RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 RTF1Q92541 710 aaKnown RBP18.39■□□□□ 0.53
VRK3-217ENST00000599538 ZBTB7BO15156 539 aaPredicted RBP18.38■□□□□ 0.53
VRK3-217ENST00000599538 GAS2L2Q8NHY3 880 aa18.38■□□□□ 0.53
VRK3-217ENST00000599538 NOP58Q9Y2X3 529 aaKnown RBP18.38■□□□□ 0.53
VRK3-217ENST00000599538 HDAC1Q13547 482 aaPredicted RBP18.38■□□□□ 0.53
VRK3-217ENST00000599538 NBPF6Q5VWK0 638 aa18.38■□□□□ 0.53
VRK3-217ENST00000599538 LMOD2Q6P5Q4 547 aa18.38■□□□□ 0.53
VRK3-217ENST00000599538 NBPF4Q96M43 638 aa18.38■□□□□ 0.53
VRK3-217ENST00000599538 ABCC4O15439 1325 aa18.38■□□□□ 0.53
VRK3-217ENST00000599538 STRCP1A6NGW2 1772 aa18.37■□□□□ 0.53
VRK3-217ENST00000599538 RTL1A6NKG5 1358 aa18.37■□□□□ 0.53
VRK3-217ENST00000599538 C1orf167Q5SNV9 1468 aa18.37■□□□□ 0.53
VRK3-217ENST00000599538 C19orf44Q9H6X5 657 aa18.37■□□□□ 0.53
VRK3-217ENST00000599538 C1orf115Q9H7X2 142 aa18.37■□□□□ 0.53
VRK3-217ENST00000599538 GCP02774 474 aa18.36■□□□□ 0.53
VRK3-217ENST00000599538 ERICH6Q7L0X2 663 aa18.36■□□□□ 0.53
VRK3-217ENST00000599538 TSPYL4Q9UJ04 414 aa18.36■□□□□ 0.53
VRK3-217ENST00000599538 MSH6P52701 1360 aa18.35■□□□□ 0.53
VRK3-217ENST00000599538 KIAA0232Q92628 1395 aa18.35■□□□□ 0.53
VRK3-217ENST00000599538 DDX17Q92841 729 aaKnown RBP18.35■□□□□ 0.53
VRK3-217ENST00000599538 LRRC59Q96AG4 307 aaKnown RBP18.35■□□□□ 0.53
VRK3-217ENST00000599538 KRT28Q7Z3Y7 464 aa18.35■□□□□ 0.53
VRK3-217ENST00000599538 KCNH5Q8NCM2 988 aa18.35■□□□□ 0.53
VRK3-217ENST00000599538 IL17REQ8NFR9 667 aa18.35■□□□□ 0.53
VRK3-217ENST00000599538 RGPD2P0DJD1 1756 aa18.35■□□□□ 0.53
VRK3-217ENST00000599538 TMEM94Q12767 1356 aa18.34■□□□□ 0.53
VRK3-217ENST00000599538 GNAT3A8MTJ3 354 aa18.34■□□□□ 0.53
VRK3-217ENST00000599538 TRPM3Q9HCF6 1732 aaPredicted RBP18.33■□□□□ 0.53
VRK3-217ENST00000599538 SEC24BO95487 1268 aa18.33■□□□□ 0.52
VRK3-217ENST00000599538 SMC5Q8IY18 1101 aa18.33■□□□□ 0.52
VRK3-217ENST00000599538 RGS12O14924 1447 aa18.33■□□□□ 0.52
VRK3-217ENST00000599538 ARHGEF25Q86VW2 580 aa18.32■□□□□ 0.52
VRK3-217ENST00000599538 API5Q9BZZ5 524 aaKnown RBP18.32■□□□□ 0.52
VRK3-217ENST00000599538 ZBTB47Q9UFB7 747 aaPredicted RBP18.32■□□□□ 0.52
VRK3-217ENST00000599538 MAP3K5Q99683 1374 aa18.32■□□□□ 0.52
VRK3-217ENST00000599538 LRRC37A3O60309 1634 aa18.31■□□□□ 0.52
VRK3-217ENST00000599538 HTATSF1O43719 755 aaKnown RBP18.31■□□□□ 0.52
VRK3-217ENST00000599538 SIRT2Q8IXJ6 389 aa18.31■□□□□ 0.52
VRK3-217ENST00000599538 AXIN2Q9Y2T1 843 aa18.31■□□□□ 0.52
VRK3-217ENST00000599538 SLIT3O75094 1523 aa18.3■□□□□ 0.52
VRK3-217ENST00000599538 MST1RQ04912 1400 aa18.3■□□□□ 0.52
VRK3-217ENST00000599538 SLC4A2P04920 1241 aa18.3■□□□□ 0.52
VRK3-217ENST00000599538 VIRMAQ69YN4 1812 aaKnown RBP18.3■□□□□ 0.52
VRK3-217ENST00000599538 USP19O94966 1318 aa18.3■□□□□ 0.52
VRK3-217ENST00000599538 PHRF1Q9P1Y6 1649 aaKnown RBP18.29■□□□□ 0.52
VRK3-217ENST00000599538 G2E3Q7L622 706 aa18.29■□□□□ 0.52
VRK3-217ENST00000599538 ATF3P18847 181 aa18.28■□□□□ 0.52
VRK3-217ENST00000599538 INTS3Q68E01 1043 aaKnown RBP18.27■□□□□ 0.52
VRK3-217ENST00000599538 LGR6Q9HBX8 967 aa18.27■□□□□ 0.52
VRK3-217ENST00000599538 KIF1AQ12756 1690 aa18.27■□□□□ 0.52
VRK3-217ENST00000599538 HAP1P54257 671 aaPredicted RBP18.26■□□□□ 0.51
VRK3-217ENST00000599538 NECTIN2Q92692 538 aa18.26■□□□□ 0.51
VRK3-217ENST00000599538 ZC3H6P61129 1189 aaKnown RBP18.26■□□□□ 0.51
VRK3-217ENST00000599538 ANKRD24Q8TF21 1146 aa18.26■□□□□ 0.51
VRK3-217ENST00000599538 NUCB1Q02818 461 aa18.25■□□□□ 0.51
VRK3-217ENST00000599538 TAF7Q15545 349 aaPredicted RBP18.25■□□□□ 0.51
VRK3-217ENST00000599538 LNPKQ9C0E8 428 aa18.25■□□□□ 0.51
VRK3-217ENST00000599538 MED1Q15648 1581 aaPredicted RBP18.25■□□□□ 0.51
VRK3-217ENST00000599538 ALS2Q96Q42 1657 aa18.25■□□□□ 0.51
VRK3-217ENST00000599538 F6X3S4 739 aa18.24■□□□□ 0.51
VRK3-217ENST00000599538 RGPD5Q99666 1765 aa18.24■□□□□ 0.51
VRK3-217ENST00000599538 SLC4A3P48751 1232 aa18.23■□□□□ 0.51
VRK3-217ENST00000599538 PTPRCP08575 1304 aa18.23■□□□□ 0.51
VRK3-217ENST00000599538 CEMIPQ8WUJ3 1361 aa18.23■□□□□ 0.51
VRK3-217ENST00000599538 CHMP4BQ9H444 224 aaKnown RBP18.23■□□□□ 0.51
VRK3-217ENST00000599538 KDM4FA0A1W2PPD8 638 aa18.22■□□□□ 0.51
VRK3-217ENST00000599538 CABLES1Q8TDN4 633 aa18.22■□□□□ 0.51
VRK3-217ENST00000599538 CHD1LQ86WJ1 897 aa18.22■□□□□ 0.51
VRK3-217ENST00000599538 MEIS3Q99687 375 aa18.22■□□□□ 0.51
VRK3-217ENST00000599538 PXDNQ92626 1479 aa18.21■□□□□ 0.51
VRK3-217ENST00000599538 ANKRD45Q5TZF3 282 aa18.21■□□□□ 0.51
VRK3-217ENST00000599538 ZNF530Q6P9A1 599 aaPredicted RBP18.21■□□□□ 0.51
VRK3-217ENST00000599538 DCCP43146 1447 aa18.21■□□□□ 0.51
VRK3-217ENST00000599538 NCAPD2Q15021 1401 aa18.21■□□□□ 0.51
VRK3-217ENST00000599538 KCNQ3O43525 872 aa18.2■□□□□ 0.5
VRK3-217ENST00000599538 MYT1Q01538 1121 aa18.2■□□□□ 0.5
VRK3-217ENST00000599538 MPRIPQ6WCQ1 1025 aa18.2■□□□□ 0.5
VRK3-217ENST00000599538 SLC4A10Q6U841 1118 aa18.2■□□□□ 0.5
VRK3-217ENST00000599538 CADPS2Q86UW7 1296 aa18.2■□□□□ 0.5
VRK3-217ENST00000599538 XIRP1Q702N8 1843 aaKnown RBP18.19■□□□□ 0.5
VRK3-217ENST00000599538 ATP10DQ9P241 1426 aa18.19■□□□□ 0.5
VRK3-217ENST00000599538 NCOA3Q9Y6Q9 1424 aa18.19■□□□□ 0.5
VRK3-217ENST00000599538 ERBB3P21860 1342 aa18.19■□□□□ 0.5
VRK3-217ENST00000599538 FAM208AQ9UK61 1670 aaKnown RBP18.19■□□□□ 0.5
VRK3-217ENST00000599538 GCC1Q96CN9 775 aa18.19■□□□□ 0.5
VRK3-217ENST00000599538 PLEKHO1Q53GL0 409 aaPredicted RBP18.18■□□□□ 0.5
VRK3-217ENST00000599538 AKAP4Q5JQC9 854 aa18.18■□□□□ 0.5
VRK3-217ENST00000599538 CCDC30Q5VVM6 783 aa18.18■□□□□ 0.5
VRK3-217ENST00000599538 DDRGK1Q96HY6 314 aa18.18■□□□□ 0.5
VRK3-217ENST00000599538 STK31Q9BXU1 1019 aa18.18■□□□□ 0.5
VRK3-217ENST00000599538 FLIIQ13045 1269 aa18.17■□□□□ 0.5
VRK3-217ENST00000599538 BABAM1Q9NWV8 329 aa18.17■□□□□ 0.5
VRK3-217ENST00000599538 LMTK3Q96Q04 1460 aa18.17■□□□□ 0.5
VRK3-217ENST00000599538 STRCQ7RTU9 1775 aa18.17■□□□□ 0.5
VRK3-217ENST00000599538 LMO7Q8WWI1 1683 aa18.17■□□□□ 0.5
VRK3-217ENST00000599538 CEP85Q6P2H3 762 aa18.16■□□□□ 0.5
VRK3-217ENST00000599538 CAMTA1Q9Y6Y1 1673 aa18.16■□□□□ 0.5
VRK3-217ENST00000599538 NPHP3Q7Z494 1330 aa18.16■□□□□ 0.5
VRK3-217ENST00000599538 EIF4A1P60842 406 aaKnown RBP18.16■□□□□ 0.5
VRK3-217ENST00000599538 CHRNA2Q15822 529 aa18.16■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms