RNA–Protein interactions for RNA: ENST00000597901.1

LIG1-215, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-215ENST00000597901 RREB1Q92766 1687 aa20.69■□□□□ 0.9
LIG1-215ENST00000597901 SLC15A2Q16348 729 aa20.68■□□□□ 0.9
LIG1-215ENST00000597901 EYA1Q99502 592 aa20.68■□□□□ 0.9
LIG1-215ENST00000597901 KNSTRNQ9Y448 316 aa20.68■□□□□ 0.9
LIG1-215ENST00000597901 MORC1Q86VD1 984 aa20.67■□□□□ 0.9
LIG1-215ENST00000597901 FAM208AQ9UK61 1670 aaKnown RBP20.67■□□□□ 0.9
LIG1-215ENST00000597901 NUP188Q5SRE5 1749 aa20.67■□□□□ 0.9
LIG1-215ENST00000597901 KIF20BQ96Q89 1820 aa20.67■□□□□ 0.9
LIG1-215ENST00000597901 PDGFDQ9GZP0 370 aaPredicted RBP20.66■□□□□ 0.9
LIG1-215ENST00000597901 SPON1Q9HCB6 807 aa20.66■□□□□ 0.9
LIG1-215ENST00000597901 PPP1R1BQ9UD71 204 aaPredicted RBP20.66■□□□□ 0.9
LIG1-215ENST00000597901 KIF7Q2M1P5 1343 aa20.66■□□□□ 0.9
LIG1-215ENST00000597901 LRRC4BQ9NT99 713 aa20.65■□□□□ 0.9
LIG1-215ENST00000597901 CYP27B1O15528 508 aa20.64■□□□□ 0.89
LIG1-215ENST00000597901 EIF4A2Q14240 407 aaKnown RBP20.64■□□□□ 0.89
LIG1-215ENST00000597901 RGPD2P0DJD1 1756 aa20.63■□□□□ 0.89
LIG1-215ENST00000597901 RGPD3A6NKT7 1758 aaPredicted RBP20.62■□□□□ 0.89
LIG1-215ENST00000597901 RGPD4Q7Z3J3 1758 aa20.62■□□□□ 0.89
LIG1-215ENST00000597901 NSD2O96028 1365 aa20.62■□□□□ 0.89
LIG1-215ENST00000597901 PCDH11XQ9BZA7 1347 aa20.62■□□□□ 0.89
LIG1-215ENST00000597901 PCDH11YQ9BZA8 1340 aa20.62■□□□□ 0.89
LIG1-215ENST00000597901 SLC27A3Q5K4L6 730 aa20.62■□□□□ 0.89
LIG1-215ENST00000597901 NHSQ6T4R5 1651 aa20.61■□□□□ 0.89
LIG1-215ENST00000597901 AMER1Q5JTC6 1135 aaPredicted RBP20.61■□□□□ 0.89
LIG1-215ENST00000597901 SPG7Q9UQ90 795 aa20.61■□□□□ 0.89
LIG1-215ENST00000597901 PER1O15534 1290 aaPredicted RBP20.6■□□□□ 0.89
LIG1-215ENST00000597901 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.6■□□□□ 0.89
LIG1-215ENST00000597901 ZBTB7AO95365 584 aa20.59■□□□□ 0.89
LIG1-215ENST00000597901 KCNQ4P56696 695 aa20.59■□□□□ 0.89
LIG1-215ENST00000597901 NKX1-1Q15270 411 aaPredicted RBP20.59■□□□□ 0.89
LIG1-215ENST00000597901 DCAF8L1A6NGE4 600 aa20.58■□□□□ 0.89
LIG1-215ENST00000597901 ZNF827Q17R98 1081 aa20.58■□□□□ 0.89
LIG1-215ENST00000597901 ATF5Q9Y2D1 282 aaPredicted RBP20.58■□□□□ 0.89
LIG1-215ENST00000597901 NCAPD2Q15021 1401 aa20.58■□□□□ 0.88
LIG1-215ENST00000597901 MPRIPQ6WCQ1 1025 aa20.57■□□□□ 0.88
LIG1-215ENST00000597901 AKT1S1Q96B36 256 aa20.57■□□□□ 0.88
LIG1-215ENST00000597901 CCNL1Q9UK58 526 aaPredicted RBP20.55■□□□□ 0.88
LIG1-215ENST00000597901 KAT6BQ8WYB5 2073 aa20.55■□□□□ 0.88
LIG1-215ENST00000597901 MAP2P11137 1827 aaKnown RBP20.55■□□□□ 0.88
LIG1-215ENST00000597901 IGSF1Q8N6C5 1336 aa20.54■□□□□ 0.88
LIG1-215ENST00000597901 PTGER2P43116 358 aa20.54■□□□□ 0.88
LIG1-215ENST00000597901 IFNL2Q8IZJ0 200 aa20.54■□□□□ 0.88
LIG1-215ENST00000597901 BTAF1O14981 1849 aa20.54■□□□□ 0.88
LIG1-215ENST00000597901 PHKG2P15735 406 aa20.53■□□□□ 0.88
LIG1-215ENST00000597901 PIGBQ92521 554 aa20.53■□□□□ 0.88
LIG1-215ENST00000597901 MTFR1LQ9H019 292 aa20.53■□□□□ 0.88
LIG1-215ENST00000597901 SHANK3Q9BYB0 1731 aa20.51■□□□□ 0.87
LIG1-215ENST00000597901 IL13P35225 146 aa20.51■□□□□ 0.87
LIG1-215ENST00000597901 MTHFSP49914 203 aa20.51■□□□□ 0.87
LIG1-215ENST00000597901 PLEKHO1Q53GL0 409 aaPredicted RBP20.51■□□□□ 0.87
LIG1-215ENST00000597901 CC2D1BQ5T0F9 858 aaKnown RBP20.51■□□□□ 0.87
LIG1-215ENST00000597901 TFCP2L1Q9NZI6 479 aa20.51■□□□□ 0.87
LIG1-215ENST00000597901 ANKRD26Q9UPS8 1709 aa20.5■□□□□ 0.87
LIG1-215ENST00000597901 SMARCC1Q92922 1105 aaPredicted RBP20.5■□□□□ 0.87
LIG1-215ENST00000597901 SULT6B1Q6IMI4 303 aa20.48■□□□□ 0.87
LIG1-215ENST00000597901 AEBP1Q8IUX7 1158 aa20.48■□□□□ 0.87
LIG1-215ENST00000597901 SLC16A10Q8TF71 515 aa20.48■□□□□ 0.87
LIG1-215ENST00000597901 SGIP1Q9BQI5 828 aa20.48■□□□□ 0.87
LIG1-215ENST00000597901 HMGB2P26583 209 aaKnown RBP20.47■□□□□ 0.87
LIG1-215ENST00000597901 AMOTQ4VCS5 1084 aa20.47■□□□□ 0.87
LIG1-215ENST00000597901 TMOD3Q9NYL9 352 aa20.47■□□□□ 0.87
LIG1-215ENST00000597901 PNPLA7Q6ZV29 1317 aa20.47■□□□□ 0.87
LIG1-215ENST00000597901 PALLDQ8WX93 1383 aa20.46■□□□□ 0.87
LIG1-215ENST00000597901 CNGB1Q14028 1251 aaPredicted RBP20.46■□□□□ 0.87
LIG1-215ENST00000597901 DOT1LQ8TEK3 1739 aa20.46■□□□□ 0.87
LIG1-215ENST00000597901 CASZ1Q86V15 1759 aa20.46■□□□□ 0.87
LIG1-215ENST00000597901 PAPPAQ13219 1627 aa20.45■□□□□ 0.87
LIG1-215ENST00000597901 PLEKHG2Q9H7P9 1386 aa20.45■□□□□ 0.86
LIG1-215ENST00000597901 ERVV-2B6SEH9 535 aa20.44■□□□□ 0.86
LIG1-215ENST00000597901 HSP90AB1P08238 724 aaKnown RBP20.44■□□□□ 0.86
LIG1-215ENST00000597901 DCAF5Q96JK2 942 aa20.44■□□□□ 0.86
LIG1-215ENST00000597901 ASAP1Q9ULH1 1129 aa20.44■□□□□ 0.86
LIG1-215ENST00000597901 ZNF530Q6P9A1 599 aaPredicted RBP20.43■□□□□ 0.86
LIG1-215ENST00000597901 COL23A1Q86Y22 540 aaPredicted RBP20.43■□□□□ 0.86
LIG1-215ENST00000597901 ARXQ96QS3 562 aa20.43■□□□□ 0.86
LIG1-215ENST00000597901 SYT17Q9BSW7 474 aa20.42■□□□□ 0.86
LIG1-215ENST00000597901 ATG3Q9NT62 314 aa20.42■□□□□ 0.86
LIG1-215ENST00000597901 NPC1L1Q9UHC9 1359 aa20.42■□□□□ 0.86
LIG1-215ENST00000597901 PKD1L3Q7Z443 1732 aa20.41■□□□□ 0.86
LIG1-215ENST00000597901 LOC102724428A0A0B4J2F2 783 aa20.41■□□□□ 0.86
LIG1-215ENST00000597901 MSH5O43196 834 aa20.41■□□□□ 0.86
LIG1-215ENST00000597901 DIAPH1O60610 1272 aaKnown RBP20.41■□□□□ 0.86
LIG1-215ENST00000597901 SIK1P57059 783 aa20.41■□□□□ 0.86
LIG1-215ENST00000597901 FHDC1Q9C0D6 1143 aaPredicted RBP20.41■□□□□ 0.86
LIG1-215ENST00000597901 YY1P25490 414 aa20.4■□□□□ 0.86
LIG1-215ENST00000597901 C1orf141Q5JVX7 400 aa20.4■□□□□ 0.86
LIG1-215ENST00000597901 KDRP35968 1356 aa20.39■□□□□ 0.85
LIG1-215ENST00000597901 CABP4P57796 275 aa20.39■□□□□ 0.85
LIG1-215ENST00000597901 LY75O60449 1722 aa20.39■□□□□ 0.85
LIG1-215ENST00000597901 HMOX1P09601 288 aa20.38■□□□□ 0.85
LIG1-215ENST00000597901 POLD1P28340 1107 aa20.38■□□□□ 0.85
LIG1-215ENST00000597901 ATP6V1AP38606 617 aa20.38■□□□□ 0.85
LIG1-215ENST00000597901 FLAD1Q8NFF5 587 aa20.38■□□□□ 0.85
LIG1-215ENST00000597901 ITPK1Q13572 414 aa20.36■□□□□ 0.85
LIG1-215ENST00000597901 NFATC2IPQ8NCF5 419 aa20.36■□□□□ 0.85
LIG1-215ENST00000597901 LINC00116Q8NCU8 138 aa20.36■□□□□ 0.85
LIG1-215ENST00000597901 AK7Q96M32 723 aa20.36■□□□□ 0.85
LIG1-215ENST00000597901 TOGARAM1Q9Y4F4 1720 aa20.35■□□□□ 0.85
LIG1-215ENST00000597901 AKAP4Q5JQC9 854 aa20.34■□□□□ 0.85
LIG1-215ENST00000597901 SMIM5Q71RC9 77 aa20.34■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms