UPF3A-211ENST00000618700 RSPH6AQ9H0K4 717 aa26.31■■□□□ 1.8
UPF3A-211ENST00000618700 BRWD3Q6RI45 1802 aa26.29■■□□□ 1.8
UPF3A-211ENST00000618700 A0A0G2JS52 829 aa26.28■■□□□ 1.8
UPF3A-211ENST00000618700 FCHSD2O94868 740 aa26.28■■□□□ 1.8
UPF3A-211ENST00000618700 MYT1Q01538 1121 aa26.28■■□□□ 1.8
UPF3A-211ENST00000618700 WDR43Q15061 677 aaKnown RBP eCLIP26.28■■□□□ 1.8
UPF3A-211ENST00000618700 PNISRQ8TF01 805 aaKnown RBP26.28■■□□□ 1.8
UPF3A-211ENST00000618700 DDB1Q16531 1140 aa26.26■■□□□ 1.79
UPF3A-211ENST00000618700 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP26.26■■□□□ 1.79
UPF3A-211ENST00000618700 PRKAR2BP31323 418 aa26.25■■□□□ 1.79
UPF3A-211ENST00000618700 EXOC5O00471 708 aa26.24■■□□□ 1.79
UPF3A-211ENST00000618700 ADAMTS8Q9UP79 889 aa26.24■■□□□ 1.79
UPF3A-211ENST00000618700 ZCRB1Q8TBF4 217 aaKnown RBP26.23■■□□□ 1.79
UPF3A-211ENST00000618700 PLEKHF1Q96S99 279 aa26.23■■□□□ 1.79
UPF3A-211ENST00000618700 ATF5Q9Y2D1 282 aaPredicted RBP26.23■■□□□ 1.79
UPF3A-211ENST00000618700 AMOTQ4VCS5 1084 aa26.21■■□□□ 1.79
UPF3A-211ENST00000618700 SPG7Q9UQ90 795 aa26.21■■□□□ 1.79
UPF3A-211ENST00000618700 PCDH11XQ9BZA7 1347 aa26.2■■□□□ 1.79
UPF3A-211ENST00000618700 PCDH11YQ9BZA8 1340 aa26.2■■□□□ 1.79
UPF3A-211ENST00000618700 PLEKHO1Q53GL0 409 aaPredicted RBP26.2■■□□□ 1.78
UPF3A-211ENST00000618700 KRT27Q7Z3Y8 459 aa26.19■■□□□ 1.78
UPF3A-211ENST00000618700 PHACTR3Q96KR7 559 aa26.19■■□□□ 1.78
UPF3A-211ENST00000618700 CYP27B1O15528 508 aa26.18■■□□□ 1.78
UPF3A-211ENST00000618700 PDE3BQ13370 1112 aa26.18■■□□□ 1.78
UPF3A-211ENST00000618700 MARCH10Q8NA82 808 aaPredicted RBP26.18■■□□□ 1.78
UPF3A-211ENST00000618700 PNNQ9H307 717 aaKnown RBP26.18■■□□□ 1.78
UPF3A-211ENST00000618700 UPF1Q92900 1129 aaKnown RBP eCLIP26.17■■□□□ 1.78
UPF3A-211ENST00000618700 ZNF219Q9P2Y4 722 aaPredicted RBP26.17■■□□□ 1.78
UPF3A-211ENST00000618700 MTHFSDQ2M296 383 aaKnown RBP26.16■■□□□ 1.78
UPF3A-211ENST00000618700 BCL9O00512 1426 aa26.15■■□□□ 1.78
UPF3A-211ENST00000618700 ZNF530Q6P9A1 599 aaPredicted RBP26.15■■□□□ 1.78
UPF3A-211ENST00000618700 DDX54Q8TDD1 881 aaKnown RBP26.15■■□□□ 1.78
UPF3A-211ENST00000618700 PHKG2P15735 406 aa26.14■■□□□ 1.78
UPF3A-211ENST00000618700 GAS2L2Q8NHY3 880 aa26.14■■□□□ 1.78
UPF3A-211ENST00000618700 RUNDC1Q96C34 613 aa26.14■■□□□ 1.78
UPF3A-211ENST00000618700 CCDC146Q8IYE0 955 aa26.13■■□□□ 1.77
UPF3A-211ENST00000618700 EP400Q96L91 3159 aa26.13■■□□□ 1.77
UPF3A-211ENST00000618700 MAPK8IP3Q9UPT6 1336 aa26.13■■□□□ 1.77
UPF3A-211ENST00000618700 IFNL2Q8IZJ0 200 aa26.12■■□□□ 1.77
UPF3A-211ENST00000618700 NEFMP07197 916 aa26.11■■□□□ 1.77
UPF3A-211ENST00000618700 ATXN8OSP0DMR3 200 aa26.11■■□□□ 1.77
UPF3A-211ENST00000618700 NKX1-1Q15270 411 aaPredicted RBP26.11■■□□□ 1.77
UPF3A-211ENST00000618700 FAM182BQ5T319 152 aa26.11■■□□□ 1.77
UPF3A-211ENST00000618700 FAM9BQ8IZU0 186 aa26.11■■□□□ 1.77
UPF3A-211ENST00000618700 ADAMTS7Q9UKP4 1686 aa26.11■■□□□ 1.77
UPF3A-211ENST00000618700 AKAP4Q5JQC9 854 aa26.1■■□□□ 1.77
UPF3A-211ENST00000618700 TOGARAM1Q9Y4F4 1720 aa26.1■■□□□ 1.77
UPF3A-211ENST00000618700 MAP3K5Q99683 1374 aa26.09■■□□□ 1.77
UPF3A-211ENST00000618700 C1orf141Q5JVX7 400 aa26.09■■□□□ 1.77
UPF3A-211ENST00000618700 DOT1LQ8TEK3 1739 aa26.08■■□□□ 1.77
UPF3A-211ENST00000618700 KDM6AO15550 1401 aaPredicted RBP26.08■■□□□ 1.77
UPF3A-211ENST00000618700 NFE2L2Q16236 605 aa26.08■■□□□ 1.77
UPF3A-211ENST00000618700 DSG3P32926 999 aa26.07■■□□□ 1.76
UPF3A-211ENST00000618700 DLG5Q8TDM6 1919 aa26.06■■□□□ 1.76
UPF3A-211ENST00000618700 HSP90AB1P08238 724 aaKnown RBP26.06■■□□□ 1.76
UPF3A-211ENST00000618700 FAM196AQ6ZSG2 479 aa26.06■■□□□ 1.76
UPF3A-211ENST00000618700 SBF2Q86WG5 1849 aa26.06■■□□□ 1.76
UPF3A-211ENST00000618700 TMPOP42166 694 aaKnown RBP26.05■■□□□ 1.76
UPF3A-211ENST00000618700 NHSQ6T4R5 1651 aa26.05■■□□□ 1.76
UPF3A-211ENST00000618700 SCN11AQ9UI33 1791 aa26.05■■□□□ 1.76
UPF3A-211ENST00000618700 DCAF5Q96JK2 942 aa26.04■■□□□ 1.76
UPF3A-211ENST00000618700 MRC1P22897 1456 aa26.04■■□□□ 1.76
UPF3A-211ENST00000618700 GNAT3A8MTJ3 354 aa26.03■■□□□ 1.76
UPF3A-211ENST00000618700 APAF1O14727 1248 aa26.02■■□□□ 1.76
UPF3A-211ENST00000618700 VIRMAQ69YN4 1812 aaKnown RBP26.02■■□□□ 1.76
UPF3A-211ENST00000618700 MPRIPQ6WCQ1 1025 aa26.01■■□□□ 1.75
UPF3A-211ENST00000618700 CEMIPQ8WUJ3 1361 aa26■■□□□ 1.75
UPF3A-211ENST00000618700 HTATSF1O43719 755 aaKnown RBP26■■□□□ 1.75
UPF3A-211ENST00000618700 RRP7AQ9Y3A4 280 aaKnown RBP26■■□□□ 1.75
UPF3A-211ENST00000618700 RNMTO43148 476 aaKnown RBP25.99■■□□□ 1.75
UPF3A-211ENST00000618700 ITGB4P16144 1822 aa25.98■■□□□ 1.75
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms