RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 NCOA4Q13772 614 aa10.77□□□□□ -0.69
NUP88-213ENST00000576862 PLEKHM2Q8IWE5 1019 aa10.76□□□□□ -0.69
NUP88-213ENST00000576862 TRIM52Q96A61 297 aa10.76□□□□□ -0.69
NUP88-213ENST00000576862 MAFBQ9Y5Q3 323 aaPredicted RBP10.76□□□□□ -0.69
NUP88-213ENST00000576862 USP17L3A6NCW0 530 aa10.75□□□□□ -0.69
NUP88-213ENST00000576862 USP17L4A6NCW7 530 aa10.75□□□□□ -0.69
NUP88-213ENST00000576862 CFAP70Q5T0N1 1121 aa10.75□□□□□ -0.69
NUP88-213ENST00000576862 USP17L2Q6R6M4 530 aa10.75□□□□□ -0.69
NUP88-213ENST00000576862 USP17L1Q7RTZ2 530 aa10.75□□□□□ -0.69
NUP88-213ENST00000576862 PURBQ96QR8 312 aaKnown RBP10.75□□□□□ -0.69
NUP88-213ENST00000576862 TSEN34Q9BSV6 310 aaKnown RBP10.75□□□□□ -0.69
NUP88-213ENST00000576862 GMPR2Q9P2T1 348 aaKnown RBP10.75□□□□□ -0.69
NUP88-213ENST00000576862 POTECB2RU33 542 aa10.74□□□□□ -0.69
NUP88-213ENST00000576862 LZTS3O60299 673 aaPredicted RBP10.74□□□□□ -0.69
NUP88-213ENST00000576862 MYCP01106 439 aaPredicted RBP10.74□□□□□ -0.69
NUP88-213ENST00000576862 RELBQ01201 579 aa10.74□□□□□ -0.69
NUP88-213ENST00000576862 EML3Q32P44 896 aa10.74□□□□□ -0.69
NUP88-213ENST00000576862 ZFP42Q96MM3 310 aa10.74□□□□□ -0.69
NUP88-213ENST00000576862 ATP5J2-PTCD1G3V325 749 aa10.73□□□□□ -0.69
NUP88-213ENST00000576862 PTGIRP43119 386 aa10.73□□□□□ -0.69
NUP88-213ENST00000576862 C6orf118Q5T5N4 469 aa10.73□□□□□ -0.69
NUP88-213ENST00000576862 ZNF395Q9H8N7 513 aaPredicted RBP10.73□□□□□ -0.69
NUP88-213ENST00000576862 SUPT5HO00267 1087 aaKnown RBP10.72□□□□□ -0.69
NUP88-213ENST00000576862 SPINT1O43278 529 aa10.72□□□□□ -0.69
NUP88-213ENST00000576862 BMP2P12643 396 aa10.72□□□□□ -0.69
NUP88-213ENST00000576862 CYP2U1Q7Z449 544 aa10.72□□□□□ -0.69
NUP88-213ENST00000576862 SIRT1Q96EB6 747 aa10.72□□□□□ -0.69
NUP88-213ENST00000576862 UPP2O95045 317 aa10.71□□□□□ -0.69
NUP88-213ENST00000576862 SCARF1Q14162 830 aa10.71□□□□□ -0.69
NUP88-213ENST00000576862 ESF1Q9H501 851 aaKnown RBP10.71□□□□□ -0.69
NUP88-213ENST00000576862 PCDHGA11Q9Y5H2 935 aa10.71□□□□□ -0.69
NUP88-213ENST00000576862 STAU1O95793 577 aaKnown RBP10.7□□□□□ -0.7
NUP88-213ENST00000576862 LMOD1P29536 600 aaPredicted RBP10.7□□□□□ -0.7
NUP88-213ENST00000576862 CCDC82Q8N4S0 544 aa10.7□□□□□ -0.7
NUP88-213ENST00000576862 NOD1Q9Y239 953 aa10.7□□□□□ -0.7
NUP88-213ENST00000576862 TRIM47Q96LD4 638 aa10.69□□□□□ -0.7
NUP88-213ENST00000576862 INSM2Q96T92 566 aaPredicted RBP10.69□□□□□ -0.7
NUP88-213ENST00000576862 ARHGEF10LQ9HCE6 1279 aa10.69□□□□□ -0.7
NUP88-213ENST00000576862 MKRN1Q9UHC7 482 aaKnown RBP10.69□□□□□ -0.7
NUP88-213ENST00000576862 SERPINA10Q9UK55 444 aa10.69□□□□□ -0.7
NUP88-213ENST00000576862 A0A1W2PRU2 124 aa10.68□□□□□ -0.7
NUP88-213ENST00000576862 GNRH1P01148 92 aa10.68□□□□□ -0.7
NUP88-213ENST00000576862 GTF2IP78347 998 aa10.68□□□□□ -0.7
NUP88-213ENST00000576862 KANK4Q5T7N3 995 aaPredicted RBP10.68□□□□□ -0.7
NUP88-213ENST00000576862 SENP2Q9HC62 589 aa10.68□□□□□ -0.7
NUP88-213ENST00000576862 RAB6BQ9NRW1 208 aa10.68□□□□□ -0.7
NUP88-213ENST00000576862 SOS2Q07890 1332 aaPredicted RBP10.67□□□□□ -0.7
NUP88-213ENST00000576862 SNRPBP14678 240 aaKnown RBP10.67□□□□□ -0.7
NUP88-213ENST00000576862 CTSOP43234 321 aaPredicted RBP10.67□□□□□ -0.7
NUP88-213ENST00000576862 SCNN1DP51172 638 aa10.67□□□□□ -0.7
NUP88-213ENST00000576862 CLDN10P78369 228 aa10.67□□□□□ -0.7
NUP88-213ENST00000576862 ZBTB7BO15156 539 aaPredicted RBP10.66□□□□□ -0.7
NUP88-213ENST00000576862 IL2RAP01589 272 aa10.66□□□□□ -0.7
NUP88-213ENST00000576862 RFX1P22670 979 aa10.66□□□□□ -0.7
NUP88-213ENST00000576862 CCDC97Q96F63 343 aaPredicted RBP10.66□□□□□ -0.7
NUP88-213ENST00000576862 ETNK1Q9HBU6 452 aa10.66□□□□□ -0.7
NUP88-213ENST00000576862 KIAA1024Q9UPX6 916 aa10.66□□□□□ -0.7
NUP88-213ENST00000576862 CLN3Q13286 438 aa10.65□□□□□ -0.7
NUP88-213ENST00000576862 FOXD4L5Q5VV16 416 aaPredicted RBP10.65□□□□□ -0.7
NUP88-213ENST00000576862 KIFC2Q96AC6 838 aa10.65□□□□□ -0.7
NUP88-213ENST00000576862 HRH3Q9Y5N1 445 aa10.65□□□□□ -0.7
NUP88-213ENST00000576862 TMEM229AB2RXF0 380 aa10.64□□□□□ -0.71
NUP88-213ENST00000576862 C11orf95C9JLR9 678 aaPredicted RBP10.64□□□□□ -0.71
NUP88-213ENST00000576862 SRPK2P78362 688 aaKnown RBP10.64□□□□□ -0.71
NUP88-213ENST00000576862 TRIM50Q86XT4 487 aa10.64□□□□□ -0.71
NUP88-213ENST00000576862 OGFOD1Q8N543 542 aa10.64□□□□□ -0.71
NUP88-213ENST00000576862 TTLL8A6PVC2 850 aa10.63□□□□□ -0.71
NUP88-213ENST00000576862 MEN1O00255 615 aa10.63□□□□□ -0.71
NUP88-213ENST00000576862 DKK1O94907 266 aa10.63□□□□□ -0.71
NUP88-213ENST00000576862 GDF10P55107 478 aa10.63□□□□□ -0.71
NUP88-213ENST00000576862 ZNF787Q6DD87 383 aa10.63□□□□□ -0.71
NUP88-213ENST00000576862 XAGE2Q96GT9 111 aa10.63□□□□□ -0.71
NUP88-213ENST00000576862 POLMQ9NP87 494 aaPredicted RBP10.63□□□□□ -0.71
NUP88-213ENST00000576862 DNMT3LQ9UJW3 386 aa10.63□□□□□ -0.71
NUP88-213ENST00000576862 SOBPA7XYQ1 873 aa10.62□□□□□ -0.71
NUP88-213ENST00000576862 RNF217Q8TC41 542 aa10.62□□□□□ -0.71
NUP88-213ENST00000576862 CNKSR1Q969H4 720 aa10.62□□□□□ -0.71
NUP88-213ENST00000576862 ESYT1Q9BSJ8 1104 aa10.62□□□□□ -0.71
NUP88-213ENST00000576862 VRTNQ9H8Y1 702 aa10.62□□□□□ -0.71
NUP88-213ENST00000576862 DNAAF2Q9NVR5 837 aaKnown RBP10.62□□□□□ -0.71
NUP88-213ENST00000576862 WASLO00401 505 aaPredicted RBP10.61□□□□□ -0.71
NUP88-213ENST00000576862 INHAP05111 366 aa10.61□□□□□ -0.71
NUP88-213ENST00000576862 RASA1P20936 1047 aa10.61□□□□□ -0.71
NUP88-213ENST00000576862 RNF144AP50876 292 aaPredicted RBP10.61□□□□□ -0.71
NUP88-213ENST00000576862 ATP1A2P50993 1020 aa10.61□□□□□ -0.71
NUP88-213ENST00000576862 CRTC2Q53ET0 693 aaPredicted RBP10.61□□□□□ -0.71
NUP88-213ENST00000576862 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP10.6□□□□□ -0.71
NUP88-213ENST00000576862 FIGNL2A6NMB9 653 aa10.6□□□□□ -0.71
NUP88-213ENST00000576862 PTK7Q13308 1070 aa10.6□□□□□ -0.71
NUP88-213ENST00000576862 CDCA8Q53HL2 280 aa10.6□□□□□ -0.71
NUP88-213ENST00000576862 ESCO1Q5FWF5 840 aa10.6□□□□□ -0.71
NUP88-213ENST00000576862 LARGE2Q8N3Y3 721 aa10.6□□□□□ -0.71
NUP88-213ENST00000576862 NLRP3Q96P20 1036 aa10.6□□□□□ -0.71
NUP88-213ENST00000576862 GPC1P35052 558 aa10.59□□□□□ -0.71
NUP88-213ENST00000576862 CENPCQ03188 943 aa10.59□□□□□ -0.71
NUP88-213ENST00000576862 PSME1Q06323 249 aa10.59□□□□□ -0.71
NUP88-213ENST00000576862 CCDC102BQ68D86 513 aa10.59□□□□□ -0.71
NUP88-213ENST00000576862 SIX5Q8N196 739 aa10.59□□□□□ -0.71
NUP88-213ENST00000576862 SERBP1Q8NC51 408 aaKnown RBP eCLIP10.59□□□□□ -0.71
NUP88-213ENST00000576862 ZNF594Q96JF6 807 aaPredicted RBP10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms