RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 NSD3Q9BZ95 1437 aa10.57□□□□□ -0.72
CUX1-219ENST00000606749 RGPD2P0DJD1 1756 aa10.57□□□□□ -0.72
CUX1-219ENST00000606749 FLT4P35916 1363 aa10.56□□□□□ -0.72
CUX1-219ENST00000606749 KIF24Q5T7B8 1368 aa10.56□□□□□ -0.72
CUX1-219ENST00000606749 TATP17735 454 aaPredicted RBP10.56□□□□□ -0.72
CUX1-219ENST00000606749 KCNQ4P56696 695 aa10.56□□□□□ -0.72
CUX1-219ENST00000606749 ZNF827Q17R98 1081 aa10.56□□□□□ -0.72
CUX1-219ENST00000606749 AKT1S1Q96B36 256 aa10.56□□□□□ -0.72
CUX1-219ENST00000606749 MTFR1LQ9H019 292 aa10.56□□□□□ -0.72
CUX1-219ENST00000606749 EMILIN1Q9Y6C2 1016 aa10.56□□□□□ -0.72
CUX1-219ENST00000606749 MEGF6O75095 1541 aa10.56□□□□□ -0.72
CUX1-219ENST00000606749 BTAF1O14981 1849 aa10.56□□□□□ -0.72
CUX1-219ENST00000606749 PPM1GO15355 546 aaPredicted RBP10.55□□□□□ -0.72
CUX1-219ENST00000606749 EIF4G2P78344 907 aaKnown RBP eCLIP10.55□□□□□ -0.723e-6■■■■□ 19.7
CUX1-219ENST00000606749 SGIP1Q9BQI5 828 aa10.55□□□□□ -0.72
CUX1-219ENST00000606749 SMG6Q86US8 1419 aaKnown RBP10.55□□□□□ -0.72
CUX1-219ENST00000606749 NSD2O96028 1365 aa10.54□□□□□ -0.72
CUX1-219ENST00000606749 DCAF8L1A6NGE4 600 aa10.54□□□□□ -0.72
CUX1-219ENST00000606749 HSPA5P11021 654 aaKnown RBP10.54□□□□□ -0.72
CUX1-219ENST00000606749 CCER1Q8TC90 406 aaPredicted RBP10.54□□□□□ -0.72
CUX1-219ENST00000606749 POLR3GLQ9BT43 218 aa10.54□□□□□ -0.72
CUX1-219ENST00000606749 WASHC2AQ641Q2 1341 aa10.54□□□□□ -0.72
CUX1-219ENST00000606749 SYT17Q9BSW7 474 aa10.53□□□□□ -0.72
CUX1-219ENST00000606749 FHDC1Q9C0D6 1143 aaPredicted RBP10.53□□□□□ -0.72
CUX1-219ENST00000606749 POLKQ9UBT6 870 aa10.53□□□□□ -0.72
CUX1-219ENST00000606749 PAPPAQ13219 1627 aa10.52□□□□□ -0.73
CUX1-219ENST00000606749 KIF20BQ96Q89 1820 aa10.52□□□□□ -0.73
CUX1-219ENST00000606749 CYP27B1O15528 508 aa10.52□□□□□ -0.73
CUX1-219ENST00000606749 YY1P25490 414 aa10.52□□□□□ -0.73
CUX1-219ENST00000606749 SLC16A10Q8TF71 515 aa10.52□□□□□ -0.73
CUX1-219ENST00000606749 ARXQ96QS3 562 aa10.52□□□□□ -0.73
CUX1-219ENST00000606749 EYA1Q99502 592 aa10.52□□□□□ -0.73
CUX1-219ENST00000606749 PANK3Q9H999 370 aa10.52□□□□□ -0.73
CUX1-219ENST00000606749 TFCP2L1Q9NZI6 479 aa10.52□□□□□ -0.73
CUX1-219ENST00000606749 MYOM1P52179 1685 aa10.52□□□□□ -0.73
CUX1-219ENST00000606749 SHANK3Q9BYB0 1731 aa10.52□□□□□ -0.73
CUX1-219ENST00000606749 PCDH11XQ9BZA7 1347 aa10.52□□□□□ -0.73
CUX1-219ENST00000606749 PCDH11YQ9BZA8 1340 aa10.52□□□□□ -0.73
CUX1-219ENST00000606749 CCNL1Q9UK58 526 aaPredicted RBP10.51□□□□□ -0.73
CUX1-219ENST00000606749 PNPLA7Q6ZV29 1317 aa10.51□□□□□ -0.73
CUX1-219ENST00000606749 TNNT2P45379 298 aaPredicted RBP10.5□□□□□ -0.73
CUX1-219ENST00000606749 NKX1-1Q15270 411 aaPredicted RBP10.5□□□□□ -0.73
CUX1-219ENST00000606749 MPRIPQ6WCQ1 1025 aa10.5□□□□□ -0.73
CUX1-219ENST00000606749 SPG7Q9UQ90 795 aa10.5□□□□□ -0.73
CUX1-219ENST00000606749 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.49□□□□□ -0.731e-6■■□□□ 11.4
CUX1-219ENST00000606749 DOT1LQ8TEK3 1739 aa10.49□□□□□ -0.73
CUX1-219ENST00000606749 MAP2P11137 1827 aaKnown RBP10.49□□□□□ -0.73
CUX1-219ENST00000606749 NCAPD2Q15021 1401 aa10.49□□□□□ -0.73
CUX1-219ENST00000606749 LY75O60449 1722 aa10.48□□□□□ -0.73
CUX1-219ENST00000606749 EIF4A2Q14240 407 aaKnown RBP10.48□□□□□ -0.73
CUX1-219ENST00000606749 COL23A1Q86Y22 540 aaPredicted RBP10.48□□□□□ -0.73
CUX1-219ENST00000606749 PIGBQ92521 554 aa10.48□□□□□ -0.73
CUX1-219ENST00000606749 HMGB2P26583 209 aaKnown RBP10.47□□□□□ -0.73
CUX1-219ENST00000606749 POLD1P28340 1107 aa10.47□□□□□ -0.73
CUX1-219ENST00000606749 SMARCC1Q92922 1105 aaPredicted RBP10.47□□□□□ -0.73
CUX1-219ENST00000606749 MSH5O43196 834 aa10.46□□□□□ -0.73
CUX1-219ENST00000606749 IFNL2Q8IZJ0 200 aa10.46□□□□□ -0.73
CUX1-219ENST00000606749 PALLDQ8WX93 1383 aa10.46□□□□□ -0.74
CUX1-219ENST00000606749 MAP3K5Q99683 1374 aa10.46□□□□□ -0.74
CUX1-219ENST00000606749 QSER1Q2KHR3 1735 aa10.45□□□□□ -0.74
CUX1-219ENST00000606749 ANKRD26Q9UPS8 1709 aa10.45□□□□□ -0.74
CUX1-219ENST00000606749 PHKG2P15735 406 aa10.45□□□□□ -0.74
CUX1-219ENST00000606749 MORC1Q86VD1 984 aa10.45□□□□□ -0.74
CUX1-219ENST00000606749 IGSF1Q8N6C5 1336 aa10.44□□□□□ -0.74
CUX1-219ENST00000606749 FLAD1Q8NFF5 587 aa10.44□□□□□ -0.74
CUX1-219ENST00000606749 TMOD3Q9NYL9 352 aa10.44□□□□□ -0.74
CUX1-219ENST00000606749 ASAP1Q9ULH1 1129 aa10.44□□□□□ -0.74
CUX1-219ENST00000606749 KNSTRNQ9Y448 316 aa10.44□□□□□ -0.74
CUX1-219ENST00000606749 PKD1L3Q7Z443 1732 aa10.44□□□□□ -0.74
CUX1-219ENST00000606749 TUBGCP6Q96RT7 1819 aa10.43□□□□□ -0.74
CUX1-219ENST00000606749 LOC102724428A0A0B4J2F2 783 aa10.43□□□□□ -0.74
CUX1-219ENST00000606749 SIK1P57059 783 aa10.43□□□□□ -0.74
CUX1-219ENST00000606749 GPR162Q16538 588 aa10.43□□□□□ -0.74
CUX1-219ENST00000606749 KLHL34Q8N239 644 aa10.43□□□□□ -0.74
CUX1-219ENST00000606749 ITGB4P16144 1822 aa10.42□□□□□ -0.74
CUX1-219ENST00000606749 COL24A1Q17RW2 1714 aa10.42□□□□□ -0.74
CUX1-219ENST00000606749 PLEKHO1Q53GL0 409 aaPredicted RBP10.42□□□□□ -0.74
CUX1-219ENST00000606749 AMER1Q5JTC6 1135 aaPredicted RBP10.42□□□□□ -0.74
CUX1-219ENST00000606749 MSL1Q68DK7 614 aa10.42□□□□□ -0.74
CUX1-219ENST00000606749 SMIM5Q71RC9 77 aa10.42□□□□□ -0.74
CUX1-219ENST00000606749 AMIGO3Q86WK7 504 aa10.42□□□□□ -0.74
CUX1-219ENST00000606749 NLGN2Q8NFZ4 835 aa10.42□□□□□ -0.74
CUX1-219ENST00000606749 AK7Q96M32 723 aa10.42□□□□□ -0.74
CUX1-219ENST00000606749 ATG3Q9NT62 314 aa10.42□□□□□ -0.74
CUX1-219ENST00000606749 TOGARAM1Q9Y4F4 1720 aa10.41□□□□□ -0.74
CUX1-219ENST00000606749 PLEKHG2Q9H7P9 1386 aa10.41□□□□□ -0.74
CUX1-219ENST00000606749 KIF7Q2M1P5 1343 aa10.41□□□□□ -0.74
CUX1-219ENST00000606749 ERVV-2B6SEH9 535 aa10.41□□□□□ -0.74
CUX1-219ENST00000606749 ATP6V1AP38606 617 aa10.41□□□□□ -0.74
CUX1-219ENST00000606749 ITPK1Q13572 414 aa10.41□□□□□ -0.74
CUX1-219ENST00000606749 AMOTQ4VCS5 1084 aa10.41□□□□□ -0.74
CUX1-219ENST00000606749 LINC00116Q8NCU8 138 aa10.41□□□□□ -0.74
CUX1-219ENST00000606749 DCAF5Q96JK2 942 aa10.41□□□□□ -0.74
CUX1-219ENST00000606749 UTRNP46939 3433 aa10.4□□□□□ -0.74
CUX1-219ENST00000606749 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.4□□□□□ -0.74
CUX1-219ENST00000606749 PER1O15534 1290 aaPredicted RBP10.4□□□□□ -0.74
CUX1-219ENST00000606749 HSP90AB1P08238 724 aaKnown RBP10.4□□□□□ -0.74
CUX1-219ENST00000606749 IL13P35225 146 aa10.4□□□□□ -0.74
CUX1-219ENST00000606749 AEBP1Q8IUX7 1158 aa10.4□□□□□ -0.74
CUX1-219ENST00000606749 ZNF784Q8NCA9 323 aaPredicted RBP10.4□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 88.8 ms