RNA–Protein interactions for RNA: ENST00000611132.4

VPS36-207, Transcript of vacuolar protein sorting 36 homolog, humanhuman

TSL 1 (best) BASIC

Gene VPS36, Length 4,607 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS36-207ENST00000611132 SLC52A1Q9NWF4 448 aa17.4■□□□□ 0.38
VPS36-207ENST00000611132 HCLS1P14317 486 aaPredicted RBP17.4■□□□□ 0.38
VPS36-207ENST00000611132 CASTP20810 708 aaKnown RBP17.4■□□□□ 0.38
VPS36-207ENST00000611132 LRRFIP1Q32MZ4 808 aaKnown RBP17.4■□□□□ 0.38
VPS36-207ENST00000611132 FMNL2Q96PY5 1086 aa17.4■□□□□ 0.38
VPS36-207ENST00000611132 HDGFL1Q5TGJ6 251 aa17.39■□□□□ 0.37
VPS36-207ENST00000611132 FILIP1Q7Z7B0 1213 aa17.39■□□□□ 0.37
VPS36-207ENST00000611132 CCDC83Q8IWF9 413 aa17.39■□□□□ 0.37
VPS36-207ENST00000611132 C14orf93Q9H972 538 aaKnown RBP17.39■□□□□ 0.37
VPS36-207ENST00000611132 TERF1P54274 439 aa17.39■□□□□ 0.37
VPS36-207ENST00000611132 CCP110O43303 1012 aa17.38■□□□□ 0.37
VPS36-207ENST00000611132 BLOC1S2Q6QNY1 142 aa17.38■□□□□ 0.37
VPS36-207ENST00000611132 FERMT3Q86UX7 667 aa17.38■□□□□ 0.37
VPS36-207ENST00000611132 ERC1Q8IUD2 1116 aa17.38■□□□□ 0.37
VPS36-207ENST00000611132 ANTXR1Q9H6X2 564 aa17.38■□□□□ 0.37
VPS36-207ENST00000611132 SRGAP3O43295 1099 aa17.38■□□□□ 0.37
VPS36-207ENST00000611132 CAMK4Q16566 473 aa17.38■□□□□ 0.37
VPS36-207ENST00000611132 TRMT2AQ8IZ69 625 aaKnown RBP17.38■□□□□ 0.37
VPS36-207ENST00000611132 ZNF830Q96NB3 372 aaPredicted RBP17.38■□□□□ 0.37
VPS36-207ENST00000611132 RBSNQ9H1K0 784 aa17.38■□□□□ 0.37
VPS36-207ENST00000611132 MBIPQ9NS73 344 aa17.38■□□□□ 0.37
VPS36-207ENST00000611132 ZNF330Q9Y3S2 320 aaPredicted RBP17.38■□□□□ 0.37
VPS36-207ENST00000611132 STK3Q13188 491 aa17.38■□□□□ 0.37
VPS36-207ENST00000611132 HOOK1Q9UJC3 728 aaKnown RBP17.38■□□□□ 0.37
VPS36-207ENST00000611132 LIMCH1Q9UPQ0 1083 aa17.38■□□□□ 0.37
VPS36-207ENST00000611132 NOS1P29475 1434 aa17.37■□□□□ 0.37
VPS36-207ENST00000611132 UBE2HP62256 183 aa17.37■□□□□ 0.37
VPS36-207ENST00000611132 NUTM1Q86Y26 1132 aa17.37■□□□□ 0.37
VPS36-207ENST00000611132 ZNF396Q96N95 335 aaPredicted RBP17.37■□□□□ 0.37
VPS36-207ENST00000611132 ZNF445P59923 1031 aa17.37■□□□□ 0.37
VPS36-207ENST00000611132 TRIM29Q14134 588 aa17.37■□□□□ 0.37
VPS36-207ENST00000611132 CWC15Q9P013 229 aaKnown RBP17.37■□□□□ 0.37
VPS36-207ENST00000611132 DHX8Q14562 1220 aaKnown RBP17.37■□□□□ 0.37
VPS36-207ENST00000611132 ZNF521Q96K83 1311 aa17.37■□□□□ 0.37
VPS36-207ENST00000611132 ANKRD36BQ8N2N9 1353 aa17.37■□□□□ 0.37
VPS36-207ENST00000611132 CSB-PGBD3P0DP91 1061 aa17.36■□□□□ 0.37
VPS36-207ENST00000611132 ZGPATQ8N5A5 531 aaKnown RBP17.36■□□□□ 0.37
VPS36-207ENST00000611132 ATP10BO94823 1461 aa17.36■□□□□ 0.37
VPS36-207ENST00000611132 ZNF692Q9BU19 519 aaPredicted RBP17.36■□□□□ 0.37
VPS36-207ENST00000611132 TOMM22Q9NS69 142 aa17.36■□□□□ 0.37
VPS36-207ENST00000611132 RTEL1-TNFRSF6BF6WH68 1400 aa17.36■□□□□ 0.37
VPS36-207ENST00000611132 STX6O43752 255 aa17.36■□□□□ 0.37
VPS36-207ENST00000611132 TNNT1P13805 278 aa17.36■□□□□ 0.37
VPS36-207ENST00000611132 KIF21AQ7Z4S6 1674 aa17.36■□□□□ 0.37
VPS36-207ENST00000611132 TSR1Q2NL82 804 aaKnown RBP17.36■□□□□ 0.37
VPS36-207ENST00000611132 MRPL50Q8N5N7 158 aaKnown RBP17.36■□□□□ 0.37
VPS36-207ENST00000611132 MCM10Q7L590 875 aa17.35■□□□□ 0.37
VPS36-207ENST00000611132 ANKRD44Q8N8A2 993 aa17.35■□□□□ 0.37
VPS36-207ENST00000611132 C16orf45Q96MC5 204 aaPredicted RBP17.35■□□□□ 0.37
VPS36-207ENST00000611132 SCAND2PQ9GZW5 306 aaPredicted RBP17.35■□□□□ 0.37
VPS36-207ENST00000611132 CFAP45Q9UL16 551 aa17.35■□□□□ 0.37
VPS36-207ENST00000611132 SPDYE4A6NLX3 237 aa17.35■□□□□ 0.37
VPS36-207ENST00000611132 PTPN14Q15678 1187 aa17.35■□□□□ 0.37
VPS36-207ENST00000611132 HSP90B2PQ58FF3 399 aa17.35■□□□□ 0.37
VPS36-207ENST00000611132 SH2B1Q9NRF2 756 aaPredicted RBP17.35■□□□□ 0.37
VPS36-207ENST00000611132 PTPRCP08575 1304 aa17.35■□□□□ 0.37
VPS36-207ENST00000611132 TTC12Q9H892 705 aaPredicted RBP17.35■□□□□ 0.37
VPS36-207ENST00000611132 CGNQ9P2M7 1197 aaKnown RBP17.35■□□□□ 0.37
VPS36-207ENST00000611132 CCDC94Q9BW85 323 aaPredicted RBP17.35■□□□□ 0.37
VPS36-207ENST00000611132 NOM1Q5C9Z4 860 aaKnown RBP17.34■□□□□ 0.37
VPS36-207ENST00000611132 OLFM4Q6UX06 510 aa17.34■□□□□ 0.37
VPS36-207ENST00000611132 CEP57L1Q8IYX8 460 aa17.34■□□□□ 0.37
VPS36-207ENST00000611132 EMILIN1Q9Y6C2 1016 aa17.34■□□□□ 0.37
VPS36-207ENST00000611132 F6X3S4 739 aa17.34■□□□□ 0.37
VPS36-207ENST00000611132 ZNF608Q9ULD9 1512 aaPredicted RBP17.34■□□□□ 0.37
VPS36-207ENST00000611132 PES1O00541 588 aaKnown RBP17.34■□□□□ 0.37
VPS36-207ENST00000611132 DCTPP1Q9H773 170 aa17.34■□□□□ 0.37
VPS36-207ENST00000611132 ME1P48163 572 aa17.33■□□□□ 0.37
VPS36-207ENST00000611132 PLEKHM2Q8IWE5 1019 aa17.33■□□□□ 0.37
VPS36-207ENST00000611132 C16orf71Q8IYS4 520 aaPredicted RBP17.33■□□□□ 0.37
VPS36-207ENST00000611132 USP48Q86UV5 1035 aa17.33■□□□□ 0.37
VPS36-207ENST00000611132 PDILTQ8N807 584 aa17.33■□□□□ 0.37
VPS36-207ENST00000611132 RASSF8Q8NHQ8 419 aa17.33■□□□□ 0.37
VPS36-207ENST00000611132 KIF1BPQ96EK5 621 aa17.33■□□□□ 0.37
VPS36-207ENST00000611132 ACBD3Q9H3P7 528 aa17.33■□□□□ 0.37
VPS36-207ENST00000611132 KIF2AO00139 706 aaPredicted RBP17.33■□□□□ 0.36
VPS36-207ENST00000611132 STK38Q15208 465 aa17.33■□□□□ 0.36
VPS36-207ENST00000611132 USP26Q9BXU7 913 aa17.33■□□□□ 0.36
VPS36-207ENST00000611132 DUOX2Q9NRD8 1548 aa17.33■□□□□ 0.36
VPS36-207ENST00000611132 TRDNQ13061 729 aa17.33■□□□□ 0.36
VPS36-207ENST00000611132 GAS2L3Q86XJ1 694 aa17.33■□□□□ 0.36
VPS36-207ENST00000611132 MIS18AQ9NYP9 233 aa17.33■□□□□ 0.36
VPS36-207ENST00000611132 KIAA0556O60303 1618 aa17.33■□□□□ 0.36
VPS36-207ENST00000611132 PPP1R9BQ96SB3 815 aa17.32■□□□□ 0.36
VPS36-207ENST00000611132 RAB11FIP3O75154 756 aa17.32■□□□□ 0.36
VPS36-207ENST00000611132 GLRX3O76003 335 aaKnown RBP17.32■□□□□ 0.36
VPS36-207ENST00000611132 ANAPC15P60006 121 aa17.32■□□□□ 0.36
VPS36-207ENST00000611132 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP17.32■□□□□ 0.36
VPS36-207ENST00000611132 ERICH4A6NGS2 130 aa17.32■□□□□ 0.36
VPS36-207ENST00000611132 PRPF40BQ6NWY9 871 aaKnown RBP17.32■□□□□ 0.36
VPS36-207ENST00000611132 GIMAP6Q6P9H5 292 aa17.32■□□□□ 0.36
VPS36-207ENST00000611132 CKAP2LQ8IYA6 745 aa17.32■□□□□ 0.36
VPS36-207ENST00000611132 KIF18AQ8NI77 898 aa17.32■□□□□ 0.36
VPS36-207ENST00000611132 CLIP2Q9UDT6 1046 aa17.32■□□□□ 0.36
VPS36-207ENST00000611132 PDE1AP54750 535 aa17.31■□□□□ 0.36
VPS36-207ENST00000611132 AIMP1Q12904 312 aaKnown RBP17.31■□□□□ 0.36
VPS36-207ENST00000611132 RIC3Q7Z5B4 369 aa17.31■□□□□ 0.36
VPS36-207ENST00000611132 SMAP1Q8IYB5 467 aaPredicted RBP17.31■□□□□ 0.36
VPS36-207ENST00000611132 VAMP4O75379 141 aa17.31■□□□□ 0.36
VPS36-207ENST00000611132 CCDC70Q6NSX1 233 aa17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms