RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 PTF1AQ7RTS3 328 aa26.44■■□□□ 1.82
SHKBP1-221ENST00000599833 ZNF316A6NFI3 1004 aaPredicted RBP26.43■■□□□ 1.82
SHKBP1-221ENST00000599833 TRIM37O94972 964 aa26.43■■□□□ 1.82
SHKBP1-221ENST00000599833 PLEKHG2Q9H7P9 1386 aa26.43■■□□□ 1.82
SHKBP1-221ENST00000599833 AEBP1Q8IUX7 1158 aa26.42■■□□□ 1.82
SHKBP1-221ENST00000599833 ZCRB1Q8TBF4 217 aaKnown RBP26.42■■□□□ 1.82
SHKBP1-221ENST00000599833 RAPGEF4Q8WZA2 1011 aa26.42■■□□□ 1.82
SHKBP1-221ENST00000599833 TATP17735 454 aaPredicted RBP26.41■■□□□ 1.82
SHKBP1-221ENST00000599833 DEFB132Q7Z7B7 95 aa26.41■■□□□ 1.82
SHKBP1-221ENST00000599833 DOT1LQ8TEK3 1739 aa26.4■■□□□ 1.82
SHKBP1-221ENST00000599833 TOGARAM1Q9Y4F4 1720 aa26.39■■□□□ 1.82
SHKBP1-221ENST00000599833 RGPD3A6NKT7 1758 aaPredicted RBP26.38■■□□□ 1.81
SHKBP1-221ENST00000599833 RGPD4Q7Z3J3 1758 aa26.38■■□□□ 1.81
SHKBP1-221ENST00000599833 CYP27B1O15528 508 aa26.37■■□□□ 1.81
SHKBP1-221ENST00000599833 RREB1Q92766 1687 aa26.37■■□□□ 1.81
SHKBP1-221ENST00000599833 DIAPH1O60610 1272 aaKnown RBP26.36■■□□□ 1.81
SHKBP1-221ENST00000599833 DDX54Q8TDD1 881 aaKnown RBP26.36■■□□□ 1.81
SHKBP1-221ENST00000599833 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP26.36■■□□□ 1.81
SHKBP1-221ENST00000599833 BTAF1O14981 1849 aa26.35■■□□□ 1.81
SHKBP1-221ENST00000599833 KCNQ2O43526 872 aa26.35■■□□□ 1.81
SHKBP1-221ENST00000599833 SULT6B1Q6IMI4 303 aa26.35■■□□□ 1.81
SHKBP1-221ENST00000599833 BCL11BQ9C0K0 894 aaPredicted RBP26.34■■□□□ 1.81
SHKBP1-221ENST00000599833 PCDH11XQ9BZA7 1347 aa26.34■■□□□ 1.81
SHKBP1-221ENST00000599833 PCDH11YQ9BZA8 1340 aa26.34■■□□□ 1.81
SHKBP1-221ENST00000599833 CAMKK2Q96RR4 588 aa26.33■■□□□ 1.81
SHKBP1-221ENST00000599833 ITGB4P16144 1822 aa26.31■■□□□ 1.8
SHKBP1-221ENST00000599833 RALBP1Q15311 655 aa26.31■■□□□ 1.8
SHKBP1-221ENST00000599833 NUP188Q5SRE5 1749 aa26.31■■□□□ 1.8
SHKBP1-221ENST00000599833 EN1Q05925 392 aaPredicted RBP26.3■■□□□ 1.8
SHKBP1-221ENST00000599833 NKX1-1Q15270 411 aaPredicted RBP26.3■■□□□ 1.8
SHKBP1-221ENST00000599833 ACSBG1Q96GR2 724 aa26.3■■□□□ 1.8
SHKBP1-221ENST00000599833 KAT6BQ8WYB5 2073 aa26.3■■□□□ 1.8
SHKBP1-221ENST00000599833 APBA3O96018 575 aa26.29■■□□□ 1.8
SHKBP1-221ENST00000599833 SF3B2Q13435 895 aaKnown RBP26.29■■□□□ 1.8
SHKBP1-221ENST00000599833 HMOX1P09601 288 aa26.28■■□□□ 1.8
SHKBP1-221ENST00000599833 BAG6P46379 1132 aa26.28■■□□□ 1.8
SHKBP1-221ENST00000599833 SPG7Q9UQ90 795 aa26.28■■□□□ 1.8
SHKBP1-221ENST00000599833 PHKG2P15735 406 aa26.27■■□□□ 1.8
SHKBP1-221ENST00000599833 EZH2Q15910 746 aaKnown RBP26.27■■□□□ 1.8
SHKBP1-221ENST00000599833 PRKRIP1Q9H875 184 aaPredicted RBP26.27■■□□□ 1.8
SHKBP1-221ENST00000599833 PLSCR1O15162 318 aa26.25■■□□□ 1.79
SHKBP1-221ENST00000599833 SRCAPQ6ZRS2 3230 aa26.25■■□□□ 1.79
SHKBP1-221ENST00000599833 CFAP53Q96M91 514 aa26.24■■□□□ 1.79
SHKBP1-221ENST00000599833 ADAMTS7Q9UKP4 1686 aa26.24■■□□□ 1.79
SHKBP1-221ENST00000599833 KDM6AO15550 1401 aaPredicted RBP26.23■■□□□ 1.79
SHKBP1-221ENST00000599833 MYBBP1AQ9BQG0 1328 aaKnown RBP26.23■■□□□ 1.79
SHKBP1-221ENST00000599833 PRIM1P49642 420 aaKnown RBP26.23■■□□□ 1.79
SHKBP1-221ENST00000599833 PROM2Q8N271 834 aa26.23■■□□□ 1.79
SHKBP1-221ENST00000599833 VIRMAQ69YN4 1812 aaKnown RBP26.23■■□□□ 1.79
SHKBP1-221ENST00000599833 LY75O60449 1722 aa26.22■■□□□ 1.79
SHKBP1-221ENST00000599833 AMOTQ4VCS5 1084 aa26.22■■□□□ 1.79
SHKBP1-221ENST00000599833 PLEKHO1Q53GL0 409 aaPredicted RBP26.22■■□□□ 1.79
SHKBP1-221ENST00000599833 IFNL2Q8IZJ0 200 aa26.22■■□□□ 1.79
SHKBP1-221ENST00000599833 RSPH6AQ9H0K4 717 aa26.22■■□□□ 1.79
SHKBP1-221ENST00000599833 U2SURPO15042 1029 aaKnown RBP26.21■■□□□ 1.79
SHKBP1-221ENST00000599833 SCN11AQ9UI33 1791 aa26.2■■□□□ 1.79
SHKBP1-221ENST00000599833 PAPPAQ13219 1627 aa26.18■■□□□ 1.78
SHKBP1-221ENST00000599833 ZNF530Q6P9A1 599 aaPredicted RBP26.18■■□□□ 1.78
SHKBP1-221ENST00000599833 MTHFSDQ2M296 383 aaKnown RBP26.17■■□□□ 1.78
SHKBP1-221ENST00000599833 PHACTR3Q96KR7 559 aa26.15■■□□□ 1.78
SHKBP1-221ENST00000599833 NUDCQ9Y266 331 aa26.15■■□□□ 1.78
SHKBP1-221ENST00000599833 U2AF1L5P0DN76 240 aaPredicted RBP26.13■■□□□ 1.77
SHKBP1-221ENST00000599833 PRKAR2BP31323 418 aa26.13■■□□□ 1.77
SHKBP1-221ENST00000599833 U2AF1Q01081 240 aaKnown RBP eCLIP26.13■■□□□ 1.77
SHKBP1-221ENST00000599833 SYTL4Q96C24 671 aaPredicted RBP26.13■■□□□ 1.77
SHKBP1-221ENST00000599833 MRC1P22897 1456 aa26.12■■□□□ 1.77
SHKBP1-221ENST00000599833 FCHSD2O94868 740 aa26.12■■□□□ 1.77
SHKBP1-221ENST00000599833 TXNRD1Q16881 649 aa26.12■■□□□ 1.77
SHKBP1-221ENST00000599833 PIGBQ92521 554 aa26.12■■□□□ 1.77
SHKBP1-221ENST00000599833 DCAF5Q96JK2 942 aa26.12■■□□□ 1.77
SHKBP1-221ENST00000599833 AKAP4Q5JQC9 854 aa26.11■■□□□ 1.77
SHKBP1-221ENST00000599833 PLEKHF1Q96S99 279 aa26.1■■□□□ 1.77
SHKBP1-221ENST00000599833 LRRC4BQ9NT99 713 aa26.1■■□□□ 1.77
SHKBP1-221ENST00000599833 ERVV-2B6SEH9 535 aa26.09■■□□□ 1.77
SHKBP1-221ENST00000599833 MPRIPQ6WCQ1 1025 aa26.09■■□□□ 1.77
SHKBP1-221ENST00000599833 SIPA1L3O60292 1781 aaPredicted RBP26.08■■□□□ 1.77
SHKBP1-221ENST00000599833 HSP90AB1P08238 724 aaKnown RBP26.08■■□□□ 1.77
SHKBP1-221ENST00000599833 LGR6Q9HBX8 967 aa26.08■■□□□ 1.77
SHKBP1-221ENST00000599833 ANO8Q9HCE9 1232 aaPredicted RBP26.08■■□□□ 1.77
SHKBP1-221ENST00000599833 TAF1LQ8IZX4 1826 aa26.07■■□□□ 1.76
SHKBP1-221ENST00000599833 C1orf141Q5JVX7 400 aa26.07■■□□□ 1.76
SHKBP1-221ENST00000599833 DLG5Q8TDM6 1919 aa26.07■■□□□ 1.76
SHKBP1-221ENST00000599833 CCDC184Q52MB2 194 aa26.06■■□□□ 1.76
SHKBP1-221ENST00000599833 MAP3K5Q99683 1374 aa26.05■■□□□ 1.76
SHKBP1-221ENST00000599833 RNMTO43148 476 aaKnown RBP26.04■■□□□ 1.76
SHKBP1-221ENST00000599833 GAS2L2Q8NHY3 880 aa26.04■■□□□ 1.76
SHKBP1-221ENST00000599833 PALLDQ8WX93 1383 aa26.04■■□□□ 1.76
SHKBP1-221ENST00000599833 ATG3Q9NT62 314 aa26.03■■□□□ 1.76
SHKBP1-221ENST00000599833 TMOD3Q9NYL9 352 aa26.03■■□□□ 1.76
SHKBP1-221ENST00000599833 ASAP1Q9ULH1 1129 aa26.03■■□□□ 1.76
SHKBP1-221ENST00000599833 ZNF831Q5JPB2 1677 aa26.03■■□□□ 1.76
SHKBP1-221ENST00000599833 TUBGCP6Q96RT7 1819 aa26.02■■□□□ 1.76
SHKBP1-221ENST00000599833 KCNQ4P56696 695 aa26.02■■□□□ 1.76
SHKBP1-221ENST00000599833 CEMIPQ8WUJ3 1361 aa26.02■■□□□ 1.76
SHKBP1-221ENST00000599833 C5P01031 1676 aa26.02■■□□□ 1.76
SHKBP1-221ENST00000599833 SLC27A3Q5K4L6 730 aa26.01■■□□□ 1.75
SHKBP1-221ENST00000599833 IL17REQ8NFR9 667 aa26.01■■□□□ 1.75
SHKBP1-221ENST00000599833 CASZ1Q86V15 1759 aa26■■□□□ 1.75
SHKBP1-221ENST00000599833 NFATC2IPQ8NCF5 419 aa25.99■■□□□ 1.75
SHKBP1-221ENST00000599833 SLC52A2Q9HAB3 445 aa25.99■■□□□ 1.75
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms