RNA–Protein interactions for RNA: ENST00000561326.5

USP3-219, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-219ENST00000561326 PLEKHG2Q9H7P9 1386 aa13.37□□□□□ -0.27
USP3-219ENST00000561326 NUTM2BA6NNL0 878 aaPredicted RBP13.37□□□□□ -0.27
USP3-219ENST00000561326 NUTM2EB1AL46 878 aaPredicted RBP13.37□□□□□ -0.27
USP3-219ENST00000561326 C1orf141Q5JVX7 400 aa13.37□□□□□ -0.27
USP3-219ENST00000561326 NUTM2AQ8IVF1 878 aaPredicted RBP13.37□□□□□ -0.27
USP3-219ENST00000561326 CARD10Q9BWT7 1032 aa13.37□□□□□ -0.27
USP3-219ENST00000561326 SPINK5Q9NQ38 1064 aaPredicted RBP13.37□□□□□ -0.27
USP3-219ENST00000561326 STRN4Q9NRL3 753 aa13.37□□□□□ -0.27
USP3-219ENST00000561326 BTG4Q9NY30 223 aa13.37□□□□□ -0.27
USP3-219ENST00000561326 GTF3C3Q9Y5Q9 886 aa13.37□□□□□ -0.27
USP3-219ENST00000561326 CT47B1P0C2W7 299 aaPredicted RBP13.36□□□□□ -0.27
USP3-219ENST00000561326 CFAP44Q96MT7 982 aa13.36□□□□□ -0.27
USP3-219ENST00000561326 IFT57Q9NWB7 429 aa13.36□□□□□ -0.27
USP3-219ENST00000561326 LAS1LQ9Y4W2 734 aaKnown RBP13.36□□□□□ -0.27
USP3-219ENST00000561326 COL5A2P05997 1499 aaPredicted RBP13.36□□□□□ -0.27
USP3-219ENST00000561326 MAP3K5Q99683 1374 aa13.35□□□□□ -0.27
USP3-219ENST00000561326 ADAMTS2O95450 1211 aa13.35□□□□□ -0.27
USP3-219ENST00000561326 AKAP4Q5JQC9 854 aa13.35□□□□□ -0.27
USP3-219ENST00000561326 ZNF530Q6P9A1 599 aaPredicted RBP13.35□□□□□ -0.27
USP3-219ENST00000561326 MCM10Q7L590 875 aa13.34□□□□□ -0.27
USP3-219ENST00000561326 SPATA31A6Q5VVP1 1343 aa13.34□□□□□ -0.27
USP3-219ENST00000561326 PARP4Q9UKK3 1724 aaKnown RBP13.33□□□□□ -0.27
USP3-219ENST00000561326 ZNF853P0CG23 659 aa13.33□□□□□ -0.28
USP3-219ENST00000561326 DCTN1Q14203 1278 aa13.33□□□□□ -0.28
USP3-219ENST00000561326 LARP1Q6PKG0 1096 aaKnown RBP13.33□□□□□ -0.28
USP3-219ENST00000561326 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.33□□□□□ -0.28
USP3-219ENST00000561326 THUMPD2Q9BTF0 503 aaKnown RBP13.33□□□□□ -0.28
USP3-219ENST00000561326 NWD2Q9ULI1 1742 aa13.33□□□□□ -0.28
USP3-219ENST00000561326 CRB1P82279 1406 aa13.32□□□□□ -0.28
USP3-219ENST00000561326 KAT6BQ8WYB5 2073 aa13.32□□□□□ -0.28
USP3-219ENST00000561326 PLCH1Q4KWH8 1693 aa13.32□□□□□ -0.28
USP3-219ENST00000561326 IL2RBP14784 551 aa13.32□□□□□ -0.28
USP3-219ENST00000561326 BABAM1Q9NWV8 329 aa13.32□□□□□ -0.28
USP3-219ENST00000561326 FANCIQ9NVI1 1328 aa13.32□□□□□ -0.28
USP3-219ENST00000561326 CHL1O00533 1208 aa13.31□□□□□ -0.28
USP3-219ENST00000561326 HSP90AB1P08238 724 aaKnown RBP13.31□□□□□ -0.28
USP3-219ENST00000561326 TAF7Q15545 349 aaPredicted RBP13.31□□□□□ -0.28
USP3-219ENST00000561326 IFNL2Q8IZJ0 200 aa13.31□□□□□ -0.28
USP3-219ENST00000561326 TSR2Q969E8 191 aaKnown RBP13.31□□□□□ -0.28
USP3-219ENST00000561326 ZNF428Q96B54 188 aa13.31□□□□□ -0.28
USP3-219ENST00000561326 HSPA1LP34931 641 aa13.3□□□□□ -0.28
USP3-219ENST00000561326 EXOSC9Q06265 439 aaKnown RBP13.3□□□□□ -0.28
USP3-219ENST00000561326 TEFQ10587 303 aa13.3□□□□□ -0.28
USP3-219ENST00000561326 IL17REQ8NFR9 667 aa13.3□□□□□ -0.28
USP3-219ENST00000561326 NGLY1Q96IV0 654 aa13.3□□□□□ -0.28
USP3-219ENST00000561326 MBIPQ9NS73 344 aa13.3□□□□□ -0.28
USP3-219ENST00000561326 CACNA1FO60840 1977 aa13.3□□□□□ -0.28
USP3-219ENST00000561326 RNF123Q5XPI4 1314 aa13.3□□□□□ -0.28
USP3-219ENST00000561326 PKD1L3Q7Z443 1732 aa13.3□□□□□ -0.28
USP3-219ENST00000561326 SCN11AQ9UI33 1791 aa13.3□□□□□ -0.28
USP3-219ENST00000561326 FKBP8Q14318 412 aa13.29□□□□□ -0.28
USP3-219ENST00000561326 ERICH6BQ5W0A0 696 aa13.29□□□□□ -0.28
USP3-219ENST00000561326 ZCRB1Q8TBF4 217 aaKnown RBP13.29□□□□□ -0.28
USP3-219ENST00000561326 CDCA7Q9BWT1 371 aaPredicted RBP13.29□□□□□ -0.28
USP3-219ENST00000561326 RNMTO43148 476 aaKnown RBP13.28□□□□□ -0.28
USP3-219ENST00000561326 USP35Q9P2H5 1018 aa13.28□□□□□ -0.28
USP3-219ENST00000561326 TSPYL4Q9UJ04 414 aa13.28□□□□□ -0.28
USP3-219ENST00000561326 THRAP3Q9Y2W1 955 aaKnown RBP13.28□□□□□ -0.28
USP3-219ENST00000561326 OVOS2A0A0G2JMS6 1433 aa13.28□□□□□ -0.28
USP3-219ENST00000561326 MEGF6O75095 1541 aa13.28□□□□□ -0.28
USP3-219ENST00000561326 PHKG2P15735 406 aa13.27□□□□□ -0.29
USP3-219ENST00000561326 RRP1P56182 461 aaKnown RBP13.27□□□□□ -0.29
USP3-219ENST00000561326 MEX3CQ5U5Q3 659 aaKnown RBP13.27□□□□□ -0.29
USP3-219ENST00000561326 MPRIPQ6WCQ1 1025 aa13.27□□□□□ -0.29
USP3-219ENST00000561326 DCAF5Q96JK2 942 aa13.27□□□□□ -0.29
USP3-219ENST00000561326 CHMP4AQ9BY43 222 aa13.27□□□□□ -0.29
USP3-219ENST00000561326 LGR6Q9HBX8 967 aa13.27□□□□□ -0.29
USP3-219ENST00000561326 PCDH11XQ9BZA7 1347 aa13.27□□□□□ -0.29
USP3-219ENST00000561326 PCDH11YQ9BZA8 1340 aa13.27□□□□□ -0.29
USP3-219ENST00000561326 RARSP54136 660 aaKnown RBP13.26□□□□□ -0.29
USP3-219ENST00000561326 ALDH1L2Q3SY69 923 aa13.26□□□□□ -0.29
USP3-219ENST00000561326 NRAPQ86VF7 1730 aa13.26□□□□□ -0.29
USP3-219ENST00000561326 UNC5CLQ8IV45 518 aa13.26□□□□□ -0.29
USP3-219ENST00000561326 CEMIPQ8WUJ3 1361 aa13.26□□□□□ -0.29
USP3-219ENST00000561326 C8orf37Q96NL8 207 aa13.26□□□□□ -0.29
USP3-219ENST00000561326 CCDC9Q9Y3X0 531 aaKnown RBP13.26□□□□□ -0.29
USP3-219ENST00000561326 LRRC37A3O60309 1634 aa13.25□□□□□ -0.29
USP3-219ENST00000561326 EXOC5O00471 708 aa13.25□□□□□ -0.29
USP3-219ENST00000561326 TWISTNBQ3B726 338 aaPredicted RBP13.25□□□□□ -0.29
USP3-219ENST00000561326 SLIT2O94813 1529 aa13.24□□□□□ -0.29
USP3-219ENST00000561326 SOS1Q07889 1333 aaPredicted RBP13.24□□□□□ -0.29
USP3-219ENST00000561326 SPATA31A1Q5TZJ5 1347 aa13.24□□□□□ -0.29
USP3-219ENST00000561326 CYP27B1O15528 508 aa13.24□□□□□ -0.29
USP3-219ENST00000561326 MS4A1P11836 297 aa13.24□□□□□ -0.29
USP3-219ENST00000561326 CANXP27824 592 aaKnown RBP13.24□□□□□ -0.29
USP3-219ENST00000561326 FNBP4Q8N3X1 1017 aaPredicted RBP13.24□□□□□ -0.29
USP3-219ENST00000561326 MIS18AQ9NYP9 233 aa13.24□□□□□ -0.29
USP3-219ENST00000561326 ADAMTS7Q9UKP4 1686 aa13.24□□□□□ -0.29
USP3-219ENST00000561326 WNK3Q9BYP7 1800 aa13.23□□□□□ -0.29
USP3-219ENST00000561326 SIPA1L3O60292 1781 aaPredicted RBP13.23□□□□□ -0.29
USP3-219ENST00000561326 SPATA31A5Q5VU36 1347 aa13.23□□□□□ -0.29
USP3-219ENST00000561326 SPATA31A7Q8IWB4 1347 aa13.23□□□□□ -0.29
USP3-219ENST00000561326 BTBD11A6QL63 1104 aa13.23□□□□□ -0.29
USP3-219ENST00000561326 IPO8O15397 1037 aaKnown RBP13.23□□□□□ -0.29
USP3-219ENST00000561326 VAMP4O75379 141 aa13.23□□□□□ -0.29
USP3-219ENST00000561326 BCAR3O75815 825 aa13.23□□□□□ -0.29
USP3-219ENST00000561326 DDX54Q8TDD1 881 aaKnown RBP13.23□□□□□ -0.29
USP3-219ENST00000561326 SMC4Q9NTJ3 1288 aa13.23□□□□□ -0.29
USP3-219ENST00000561326 ERVV-2B6SEH9 535 aa13.22□□□□□ -0.29
USP3-219ENST00000561326 ELL2O00472 640 aaPredicted RBP13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms