RNA–Protein interactions for RNA: ENST00000597209.1

CHMP2A-203, Transcript of charged multivesicular body protein 2A, humanhuman

TSL 2

Gene CHMP2A, Length 662 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2A-203ENST00000597209 ANO8Q9HCE9 1232 aaPredicted RBP24.71■■□□□ 1.55
CHMP2A-203ENST00000597209 SHANK3Q9BYB0 1731 aa24.71■■□□□ 1.55
CHMP2A-203ENST00000597209 BTAF1O14981 1849 aa24.7■■□□□ 1.55
CHMP2A-203ENST00000597209 MAP2P11137 1827 aaKnown RBP24.7■■□□□ 1.54
CHMP2A-203ENST00000597209 USHBP1Q8N6Y0 703 aa24.69■■□□□ 1.54
CHMP2A-203ENST00000597209 TATP17735 454 aaPredicted RBP24.68■■□□□ 1.54
CHMP2A-203ENST00000597209 POLKQ9UBT6 870 aa24.68■■□□□ 1.54
CHMP2A-203ENST00000597209 NCAPD2Q15021 1401 aa24.68■■□□□ 1.54
CHMP2A-203ENST00000597209 NSD2O96028 1365 aa24.67■■□□□ 1.54
CHMP2A-203ENST00000597209 PPM1GO15355 546 aaPredicted RBP24.65■■□□□ 1.54
CHMP2A-203ENST00000597209 SLC15A2Q16348 729 aa24.65■■□□□ 1.54
CHMP2A-203ENST00000597209 STK32BQ9NY57 414 aa24.65■■□□□ 1.54
CHMP2A-203ENST00000597209 SPON1Q9HCB6 807 aa24.64■■□□□ 1.54
CHMP2A-203ENST00000597209 KAT6BQ8WYB5 2073 aa24.64■■□□□ 1.53
CHMP2A-203ENST00000597209 CASZ1Q86V15 1759 aa24.64■■□□□ 1.53
CHMP2A-203ENST00000597209 DOT1LQ8TEK3 1739 aa24.64■■□□□ 1.53
CHMP2A-203ENST00000597209 PRIM1P49642 420 aaKnown RBP24.63■■□□□ 1.53
CHMP2A-203ENST00000597209 PCDH11XQ9BZA7 1347 aa24.62■■□□□ 1.53
CHMP2A-203ENST00000597209 PCDH11YQ9BZA8 1340 aa24.62■■□□□ 1.53
CHMP2A-203ENST00000597209 PAPPAQ13219 1627 aa24.61■■□□□ 1.53
CHMP2A-203ENST00000597209 SLC27A3Q5K4L6 730 aa24.61■■□□□ 1.53
CHMP2A-203ENST00000597209 EYA1Q99502 592 aa24.6■■□□□ 1.53
CHMP2A-203ENST00000597209 PKD1L3Q7Z443 1732 aa24.59■■□□□ 1.53
CHMP2A-203ENST00000597209 SYTL4Q96C24 671 aaPredicted RBP24.59■■□□□ 1.53
CHMP2A-203ENST00000597209 KIF7Q2M1P5 1343 aa24.59■■□□□ 1.53
CHMP2A-203ENST00000597209 TNNT2P45379 298 aaPredicted RBP24.58■■□□□ 1.53
CHMP2A-203ENST00000597209 LRRC4BQ9NT99 713 aa24.58■■□□□ 1.53
CHMP2A-203ENST00000597209 KNSTRNQ9Y448 316 aa24.58■■□□□ 1.53
CHMP2A-203ENST00000597209 PLEKHG2Q9H7P9 1386 aa24.56■■□□□ 1.52
CHMP2A-203ENST00000597209 CYP27B1O15528 508 aa24.56■■□□□ 1.52
CHMP2A-203ENST00000597209 EIF4A2Q14240 407 aaKnown RBP24.56■■□□□ 1.52
CHMP2A-203ENST00000597209 MORC1Q86VD1 984 aa24.56■■□□□ 1.52
CHMP2A-203ENST00000597209 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP24.56■■□□□ 1.52
CHMP2A-203ENST00000597209 LY75O60449 1722 aa24.55■■□□□ 1.52
CHMP2A-203ENST00000597209 PDGFDQ9GZP0 370 aaPredicted RBP24.55■■□□□ 1.52
CHMP2A-203ENST00000597209 SPG7Q9UQ90 795 aa24.55■■□□□ 1.52
CHMP2A-203ENST00000597209 NKX1-1Q15270 411 aaPredicted RBP24.53■■□□□ 1.52
CHMP2A-203ENST00000597209 AMER1Q5JTC6 1135 aaPredicted RBP24.52■■□□□ 1.52
CHMP2A-203ENST00000597209 AKT1S1Q96B36 256 aa24.52■■□□□ 1.52
CHMP2A-203ENST00000597209 PPP1R1BQ9UD71 204 aaPredicted RBP24.52■■□□□ 1.52
CHMP2A-203ENST00000597209 ZNF827Q17R98 1081 aa24.51■■□□□ 1.51
CHMP2A-203ENST00000597209 IGSF1Q8N6C5 1336 aa24.51■■□□□ 1.51
CHMP2A-203ENST00000597209 ZBTB7AO95365 584 aa24.5■■□□□ 1.51
CHMP2A-203ENST00000597209 MTFR1LQ9H019 292 aa24.5■■□□□ 1.51
CHMP2A-203ENST00000597209 QSER1Q2KHR3 1735 aa24.49■■□□□ 1.51
CHMP2A-203ENST00000597209 PER1O15534 1290 aaPredicted RBP24.48■■□□□ 1.51
CHMP2A-203ENST00000597209 PTGER2P43116 358 aa24.48■■□□□ 1.51
CHMP2A-203ENST00000597209 TOGARAM1Q9Y4F4 1720 aa24.47■■□□□ 1.51
CHMP2A-203ENST00000597209 HMGB2P26583 209 aaKnown RBP24.47■■□□□ 1.51
CHMP2A-203ENST00000597209 CCNL1Q9UK58 526 aaPredicted RBP24.47■■□□□ 1.51
CHMP2A-203ENST00000597209 IFNL2Q8IZJ0 200 aa24.46■■□□□ 1.51
CHMP2A-203ENST00000597209 ATF5Q9Y2D1 282 aaPredicted RBP24.46■■□□□ 1.51
CHMP2A-203ENST00000597209 ITGB4P16144 1822 aa24.45■■□□□ 1.5
CHMP2A-203ENST00000597209 MPRIPQ6WCQ1 1025 aa24.45■■□□□ 1.5
CHMP2A-203ENST00000597209 SLC16A10Q8TF71 515 aa24.45■■□□□ 1.5
CHMP2A-203ENST00000597209 SGIP1Q9BQI5 828 aa24.45■■□□□ 1.5
CHMP2A-203ENST00000597209 PHKG2P15735 406 aa24.44■■□□□ 1.5
CHMP2A-203ENST00000597209 KCNQ4P56696 695 aa24.44■■□□□ 1.5
CHMP2A-203ENST00000597209 SMARCC1Q92922 1105 aaPredicted RBP24.43■■□□□ 1.5
CHMP2A-203ENST00000597209 PALLDQ8WX93 1383 aa24.42■■□□□ 1.5
CHMP2A-203ENST00000597209 PNPLA7Q6ZV29 1317 aa24.41■■□□□ 1.5
CHMP2A-203ENST00000597209 PIGBQ92521 554 aa24.41■■□□□ 1.5
CHMP2A-203ENST00000597209 TFCP2L1Q9NZI6 479 aa24.41■■□□□ 1.5
CHMP2A-203ENST00000597209 NPC1L1Q9UHC9 1359 aa24.41■■□□□ 1.5
CHMP2A-203ENST00000597209 PLEKHO1Q53GL0 409 aaPredicted RBP24.4■■□□□ 1.5
CHMP2A-203ENST00000597209 IL13P35225 146 aa24.39■■□□□ 1.49
CHMP2A-203ENST00000597209 AMOTQ4VCS5 1084 aa24.39■■□□□ 1.49
CHMP2A-203ENST00000597209 TUBGCP6Q96RT7 1819 aa24.39■■□□□ 1.49
CHMP2A-203ENST00000597209 C5P01031 1676 aa24.37■■□□□ 1.49
CHMP2A-203ENST00000597209 HSP90AB1P08238 724 aaKnown RBP24.37■■□□□ 1.49
CHMP2A-203ENST00000597209 TMOD3Q9NYL9 352 aa24.37■■□□□ 1.49
CHMP2A-203ENST00000597209 COL24A1Q17RW2 1714 aa24.37■■□□□ 1.49
CHMP2A-203ENST00000597209 KDRP35968 1356 aa24.37■■□□□ 1.49
CHMP2A-203ENST00000597209 TAF1LQ8IZX4 1826 aa24.36■■□□□ 1.49
CHMP2A-203ENST00000597209 MTHFSP49914 203 aa24.36■■□□□ 1.49
CHMP2A-203ENST00000597209 ARXQ96QS3 562 aa24.35■■□□□ 1.49
CHMP2A-203ENST00000597209 ERVV-2B6SEH9 535 aa24.34■■□□□ 1.49
CHMP2A-203ENST00000597209 SULT6B1Q6IMI4 303 aa24.34■■□□□ 1.49
CHMP2A-203ENST00000597209 AEBP1Q8IUX7 1158 aa24.34■■□□□ 1.49
CHMP2A-203ENST00000597209 DCAF5Q96JK2 942 aa24.34■■□□□ 1.49
CHMP2A-203ENST00000597209 CC2D1BQ5T0F9 858 aaKnown RBP24.33■■□□□ 1.49
CHMP2A-203ENST00000597209 MAP3K5Q99683 1374 aa24.32■■□□□ 1.48
CHMP2A-203ENST00000597209 DCAF8L1A6NGE4 600 aa24.32■■□□□ 1.48
CHMP2A-203ENST00000597209 ZNF530Q6P9A1 599 aaPredicted RBP24.32■■□□□ 1.48
CHMP2A-203ENST00000597209 FLAD1Q8NFF5 587 aa24.32■■□□□ 1.48
CHMP2A-203ENST00000597209 SYT17Q9BSW7 474 aa24.32■■□□□ 1.48
CHMP2A-203ENST00000597209 FHDC1Q9C0D6 1143 aaPredicted RBP24.32■■□□□ 1.48
CHMP2A-203ENST00000597209 COL23A1Q86Y22 540 aaPredicted RBP24.31■■□□□ 1.48
CHMP2A-203ENST00000597209 C4BP0C0L5 1744 aa24.3■■□□□ 1.48
CHMP2A-203ENST00000597209 LOC102724428A0A0B4J2F2 783 aa24.3■■□□□ 1.48
CHMP2A-203ENST00000597209 POLD1P28340 1107 aa24.3■■□□□ 1.48
CHMP2A-203ENST00000597209 SIK1P57059 783 aa24.3■■□□□ 1.48
CHMP2A-203ENST00000597209 ASAP1Q9ULH1 1129 aa24.3■■□□□ 1.48
CHMP2A-203ENST00000597209 ATG3Q9NT62 314 aa24.29■■□□□ 1.48
CHMP2A-203ENST00000597209 C1orf141Q5JVX7 400 aa24.28■■□□□ 1.48
CHMP2A-203ENST00000597209 KDM6AO15550 1401 aaPredicted RBP24.27■■□□□ 1.48
CHMP2A-203ENST00000597209 DIAPH1O60610 1272 aaKnown RBP24.27■■□□□ 1.48
CHMP2A-203ENST00000597209 AK7Q96M32 723 aa24.26■■□□□ 1.47
CHMP2A-203ENST00000597209 ZNF831Q5JPB2 1677 aa24.25■■□□□ 1.47
CHMP2A-203ENST00000597209 MSH5O43196 834 aa24.25■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms