RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 GAS2L2Q8NHY3 880 aa25.64■■□□□ 1.69
CLN3-230ENST00000568076 MIS18AQ9NYP9 233 aa25.64■■□□□ 1.69
CLN3-230ENST00000568076 NBR1Q14596 966 aa25.63■■□□□ 1.69
CLN3-230ENST00000568076 RTF1Q92541 710 aaKnown RBP25.63■■□□□ 1.69
CLN3-230ENST00000568076 C1orf115Q9H7X2 142 aa25.63■■□□□ 1.69
CLN3-230ENST00000568076 RGS12O14924 1447 aa25.62■■□□□ 1.69
CLN3-230ENST00000568076 CHMP4BQ9H444 224 aaKnown RBP25.62■■□□□ 1.69
CLN3-230ENST00000568076 RTL1A6NKG5 1358 aa25.61■■□□□ 1.69
CLN3-230ENST00000568076 NFAT5O94916 1531 aa25.61■■□□□ 1.69
CLN3-230ENST00000568076 SLC4A3P48751 1232 aa25.61■■□□□ 1.69
CLN3-230ENST00000568076 LTV1Q96GA3 475 aaPredicted RBP25.61■■□□□ 1.69
CLN3-230ENST00000568076 HAP1P54257 671 aaPredicted RBP25.6■■□□□ 1.69
CLN3-230ENST00000568076 NUCB1Q02818 461 aa25.6■■□□□ 1.69
CLN3-230ENST00000568076 LTN1O94822 1766 aa25.6■■□□□ 1.69
CLN3-230ENST00000568076 PSME1Q06323 249 aa25.6■■□□□ 1.69
CLN3-230ENST00000568076 SIRT2Q8IXJ6 389 aa25.59■■□□□ 1.69
CLN3-230ENST00000568076 LRRC37A3O60309 1634 aa25.58■■□□□ 1.69
CLN3-230ENST00000568076 TSPYL4Q9UJ04 414 aa25.58■■□□□ 1.69
CLN3-230ENST00000568076 HTATSF1O43719 755 aaKnown RBP25.57■■□□□ 1.68
CLN3-230ENST00000568076 ORAI2Q96SN7 254 aa25.57■■□□□ 1.68
CLN3-230ENST00000568076 INTS3Q68E01 1043 aaKnown RBP25.56■■□□□ 1.68
CLN3-230ENST00000568076 IP6K1Q92551 441 aa25.56■■□□□ 1.68
CLN3-230ENST00000568076 USHBP1Q8N6Y0 703 aa25.55■■□□□ 1.68
CLN3-230ENST00000568076 GNAT3A8MTJ3 354 aa25.55■■□□□ 1.68
CLN3-230ENST00000568076 CHD1LQ86WJ1 897 aa25.55■■□□□ 1.68
CLN3-230ENST00000568076 MSH6P52701 1360 aa25.54■■□□□ 1.68
CLN3-230ENST00000568076 LNPKQ9C0E8 428 aa25.54■■□□□ 1.68
CLN3-230ENST00000568076 GCC1Q96CN9 775 aa25.53■■□□□ 1.68
CLN3-230ENST00000568076 PTPRCP08575 1304 aa25.53■■□□□ 1.68
CLN3-230ENST00000568076 MAP3K5Q99683 1374 aa25.53■■□□□ 1.68
CLN3-230ENST00000568076 SLC4A2P04920 1241 aa25.52■■□□□ 1.68
CLN3-230ENST00000568076 IL17REQ8NFR9 667 aa25.52■■□□□ 1.68
CLN3-230ENST00000568076 XPCQ01831 940 aaPredicted RBP25.51■■□□□ 1.67
CLN3-230ENST00000568076 KCNH5Q8NCM2 988 aa25.51■■□□□ 1.67
CLN3-230ENST00000568076 NBPF6Q5VWK0 638 aa25.5■■□□□ 1.67
CLN3-230ENST00000568076 NBPF4Q96M43 638 aa25.5■■□□□ 1.67
CLN3-230ENST00000568076 TBC1D32Q96NH3 1257 aa25.5■■□□□ 1.67
CLN3-230ENST00000568076 PHRF1Q9P1Y6 1649 aaKnown RBP25.49■■□□□ 1.67
CLN3-230ENST00000568076 ANKRD45Q5TZF3 282 aa25.49■■□□□ 1.67
CLN3-230ENST00000568076 DAXXQ9UER7 740 aaPredicted RBP25.49■■□□□ 1.67
CLN3-230ENST00000568076 G2E3Q7L622 706 aa25.48■■□□□ 1.67
CLN3-230ENST00000568076 PROSER2Q86WR7 435 aaPredicted RBP25.48■■□□□ 1.67
CLN3-230ENST00000568076 UPF2Q9HAU5 1272 aaKnown RBP25.46■■□□□ 1.67
CLN3-230ENST00000568076 ATP10DQ9P241 1426 aa25.46■■□□□ 1.67
CLN3-230ENST00000568076 ZBTB7CA1YPR0 619 aa25.45■■□□□ 1.67
CLN3-230ENST00000568076 SLIT3O75094 1523 aa25.45■■□□□ 1.67
CLN3-230ENST00000568076 GCP02774 474 aa25.45■■□□□ 1.66
CLN3-230ENST00000568076 TRPM3Q9HCF6 1732 aaPredicted RBP25.44■■□□□ 1.66
CLN3-230ENST00000568076 C1orf167Q5SNV9 1468 aa25.44■■□□□ 1.66
CLN3-230ENST00000568076 TAF7Q15545 349 aaPredicted RBP25.44■■□□□ 1.66
CLN3-230ENST00000568076 RGPD2P0DJD1 1756 aa25.43■■□□□ 1.66
CLN3-230ENST00000568076 ARHGEF25Q86VW2 580 aa25.43■■□□□ 1.66
CLN3-230ENST00000568076 LRRC59Q96AG4 307 aaKnown RBP25.42■■□□□ 1.66
CLN3-230ENST00000568076 ANKRD44Q8N8A2 993 aa25.42■■□□□ 1.66
CLN3-230ENST00000568076 MEIS3Q99687 375 aa25.42■■□□□ 1.66
CLN3-230ENST00000568076 DNAJC5Q9H3Z4 198 aa25.42■■□□□ 1.66
CLN3-230ENST00000568076 BABAM1Q9NWV8 329 aa25.42■■□□□ 1.66
CLN3-230ENST00000568076 CEMIPQ8WUJ3 1361 aa25.41■■□□□ 1.66
CLN3-230ENST00000568076 C19orf44Q9H6X5 657 aa25.41■■□□□ 1.66
CLN3-230ENST00000568076 DCTPP1Q9H773 170 aa25.41■■□□□ 1.66
CLN3-230ENST00000568076 FAM208AQ9UK61 1670 aaKnown RBP25.41■■□□□ 1.66
CLN3-230ENST00000568076 F6X3S4 739 aa25.4■■□□□ 1.66
CLN3-230ENST00000568076 PLEKHG5O94827 1062 aa25.4■■□□□ 1.66
CLN3-230ENST00000568076 CEP85Q6P2H3 762 aa25.4■■□□□ 1.66
CLN3-230ENST00000568076 KRT28Q7Z3Y7 464 aa25.4■■□□□ 1.66
CLN3-230ENST00000568076 MFAP1P55081 439 aaKnown RBP25.39■■□□□ 1.66
CLN3-230ENST00000568076 BMP2KLQ5H9B9 411 aa25.39■■□□□ 1.66
CLN3-230ENST00000568076 LMOD2Q6P5Q4 547 aa25.39■■□□□ 1.66
CLN3-230ENST00000568076 RTL5Q5HYW3 569 aaPredicted RBP25.38■■□□□ 1.65
CLN3-230ENST00000568076 STK31Q9BXU1 1019 aa25.38■■□□□ 1.65
CLN3-230ENST00000568076 KIF1AQ12756 1690 aa25.38■■□□□ 1.65
CLN3-230ENST00000568076 MED1Q15648 1581 aaPredicted RBP25.38■■□□□ 1.65
CLN3-230ENST00000568076 CCDC30Q5VVM6 783 aa25.38■■□□□ 1.65
CLN3-230ENST00000568076 RPAP2Q8IXW5 612 aaPredicted RBP25.38■■□□□ 1.65
CLN3-230ENST00000568076 NECTIN2Q92692 538 aa25.37■■□□□ 1.65
CLN3-230ENST00000568076 LGR6Q9HBX8 967 aa25.37■■□□□ 1.65
CLN3-230ENST00000568076 NCAPD2Q15021 1401 aa25.37■■□□□ 1.65
CLN3-230ENST00000568076 SLC4A10Q6U841 1118 aa25.36■■□□□ 1.65
CLN3-230ENST00000568076 FLIIQ13045 1269 aa25.36■■□□□ 1.65
CLN3-230ENST00000568076 C22orf23Q9BZE7 217 aa25.36■■□□□ 1.65
CLN3-230ENST00000568076 SOS1Q07889 1333 aaPredicted RBP25.36■■□□□ 1.65
CLN3-230ENST00000568076 CCT4P50991 539 aaKnown RBP25.35■■□□□ 1.65
CLN3-230ENST00000568076 AXIN2Q9Y2T1 843 aa25.35■■□□□ 1.65
CLN3-230ENST00000568076 MST1RQ04912 1400 aa25.33■■□□□ 1.65
CLN3-230ENST00000568076 STRCP1A6NGW2 1772 aa25.33■■□□□ 1.65
CLN3-230ENST00000568076 BECN1Q14457 450 aa25.33■■□□□ 1.65
CLN3-230ENST00000568076 ANKRD24Q8TF21 1146 aa25.33■■□□□ 1.65
CLN3-230ENST00000568076 LMO7Q8WWI1 1683 aa25.33■■□□□ 1.64
CLN3-230ENST00000568076 USP35Q9P2H5 1018 aa25.33■■□□□ 1.64
CLN3-230ENST00000568076 TMEM94Q12767 1356 aa25.32■■□□□ 1.64
CLN3-230ENST00000568076 AKAP4Q5JQC9 854 aa25.31■■□□□ 1.64
CLN3-230ENST00000568076 ZNF530Q6P9A1 599 aaPredicted RBP25.31■■□□□ 1.64
CLN3-230ENST00000568076 ALS2Q96Q42 1657 aa25.31■■□□□ 1.64
CLN3-230ENST00000568076 CAMTA1Q9Y6Y1 1673 aa25.31■■□□□ 1.64
CLN3-230ENST00000568076 FKBP5Q13451 457 aaPredicted RBP25.31■■□□□ 1.64
CLN3-230ENST00000568076 PLEKHM2Q8IWE5 1019 aa25.31■■□□□ 1.64
CLN3-230ENST00000568076 PXDNQ92626 1479 aa25.3■■□□□ 1.64
CLN3-230ENST00000568076 PLEKHO1Q53GL0 409 aaPredicted RBP25.3■■□□□ 1.64
CLN3-230ENST00000568076 TBC1D2Q9BYX2 928 aa25.3■■□□□ 1.64
CLN3-230ENST00000568076 EIF4A1P60842 406 aaKnown RBP25.29■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms