RNA–Protein interactions for RNA: ENST00000588857.5

ATG4D-209, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4D, Length 1,555 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-209ENST00000588857 GJD4Q96KN9 370 aaPredicted RBP29.12■■■□□ 2.25
ATG4D-209ENST00000588857 NCAPD2Q15021 1401 aa29.12■■■□□ 2.25
ATG4D-209ENST00000588857 SLFN5Q08AF3 891 aa29.11■■■□□ 2.25
ATG4D-209ENST00000588857 COL14A1Q05707 1796 aaKnown RBP29.11■■■□□ 2.25
ATG4D-209ENST00000588857 GAS2L2Q8NHY3 880 aa29.09■■■□□ 2.25
ATG4D-209ENST00000588857 COL5A2P05997 1499 aaPredicted RBP29.07■■■□□ 2.24
ATG4D-209ENST00000588857 VPS72Q15906 364 aa29.07■■■□□ 2.24
ATG4D-209ENST00000588857 MTHFSDQ2M296 383 aaKnown RBP29.07■■■□□ 2.24
ATG4D-209ENST00000588857 BTG4Q9NY30 223 aa29.07■■■□□ 2.24
ATG4D-209ENST00000588857 RGS12O14924 1447 aa29.07■■■□□ 2.24
ATG4D-209ENST00000588857 WDR17Q8IZU2 1322 aa29.06■■■□□ 2.24
ATG4D-209ENST00000588857 EVA1CP58658 441 aa29.05■■■□□ 2.24
ATG4D-209ENST00000588857 DUSP27Q5VZP5 1158 aa29.05■■■□□ 2.24
ATG4D-209ENST00000588857 TRMT2AQ8IZ69 625 aaKnown RBP29.05■■■□□ 2.24
ATG4D-209ENST00000588857 SPINK5Q9NQ38 1064 aaPredicted RBP29.05■■■□□ 2.24
ATG4D-209ENST00000588857 CALD1Q05682 793 aaKnown RBP29.05■■■□□ 2.24
ATG4D-209ENST00000588857 IL16Q14005 1332 aa29.04■■■□□ 2.24
ATG4D-209ENST00000588857 MYH16Q9H6N6 1097 aa29.03■■■□□ 2.24
ATG4D-209ENST00000588857 TOM1L2Q6ZVM7 507 aa29.02■■■□□ 2.24
ATG4D-209ENST00000588857 STRN4Q9NRL3 753 aa29.02■■■□□ 2.24
ATG4D-209ENST00000588857 PLEKHO1Q53GL0 409 aaPredicted RBP29.01■■■□□ 2.24
ATG4D-209ENST00000588857 RAPGEF4Q8WZA2 1011 aa29.01■■■□□ 2.24
ATG4D-209ENST00000588857 TNKS1BP1Q9C0C2 1729 aaKnown RBP29.01■■■□□ 2.23
ATG4D-209ENST00000588857 AMOTQ4VCS5 1084 aa29.01■■■□□ 2.23
ATG4D-209ENST00000588857 RTF1Q92541 710 aaKnown RBP29■■■□□ 2.23
ATG4D-209ENST00000588857 CCDC9Q9Y3X0 531 aaKnown RBP29■■■□□ 2.23
ATG4D-209ENST00000588857 PLCH1Q4KWH8 1693 aa28.99■■■□□ 2.23
ATG4D-209ENST00000588857 NWD2Q9ULI1 1742 aa28.98■■■□□ 2.23
ATG4D-209ENST00000588857 SUPT16HQ9Y5B9 1047 aaKnown RBP28.98■■■□□ 2.23
ATG4D-209ENST00000588857 GNAT3A8MTJ3 354 aa28.97■■■□□ 2.23
ATG4D-209ENST00000588857 HTATSF1O43719 755 aaKnown RBP28.97■■■□□ 2.23
ATG4D-209ENST00000588857 TATP17735 454 aaPredicted RBP28.97■■■□□ 2.23
ATG4D-209ENST00000588857 THUMPD2Q9BTF0 503 aaKnown RBP28.97■■■□□ 2.23
ATG4D-209ENST00000588857 MAP3K5Q99683 1374 aa28.96■■■□□ 2.23
ATG4D-209ENST00000588857 DCTN1Q14203 1278 aa28.96■■■□□ 2.23
ATG4D-209ENST00000588857 LARP1Q6PKG0 1096 aaKnown RBP28.96■■■□□ 2.23
ATG4D-209ENST00000588857 CARD10Q9BWT7 1032 aa28.96■■■□□ 2.23
ATG4D-209ENST00000588857 MCM10Q7L590 875 aa28.95■■■□□ 2.22
ATG4D-209ENST00000588857 PLEKHG2Q9H7P9 1386 aa28.95■■■□□ 2.22
ATG4D-209ENST00000588857 RCAN3Q9UKA8 241 aa28.94■■■□□ 2.22
ATG4D-209ENST00000588857 CRB1P82279 1406 aa28.94■■■□□ 2.22
ATG4D-209ENST00000588857 GLI3P10071 1580 aa28.93■■■□□ 2.22
ATG4D-209ENST00000588857 ONECUT3O60422 494 aaPredicted RBP28.93■■■□□ 2.22
ATG4D-209ENST00000588857 ZNF530Q6P9A1 599 aaPredicted RBP28.93■■■□□ 2.22
ATG4D-209ENST00000588857 UPF1Q92900 1129 aaKnown RBP eCLIP28.93■■■□□ 2.22
ATG4D-209ENST00000588857 PARP4Q9UKK3 1724 aaKnown RBP28.93■■■□□ 2.22
ATG4D-209ENST00000588857 GNAI1P63096 354 aa28.92■■■□□ 2.22
ATG4D-209ENST00000588857 IFT57Q9NWB7 429 aa28.92■■■□□ 2.22
ATG4D-209ENST00000588857 LAS1LQ9Y4W2 734 aaKnown RBP28.92■■■□□ 2.22
ATG4D-209ENST00000588857 MEGF6O75095 1541 aa28.92■■■□□ 2.22
ATG4D-209ENST00000588857 FANCIQ9NVI1 1328 aa28.92■■■□□ 2.22
ATG4D-209ENST00000588857 C1orf141Q5JVX7 400 aa28.91■■■□□ 2.22
ATG4D-209ENST00000588857 SPG7Q9UQ90 795 aa28.91■■■□□ 2.22
ATG4D-209ENST00000588857 AKAP4Q5JQC9 854 aa28.9■■■□□ 2.22
ATG4D-209ENST00000588857 SPATA31A5Q5VU36 1347 aa28.9■■■□□ 2.22
ATG4D-209ENST00000588857 SPATA31A7Q8IWB4 1347 aa28.9■■■□□ 2.22
ATG4D-209ENST00000588857 TSR2Q969E8 191 aaKnown RBP28.9■■■□□ 2.22
ATG4D-209ENST00000588857 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP28.9■■■□□ 2.22
ATG4D-209ENST00000588857 SEPT12Q8IYM1 358 aa28.89■■■□□ 2.22
ATG4D-209ENST00000588857 PKD1L3Q7Z443 1732 aa28.89■■■□□ 2.22
ATG4D-209ENST00000588857 CFAP44Q96MT7 982 aa28.88■■■□□ 2.21
ATG4D-209ENST00000588857 VIRMAQ69YN4 1812 aaKnown RBP28.88■■■□□ 2.21
ATG4D-209ENST00000588857 NRAPQ86VF7 1730 aa28.88■■■□□ 2.21
ATG4D-209ENST00000588857 NEFLP07196 543 aa28.88■■■□□ 2.21
ATG4D-209ENST00000588857 GTF3C3Q9Y5Q9 886 aa28.88■■■□□ 2.21
ATG4D-209ENST00000588857 ZNF853P0CG23 659 aa28.87■■■□□ 2.21
ATG4D-209ENST00000588857 LRRC37A3O60309 1634 aa28.86■■■□□ 2.21
ATG4D-209ENST00000588857 FAM98CQ17RN3 349 aaKnown RBP28.86■■■□□ 2.21
ATG4D-209ENST00000588857 OVOS2A0A0G2JMS6 1433 aa28.86■■■□□ 2.21
ATG4D-209ENST00000588857 IL2RBP14784 551 aa28.85■■■□□ 2.21
ATG4D-209ENST00000588857 USP35Q9P2H5 1018 aa28.85■■■□□ 2.21
ATG4D-209ENST00000588857 SPATA31A1Q5TZJ5 1347 aa28.84■■■□□ 2.21
ATG4D-209ENST00000588857 IL17REQ8NFR9 667 aa28.84■■■□□ 2.21
ATG4D-209ENST00000588857 MBIPQ9NS73 344 aa28.83■■■□□ 2.21
ATG4D-209ENST00000588857 EXOSC9Q06265 439 aaKnown RBP28.82■■■□□ 2.2
ATG4D-209ENST00000588857 CHL1O00533 1208 aa28.8■■■□□ 2.2
ATG4D-209ENST00000588857 IFNL2Q8IZJ0 200 aa28.8■■■□□ 2.2
ATG4D-209ENST00000588857 CEMIPQ8WUJ3 1361 aa28.79■■■□□ 2.2
ATG4D-209ENST00000588857 A0A0G2JS52 829 aa28.79■■■□□ 2.2
ATG4D-209ENST00000588857 CT47B1P0C2W7 299 aaPredicted RBP28.79■■■□□ 2.2
ATG4D-209ENST00000588857 MYT1Q01538 1121 aa28.79■■■□□ 2.2
ATG4D-209ENST00000588857 MPRIPQ6WCQ1 1025 aa28.79■■■□□ 2.2
ATG4D-209ENST00000588857 ZCRB1Q8TBF4 217 aaKnown RBP28.79■■■□□ 2.2
ATG4D-209ENST00000588857 RNF123Q5XPI4 1314 aa28.78■■■□□ 2.2
ATG4D-209ENST00000588857 PHKG2P15735 406 aa28.78■■■□□ 2.2
ATG4D-209ENST00000588857 LGR6Q9HBX8 967 aa28.78■■■□□ 2.2
ATG4D-209ENST00000588857 WNK3Q9BYP7 1800 aa28.78■■■□□ 2.2
ATG4D-209ENST00000588857 SCN11AQ9UI33 1791 aa28.77■■■□□ 2.2
ATG4D-209ENST00000588857 RNMTO43148 476 aaKnown RBP28.77■■■□□ 2.2
ATG4D-209ENST00000588857 TAF7Q15545 349 aaPredicted RBP28.76■■■□□ 2.19
ATG4D-209ENST00000588857 KRT27Q7Z3Y8 459 aa28.76■■■□□ 2.19
ATG4D-209ENST00000588857 PCDH11XQ9BZA7 1347 aa28.76■■■□□ 2.19
ATG4D-209ENST00000588857 PCDH11YQ9BZA8 1340 aa28.76■■■□□ 2.19
ATG4D-209ENST00000588857 ADAMTS7Q9UKP4 1686 aa28.76■■■□□ 2.19
ATG4D-209ENST00000588857 TEFQ10587 303 aa28.75■■■□□ 2.19
ATG4D-209ENST00000588857 TSPYL4Q9UJ04 414 aa28.75■■■□□ 2.19
ATG4D-209ENST00000588857 HSP90AB1P08238 724 aaKnown RBP28.75■■■□□ 2.19
ATG4D-209ENST00000588857 BARGINQ6ZT62 677 aa28.75■■■□□ 2.19
ATG4D-209ENST00000588857 BABAM1Q9NWV8 329 aa28.75■■■□□ 2.19
ATG4D-209ENST00000588857 CYP27B1O15528 508 aa28.74■■■□□ 2.19
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms