RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 MEGF6O75095 1541 aa26.29■■□□□ 1.8
CCDC28A-203ENST00000617445 TATP17735 454 aaPredicted RBP26.28■■□□□ 1.8
CCDC28A-203ENST00000617445 MAP2P11137 1827 aaKnown RBP26.28■■□□□ 1.8
CCDC28A-203ENST00000617445 SLC15A2Q16348 729 aa26.27■■□□□ 1.8
CCDC28A-203ENST00000617445 EMILIN1Q9Y6C2 1016 aa26.27■■□□□ 1.8
CCDC28A-203ENST00000617445 WASHC2AQ641Q2 1341 aa26.26■■□□□ 1.79
CCDC28A-203ENST00000617445 USHBP1Q8N6Y0 703 aa26.25■■□□□ 1.79
CCDC28A-203ENST00000617445 ANKRD26Q9UPS8 1709 aa26.25■■□□□ 1.79
CCDC28A-203ENST00000617445 PPM1GO15355 546 aaPredicted RBP26.24■■□□□ 1.79
CCDC28A-203ENST00000617445 PANK3Q9H999 370 aa26.24■■□□□ 1.79
CCDC28A-203ENST00000617445 SHANK3Q9BYB0 1731 aa26.24■■□□□ 1.79
CCDC28A-203ENST00000617445 PRIM1P49642 420 aaKnown RBP26.23■■□□□ 1.79
CCDC28A-203ENST00000617445 SLC27A3Q5K4L6 730 aa26.23■■□□□ 1.79
CCDC28A-203ENST00000617445 POLKQ9UBT6 870 aa26.22■■□□□ 1.79
CCDC28A-203ENST00000617445 CASZ1Q86V15 1759 aa26.22■■□□□ 1.79
CCDC28A-203ENST00000617445 NSD2O96028 1365 aa26.21■■□□□ 1.79
CCDC28A-203ENST00000617445 PCDH11XQ9BZA7 1347 aa26.21■■□□□ 1.79
CCDC28A-203ENST00000617445 PCDH11YQ9BZA8 1340 aa26.21■■□□□ 1.79
CCDC28A-203ENST00000617445 SYTL4Q96C24 671 aaPredicted RBP26.21■■□□□ 1.79
CCDC28A-203ENST00000617445 PPP1R1BQ9UD71 204 aaPredicted RBP26.21■■□□□ 1.79
CCDC28A-203ENST00000617445 NCAPD2Q15021 1401 aa26.19■■□□□ 1.78
CCDC28A-203ENST00000617445 DOT1LQ8TEK3 1739 aa26.19■■□□□ 1.78
CCDC28A-203ENST00000617445 PAPPAQ13219 1627 aa26.17■■□□□ 1.78
CCDC28A-203ENST00000617445 HMGB2P26583 209 aaKnown RBP26.16■■□□□ 1.78
CCDC28A-203ENST00000617445 LRRC4BQ9NT99 713 aa26.16■■□□□ 1.78
CCDC28A-203ENST00000617445 EYA1Q99502 592 aa26.15■■□□□ 1.78
CCDC28A-203ENST00000617445 PDGFDQ9GZP0 370 aaPredicted RBP26.15■■□□□ 1.78
CCDC28A-203ENST00000617445 TNNT2P45379 298 aaPredicted RBP26.14■■□□□ 1.78
CCDC28A-203ENST00000617445 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP26.14■■□□□ 1.78
CCDC28A-203ENST00000617445 SPG7Q9UQ90 795 aa26.14■■□□□ 1.78
CCDC28A-203ENST00000617445 KNSTRNQ9Y448 316 aa26.14■■□□□ 1.78
CCDC28A-203ENST00000617445 ZBTB7AO95365 584 aa26.13■■□□□ 1.77
CCDC28A-203ENST00000617445 MTFR1LQ9H019 292 aa26.13■■□□□ 1.77
CCDC28A-203ENST00000617445 LY75O60449 1722 aa26.12■■□□□ 1.77
CCDC28A-203ENST00000617445 PKD1L3Q7Z443 1732 aa26.12■■□□□ 1.77
CCDC28A-203ENST00000617445 CYP27B1O15528 508 aa26.12■■□□□ 1.77
CCDC28A-203ENST00000617445 PLEKHG2Q9H7P9 1386 aa26.11■■□□□ 1.77
CCDC28A-203ENST00000617445 MORC1Q86VD1 984 aa26.11■■□□□ 1.77
CCDC28A-203ENST00000617445 AKT1S1Q96B36 256 aa26.11■■□□□ 1.77
CCDC28A-203ENST00000617445 PTGER2P43116 358 aa26.09■■□□□ 1.77
CCDC28A-203ENST00000617445 EIF4A2Q14240 407 aaKnown RBP26.09■■□□□ 1.77
CCDC28A-203ENST00000617445 NKX1-1Q15270 411 aaPredicted RBP26.09■■□□□ 1.77
CCDC28A-203ENST00000617445 ZNF827Q17R98 1081 aa26.09■■□□□ 1.77
CCDC28A-203ENST00000617445 ATF5Q9Y2D1 282 aaPredicted RBP26.09■■□□□ 1.77
CCDC28A-203ENST00000617445 QSER1Q2KHR3 1735 aa26.08■■□□□ 1.76
CCDC28A-203ENST00000617445 SLC16A10Q8TF71 515 aa26.07■■□□□ 1.76
CCDC28A-203ENST00000617445 CCNL1Q9UK58 526 aaPredicted RBP26.07■■□□□ 1.76
CCDC28A-203ENST00000617445 KIF7Q2M1P5 1343 aa26.07■■□□□ 1.76
CCDC28A-203ENST00000617445 DCAF8L1A6NGE4 600 aa26.06■■□□□ 1.76
CCDC28A-203ENST00000617445 SMARCC1Q92922 1105 aaPredicted RBP26.05■■□□□ 1.76
CCDC28A-203ENST00000617445 TFCP2L1Q9NZI6 479 aa26.05■■□□□ 1.76
CCDC28A-203ENST00000617445 MPRIPQ6WCQ1 1025 aa26.04■■□□□ 1.76
CCDC28A-203ENST00000617445 ITGB4P16144 1822 aa26.03■■□□□ 1.76
CCDC28A-203ENST00000617445 IFNL2Q8IZJ0 200 aa26.03■■□□□ 1.76
CCDC28A-203ENST00000617445 SGIP1Q9BQI5 828 aa26.03■■□□□ 1.76
CCDC28A-203ENST00000617445 IGSF1Q8N6C5 1336 aa26.03■■□□□ 1.76
CCDC28A-203ENST00000617445 AMER1Q5JTC6 1135 aaPredicted RBP26.02■■□□□ 1.76
CCDC28A-203ENST00000617445 KCNQ4P56696 695 aa26.01■■□□□ 1.75
CCDC28A-203ENST00000617445 PALLDQ8WX93 1383 aa25.99■■□□□ 1.75
CCDC28A-203ENST00000617445 PNPLA7Q6ZV29 1317 aa25.99■■□□□ 1.75
CCDC28A-203ENST00000617445 PHKG2P15735 406 aa25.99■■□□□ 1.75
CCDC28A-203ENST00000617445 TOGARAM1Q9Y4F4 1720 aa25.98■■□□□ 1.75
CCDC28A-203ENST00000617445 PIGBQ92521 554 aa25.98■■□□□ 1.75
CCDC28A-203ENST00000617445 ARXQ96QS3 562 aa25.98■■□□□ 1.75
CCDC28A-203ENST00000617445 PER1O15534 1290 aaPredicted RBP25.96■■□□□ 1.75
CCDC28A-203ENST00000617445 HSP90AB1P08238 724 aaKnown RBP25.96■■□□□ 1.75
CCDC28A-203ENST00000617445 AMOTQ4VCS5 1084 aa25.96■■□□□ 1.75
CCDC28A-203ENST00000617445 PLEKHO1Q53GL0 409 aaPredicted RBP25.96■■□□□ 1.75
CCDC28A-203ENST00000617445 TMOD3Q9NYL9 352 aa25.96■■□□□ 1.75
CCDC28A-203ENST00000617445 TUBGCP6Q96RT7 1819 aa25.95■■□□□ 1.75
CCDC28A-203ENST00000617445 SYT17Q9BSW7 474 aa25.95■■□□□ 1.74
CCDC28A-203ENST00000617445 POLD1P28340 1107 aa25.94■■□□□ 1.74
CCDC28A-203ENST00000617445 FLAD1Q8NFF5 587 aa25.94■■□□□ 1.74
CCDC28A-203ENST00000617445 FHDC1Q9C0D6 1143 aaPredicted RBP25.94■■□□□ 1.74
CCDC28A-203ENST00000617445 C5P01031 1676 aa25.93■■□□□ 1.74
CCDC28A-203ENST00000617445 TAF1LQ8IZX4 1826 aa25.93■■□□□ 1.74
CCDC28A-203ENST00000617445 COL24A1Q17RW2 1714 aa25.93■■□□□ 1.74
CCDC28A-203ENST00000617445 MAP3K5Q99683 1374 aa25.93■■□□□ 1.74
CCDC28A-203ENST00000617445 ERVV-2B6SEH9 535 aa25.92■■□□□ 1.74
CCDC28A-203ENST00000617445 DCAF5Q96JK2 942 aa25.91■■□□□ 1.74
CCDC28A-203ENST00000617445 IL13P35225 146 aa25.9■■□□□ 1.74
CCDC28A-203ENST00000617445 NPC1L1Q9UHC9 1359 aa25.9■■□□□ 1.74
CCDC28A-203ENST00000617445 COL23A1Q86Y22 540 aaPredicted RBP25.89■■□□□ 1.74
CCDC28A-203ENST00000617445 KDRP35968 1356 aa25.89■■□□□ 1.74
CCDC28A-203ENST00000617445 LOC102724428A0A0B4J2F2 783 aa25.88■■□□□ 1.73
CCDC28A-203ENST00000617445 MTHFSP49914 203 aa25.88■■□□□ 1.73
CCDC28A-203ENST00000617445 SIK1P57059 783 aa25.88■■□□□ 1.73
CCDC28A-203ENST00000617445 SULT6B1Q6IMI4 303 aa25.88■■□□□ 1.73
CCDC28A-203ENST00000617445 ZNF530Q6P9A1 599 aaPredicted RBP25.88■■□□□ 1.73
CCDC28A-203ENST00000617445 MSH5O43196 834 aa25.87■■□□□ 1.73
CCDC28A-203ENST00000617445 C1orf141Q5JVX7 400 aa25.86■■□□□ 1.73
CCDC28A-203ENST00000617445 AK7Q96M32 723 aa25.86■■□□□ 1.73
CCDC28A-203ENST00000617445 ASAP1Q9ULH1 1129 aa25.86■■□□□ 1.73
CCDC28A-203ENST00000617445 C4BP0C0L5 1744 aa25.85■■□□□ 1.73
CCDC28A-203ENST00000617445 AEBP1Q8IUX7 1158 aa25.85■■□□□ 1.73
CCDC28A-203ENST00000617445 CC2D1BQ5T0F9 858 aaKnown RBP25.84■■□□□ 1.73
CCDC28A-203ENST00000617445 ATG3Q9NT62 314 aa25.84■■□□□ 1.73
CCDC28A-203ENST00000617445 YY1P25490 414 aa25.82■■□□□ 1.72
CCDC28A-203ENST00000617445 ATP6V1AP38606 617 aa25.81■■□□□ 1.72
CCDC28A-203ENST00000617445 CABP4P57796 275 aa25.81■■□□□ 1.72
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms