RNA–Protein interactions for RNA: ENST00000616033.4

MSH6-214, Transcript of mutS homolog 6, humanhuman

TSL 5 BASIC

Gene MSH6, Length 3,429 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-214ENST00000616033 TERF2IPQ9NYB0 399 aa16■□□□□ 0.15
MSH6-214ENST00000616033 F6X3S4 739 aa16■□□□□ 0.15
MSH6-214ENST00000616033 RRS1Q15050 365 aaKnown RBP16■□□□□ 0.15
MSH6-214ENST00000616033 MEIS3Q99687 375 aa16■□□□□ 0.15
MSH6-214ENST00000616033 PDLIM2Q96JY6 352 aa16■□□□□ 0.15
MSH6-214ENST00000616033 SHPRHQ149N8 1683 aa15.99■□□□□ 0.15
MSH6-214ENST00000616033 REC8O95072 547 aa15.99■□□□□ 0.15
MSH6-214ENST00000616033 FIBPO43427 364 aa15.99■□□□□ 0.15
MSH6-214ENST00000616033 ZBTB9Q96C00 473 aa15.99■□□□□ 0.15
MSH6-214ENST00000616033 YEATS2Q9ULM3 1422 aa15.99■□□□□ 0.15
MSH6-214ENST00000616033 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.99■□□□□ 0.15
MSH6-214ENST00000616033 CWC22Q9HCG8 908 aaKnown RBP15.99■□□□□ 0.15
MSH6-214ENST00000616033 PALD1Q9ULE6 856 aa15.99■□□□□ 0.15
MSH6-214ENST00000616033 HDGFL2Q7Z4V5 671 aaPredicted RBP15.98■□□□□ 0.15
MSH6-214ENST00000616033 DDX54Q8TDD1 881 aaKnown RBP15.98■□□□□ 0.15
MSH6-214ENST00000616033 ERC2O15083 957 aa15.97■□□□□ 0.15
MSH6-214ENST00000616033 GNAI1P63096 354 aa15.97■□□□□ 0.15
MSH6-214ENST00000616033 NUTM2FA1L443 756 aa15.97■□□□□ 0.15
MSH6-214ENST00000616033 ADCY5O95622 1261 aa15.97■□□□□ 0.15
MSH6-214ENST00000616033 API5Q9BZZ5 524 aaKnown RBP15.97■□□□□ 0.15
MSH6-214ENST00000616033 NOLC1Q14978 699 aaKnown RBP eCLIP15.96■□□□□ 0.15
MSH6-214ENST00000616033 USP48Q86UV5 1035 aa15.96■□□□□ 0.15
MSH6-214ENST00000616033 CYP2E1P05181 493 aaPredicted RBP15.96■□□□□ 0.15
MSH6-214ENST00000616033 NFE2L2Q16236 605 aa15.96■□□□□ 0.15
MSH6-214ENST00000616033 MCM10Q7L590 875 aa15.96■□□□□ 0.15
MSH6-214ENST00000616033 ESF1Q9H501 851 aaKnown RBP15.96■□□□□ 0.15
MSH6-214ENST00000616033 DCTPP1Q9H773 170 aa15.96■□□□□ 0.15
MSH6-214ENST00000616033 ANKRD36BQ8N2N9 1353 aa15.96■□□□□ 0.15
MSH6-214ENST00000616033 HS1BP3Q53T59 392 aa15.96■□□□□ 0.14
MSH6-214ENST00000616033 TRPM2O94759 1503 aa15.95■□□□□ 0.14
MSH6-214ENST00000616033 FCHSD2O94868 740 aa15.95■□□□□ 0.14
MSH6-214ENST00000616033 MBD3O95983 291 aa15.95■□□□□ 0.14
MSH6-214ENST00000616033 ABCA6Q8N139 1617 aa15.95■□□□□ 0.14
MSH6-214ENST00000616033 GIMAP6Q6P9H5 292 aa15.94■□□□□ 0.14
MSH6-214ENST00000616033 ZNF771Q7L3S4 317 aaPredicted RBP15.94■□□□□ 0.14
MSH6-214ENST00000616033 SYAP1Q96A49 352 aaPredicted RBP15.94■□□□□ 0.14
MSH6-214ENST00000616033 CNPY2Q9Y2B0 182 aa15.94■□□□□ 0.14
MSH6-214ENST00000616033 SPHKAPQ2M3C7 1700 aa15.94■□□□□ 0.14
MSH6-214ENST00000616033 POGZQ7Z3K3 1410 aa15.94■□□□□ 0.14
MSH6-214ENST00000616033 CCDC94Q9BW85 323 aaPredicted RBP15.94■□□□□ 0.14
MSH6-214ENST00000616033 ABCA9Q8IUA7 1624 aa15.94■□□□□ 0.14
MSH6-214ENST00000616033 IL16Q14005 1332 aa15.93■□□□□ 0.14
MSH6-214ENST00000616033 SMAP1Q8IYB5 467 aaPredicted RBP15.93■□□□□ 0.14
MSH6-214ENST00000616033 NPATQ14207 1427 aa15.93■□□□□ 0.14
MSH6-214ENST00000616033 ATP2B3Q16720 1220 aa15.93■□□□□ 0.14
MSH6-214ENST00000616033 ZNF428Q96B54 188 aa15.93■□□□□ 0.14
MSH6-214ENST00000616033 IL1RAPL2Q9NP60 686 aa15.93■□□□□ 0.14
MSH6-214ENST00000616033 IBTKQ9P2D0 1353 aaPredicted RBP15.93■□□□□ 0.14
MSH6-214ENST00000616033 SLC4A2P04920 1241 aa15.93■□□□□ 0.14
MSH6-214ENST00000616033 CDK19Q9BWU1 502 aa15.93■□□□□ 0.14
MSH6-214ENST00000616033 POLKQ9UBT6 870 aa15.93■□□□□ 0.14
MSH6-214ENST00000616033 U2AF2P26368 475 aaKnown RBP eCLIP15.92■□□□□ 0.142e-9■■■■■ 28.4
MSH6-214ENST00000616033 CEP85Q6P2H3 762 aa15.92■□□□□ 0.14
MSH6-214ENST00000616033 CLEC17AQ6ZS10 378 aa15.92■□□□□ 0.14
MSH6-214ENST00000616033 DRC7Q8IY82 874 aa15.92■□□□□ 0.14
MSH6-214ENST00000616033 CPA1P15085 419 aa15.92■□□□□ 0.14
MSH6-214ENST00000616033 WAPLQ7Z5K2 1190 aa15.92■□□□□ 0.14
MSH6-214ENST00000616033 KIF3AQ9Y496 699 aa15.92■□□□□ 0.14
MSH6-214ENST00000616033 TERF1P54274 439 aa15.91■□□□□ 0.14
MSH6-214ENST00000616033 NME9Q86XW9 330 aa15.91■□□□□ 0.14
MSH6-214ENST00000616033 VGFO15240 615 aaPredicted RBP15.91■□□□□ 0.14
MSH6-214ENST00000616033 MCCP23508 829 aa15.91■□□□□ 0.14
MSH6-214ENST00000616033 ZNF710Q8N1W2 664 aa15.91■□□□□ 0.14
MSH6-214ENST00000616033 NCKAP5LQ9HCH0 1330 aa15.9■□□□□ 0.14
MSH6-214ENST00000616033 MYRIPQ8NFW9 859 aa15.9■□□□□ 0.14
MSH6-214ENST00000616033 ZNF592Q92610 1267 aa15.9■□□□□ 0.14
MSH6-214ENST00000616033 CAMK4Q16566 473 aa15.9■□□□□ 0.14
MSH6-214ENST00000616033 MTERF4Q7Z6M4 381 aaKnown RBP15.9■□□□□ 0.14
MSH6-214ENST00000616033 ANKRD44Q8N8A2 993 aa15.9■□□□□ 0.14
MSH6-214ENST00000616033 PDCL2Q8N4E4 241 aa15.89■□□□□ 0.13
MSH6-214ENST00000616033 MAP3K4Q9Y6R4 1608 aa15.89■□□□□ 0.13
MSH6-214ENST00000616033 TRHP20396 242 aaPredicted RBP15.89■□□□□ 0.13
MSH6-214ENST00000616033 PDE1AP54750 535 aa15.89■□□□□ 0.13
MSH6-214ENST00000616033 CHAF1AQ13111 956 aaPredicted RBP15.89■□□□□ 0.13
MSH6-214ENST00000616033 BCL2L12Q9HB09 334 aa15.89■□□□□ 0.13
MSH6-214ENST00000616033 ABCC4O15439 1325 aa15.89■□□□□ 0.13
MSH6-214ENST00000616033 ZFP91Q96JP5 570 aaPredicted RBP15.88■□□□□ 0.13
MSH6-214ENST00000616033 VPS37CA5D8V6 355 aaPredicted RBP15.88■□□□□ 0.13
MSH6-214ENST00000616033 CFAP74Q9C0B2 1584 aa15.88■□□□□ 0.13
MSH6-214ENST00000616033 MCM5P33992 734 aa15.88■□□□□ 0.13
MSH6-214ENST00000616033 G2E3Q7L622 706 aa15.88■□□□□ 0.13
MSH6-214ENST00000616033 NUTM1Q86Y26 1132 aa15.88■□□□□ 0.13
MSH6-214ENST00000616033 MSH6P52701 1360 aa15.88■□□□□ 0.13
MSH6-214ENST00000616033 BRD1O95696 1058 aa15.87■□□□□ 0.13
MSH6-214ENST00000616033 IFT57Q9NWB7 429 aa15.87■□□□□ 0.13
MSH6-214ENST00000616033 KIDINS220Q9ULH0 1771 aa15.87■□□□□ 0.13
MSH6-214ENST00000616033 NPHP1O15259 732 aa15.87■□□□□ 0.13
MSH6-214ENST00000616033 PHF14O94880 888 aa15.87■□□□□ 0.13
MSH6-214ENST00000616033 SULT6B1Q6IMI4 303 aa15.87■□□□□ 0.13
MSH6-214ENST00000616033 FERMT3Q86UX7 667 aa15.87■□□□□ 0.13
MSH6-214ENST00000616033 ARHGAP45Q92619 1136 aa15.87■□□□□ 0.13
MSH6-214ENST00000616033 PYCARDQ9ULZ3 195 aa15.87■□□□□ 0.13
MSH6-214ENST00000616033 ZSCAN20P17040 1043 aaPredicted RBP15.87■□□□□ 0.13
MSH6-214ENST00000616033 DMTNQ08495 405 aa15.87■□□□□ 0.13
MSH6-214ENST00000616033 UNC5CLQ8IV45 518 aa15.87■□□□□ 0.13
MSH6-214ENST00000616033 SRCIN1Q9C0H9 1055 aa15.87■□□□□ 0.13
MSH6-214ENST00000616033 CFAP44Q96MT7 982 aa15.86■□□□□ 0.13
MSH6-214ENST00000616033 RIOK3O14730 519 aaKnown RBP15.86■□□□□ 0.13
MSH6-214ENST00000616033 C16orf45Q96MC5 204 aaPredicted RBP15.86■□□□□ 0.13
MSH6-214ENST00000616033 NAA30Q147X3 362 aaPredicted RBP15.85■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 98 ms