RNA–Protein interactions for RNA: ENST00000568373.5

SMPD3-211, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 1 (best) BASIC

Gene SMPD3, Length 2,073 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-211ENST00000568373 ORAI2Q96SN7 254 aa23.04■■□□□ 1.28
SMPD3-211ENST00000568373 STRCQ7RTU9 1775 aa23.03■■□□□ 1.28
SMPD3-211ENST00000568373 NOP58Q9Y2X3 529 aaKnown RBP23.03■■□□□ 1.28
SMPD3-211ENST00000568373 KCNH5Q8NCM2 988 aa23.02■■□□□ 1.28
SMPD3-211ENST00000568373 PDZRN3Q9UPQ7 1066 aa23.02■■□□□ 1.28
SMPD3-211ENST00000568373 ABCC4O15439 1325 aa23.02■■□□□ 1.28
SMPD3-211ENST00000568373 IP6K1Q92551 441 aa23.02■■□□□ 1.28
SMPD3-211ENST00000568373 PHRF1Q9P1Y6 1649 aaKnown RBP23.01■■□□□ 1.27
SMPD3-211ENST00000568373 HTATSF1O43719 755 aaKnown RBP23.01■■□□□ 1.27
SMPD3-211ENST00000568373 LTV1Q96GA3 475 aaPredicted RBP23.01■■□□□ 1.27
SMPD3-211ENST00000568373 VIRMAQ69YN4 1812 aaKnown RBP23■■□□□ 1.27
SMPD3-211ENST00000568373 CHMP4BQ9H444 224 aaKnown RBP23■■□□□ 1.27
SMPD3-211ENST00000568373 API5Q9BZZ5 524 aaKnown RBP22.99■■□□□ 1.27
SMPD3-211ENST00000568373 KRT24Q2M2I5 525 aa22.99■■□□□ 1.27
SMPD3-211ENST00000568373 C19orf44Q9H6X5 657 aa22.99■■□□□ 1.27
SMPD3-211ENST00000568373 LRRC37A3O60309 1634 aa22.98■■□□□ 1.27
SMPD3-211ENST00000568373 KIF1AQ12756 1690 aa22.98■■□□□ 1.27
SMPD3-211ENST00000568373 C1orf167Q5SNV9 1468 aa22.98■■□□□ 1.27
SMPD3-211ENST00000568373 ZBTB7BO15156 539 aaPredicted RBP22.97■■□□□ 1.27
SMPD3-211ENST00000568373 SLIT3O75094 1523 aa22.96■■□□□ 1.27
SMPD3-211ENST00000568373 TRPM3Q9HCF6 1732 aaPredicted RBP22.96■■□□□ 1.27
SMPD3-211ENST00000568373 GNAT3A8MTJ3 354 aa22.96■■□□□ 1.27
SMPD3-211ENST00000568373 AEBP2Q6ZN18 517 aaPredicted RBP22.96■■□□□ 1.27
SMPD3-211ENST00000568373 ZBTB47Q9UFB7 747 aaPredicted RBP22.96■■□□□ 1.27
SMPD3-211ENST00000568373 XPCQ01831 940 aaPredicted RBP22.96■■□□□ 1.27
SMPD3-211ENST00000568373 TSPYL4Q9UJ04 414 aa22.96■■□□□ 1.27
SMPD3-211ENST00000568373 SMC5Q8IY18 1101 aa22.95■■□□□ 1.26
SMPD3-211ENST00000568373 MIS18AQ9NYP9 233 aa22.94■■□□□ 1.26
SMPD3-211ENST00000568373 MAP3K5Q99683 1374 aa22.94■■□□□ 1.26
SMPD3-211ENST00000568373 GCP02774 474 aa22.93■■□□□ 1.26
SMPD3-211ENST00000568373 MSH6P52701 1360 aa22.93■■□□□ 1.26
SMPD3-211ENST00000568373 USHBP1Q8N6Y0 703 aa22.93■■□□□ 1.26
SMPD3-211ENST00000568373 KRT28Q7Z3Y7 464 aa22.92■■□□□ 1.26
SMPD3-211ENST00000568373 STRCP1A6NGW2 1772 aa22.92■■□□□ 1.26
SMPD3-211ENST00000568373 USP19O94966 1318 aa22.91■■□□□ 1.26
SMPD3-211ENST00000568373 TMEM94Q12767 1356 aa22.91■■□□□ 1.26
SMPD3-211ENST00000568373 NBPF6Q5VWK0 638 aa22.91■■□□□ 1.26
SMPD3-211ENST00000568373 ARHGEF25Q86VW2 580 aa22.91■■□□□ 1.26
SMPD3-211ENST00000568373 NBPF4Q96M43 638 aa22.91■■□□□ 1.26
SMPD3-211ENST00000568373 PTPRCP08575 1304 aa22.9■■□□□ 1.26
SMPD3-211ENST00000568373 RGS12O14924 1447 aa22.9■■□□□ 1.26
SMPD3-211ENST00000568373 DCCP43146 1447 aa22.9■■□□□ 1.26
SMPD3-211ENST00000568373 MST1RQ04912 1400 aa22.9■■□□□ 1.26
SMPD3-211ENST00000568373 NCOA3Q9Y6Q9 1424 aa22.9■■□□□ 1.26
SMPD3-211ENST00000568373 ZBTB7CA1YPR0 619 aa22.89■■□□□ 1.26
SMPD3-211ENST00000568373 ATF3P18847 181 aa22.89■■□□□ 1.25
SMPD3-211ENST00000568373 LMOD2Q6P5Q4 547 aa22.89■■□□□ 1.25
SMPD3-211ENST00000568373 IL17REQ8NFR9 667 aa22.89■■□□□ 1.25
SMPD3-211ENST00000568373 DDRGK1Q96HY6 314 aa22.89■■□□□ 1.25
SMPD3-211ENST00000568373 INTS3Q68E01 1043 aaKnown RBP22.88■■□□□ 1.25
SMPD3-211ENST00000568373 ZNF335Q9H4Z2 1342 aaPredicted RBP22.88■■□□□ 1.25
SMPD3-211ENST00000568373 RGPD2P0DJD1 1756 aa22.88■■□□□ 1.25
SMPD3-211ENST00000568373 BABAM1Q9NWV8 329 aa22.87■■□□□ 1.25
SMPD3-211ENST00000568373 C1orf115Q9H7X2 142 aa22.86■■□□□ 1.25
SMPD3-211ENST00000568373 ALS2Q96Q42 1657 aa22.86■■□□□ 1.25
SMPD3-211ENST00000568373 SLC4A2P04920 1241 aa22.85■■□□□ 1.25
SMPD3-211ENST00000568373 NUCB1Q02818 461 aa22.85■■□□□ 1.25
SMPD3-211ENST00000568373 NCAPD2Q15021 1401 aa22.84■■□□□ 1.25
SMPD3-211ENST00000568373 TAF7Q15545 349 aaPredicted RBP22.84■■□□□ 1.25
SMPD3-211ENST00000568373 LRRC59Q96AG4 307 aaKnown RBP22.84■■□□□ 1.25
SMPD3-211ENST00000568373 CEMIPQ8WUJ3 1361 aa22.83■■□□□ 1.25
SMPD3-211ENST00000568373 SOS1Q07889 1333 aaPredicted RBP22.83■■□□□ 1.25
SMPD3-211ENST00000568373 PLEKHG5O94827 1062 aa22.83■■□□□ 1.24
SMPD3-211ENST00000568373 GCC1Q96CN9 775 aa22.83■■□□□ 1.24
SMPD3-211ENST00000568373 SIRT2Q8IXJ6 389 aa22.82■■□□□ 1.24
SMPD3-211ENST00000568373 ANKRD24Q8TF21 1146 aa22.81■■□□□ 1.24
SMPD3-211ENST00000568373 SEC24BO95487 1268 aa22.8■■□□□ 1.24
SMPD3-211ENST00000568373 CADPS2Q86UW7 1296 aa22.8■■□□□ 1.24
SMPD3-211ENST00000568373 CHD1LQ86WJ1 897 aa22.8■■□□□ 1.24
SMPD3-211ENST00000568373 MED1Q15648 1581 aaPredicted RBP22.8■■□□□ 1.24
SMPD3-211ENST00000568373 CAMTA1Q9Y6Y1 1673 aa22.8■■□□□ 1.24
SMPD3-211ENST00000568373 LMO7Q8WWI1 1683 aa22.8■■□□□ 1.24
SMPD3-211ENST00000568373 FAM208AQ9UK61 1670 aaKnown RBP22.8■■□□□ 1.24
SMPD3-211ENST00000568373 STK31Q9BXU1 1019 aa22.79■■□□□ 1.24
SMPD3-211ENST00000568373 PLEKHO1Q53GL0 409 aaPredicted RBP22.78■■□□□ 1.24
SMPD3-211ENST00000568373 CCDC30Q5VVM6 783 aa22.78■■□□□ 1.24
SMPD3-211ENST00000568373 G2E3Q7L622 706 aa22.78■■□□□ 1.24
SMPD3-211ENST00000568373 CACNA1FO60840 1977 aa22.78■■□□□ 1.24
SMPD3-211ENST00000568373 AMOTQ4VCS5 1084 aa22.78■■□□□ 1.24
SMPD3-211ENST00000568373 LNPKQ9C0E8 428 aa22.78■■□□□ 1.24
SMPD3-211ENST00000568373 AXIN2Q9Y2T1 843 aa22.78■■□□□ 1.24
SMPD3-211ENST00000568373 AKAP4Q5JQC9 854 aa22.77■■□□□ 1.24
SMPD3-211ENST00000568373 ZNF530Q6P9A1 599 aaPredicted RBP22.76■■□□□ 1.23
SMPD3-211ENST00000568373 NPHP3Q7Z494 1330 aa22.76■■□□□ 1.23
SMPD3-211ENST00000568373 DDX17Q92841 729 aaKnown RBP22.75■■□□□ 1.23
SMPD3-211ENST00000568373 RGPD5Q99666 1765 aa22.75■■□□□ 1.23
SMPD3-211ENST00000568373 ATP10DQ9P241 1426 aa22.75■■□□□ 1.23
SMPD3-211ENST00000568373 ANKRD45Q5TZF3 282 aa22.75■■□□□ 1.23
SMPD3-211ENST00000568373 LGR6Q9HBX8 967 aa22.75■■□□□ 1.23
SMPD3-211ENST00000568373 CCT4P50991 539 aaKnown RBP22.73■■□□□ 1.23
SMPD3-211ENST00000568373 ZC3H6P61129 1189 aaKnown RBP22.73■■□□□ 1.23
SMPD3-211ENST00000568373 ERBB3P21860 1342 aa22.73■■□□□ 1.23
SMPD3-211ENST00000568373 KDM3BQ7LBC6 1761 aa22.73■■□□□ 1.23
SMPD3-211ENST00000568373 ANKRD44Q8N8A2 993 aa22.73■■□□□ 1.23
SMPD3-211ENST00000568373 UPF2Q9HAU5 1272 aaKnown RBP22.73■■□□□ 1.23
SMPD3-211ENST00000568373 XIRP1Q702N8 1843 aaKnown RBP22.73■■□□□ 1.23
SMPD3-211ENST00000568373 FLIIQ13045 1269 aa22.72■■□□□ 1.23
SMPD3-211ENST00000568373 RPAP2Q8IXW5 612 aaPredicted RBP22.72■■□□□ 1.23
SMPD3-211ENST00000568373 MEIS3Q99687 375 aa22.72■■□□□ 1.23
SMPD3-211ENST00000568373 PXDNQ92626 1479 aa22.72■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms