RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 CFAP70Q5T0N1 1121 aa9.28□□□□□ -0.92
SCFD1-221ENST00000556534 DEPDC4Q8N2C3 294 aa9.28□□□□□ -0.92
SCFD1-221ENST00000556534 KDF1Q8NAX2 398 aaPredicted RBP9.28□□□□□ -0.92
SCFD1-221ENST00000556534 TFIP11Q9UBB9 837 aaKnown RBP9.28□□□□□ -0.92
SCFD1-221ENST00000556534 CCDC82Q8N4S0 544 aa9.27□□□□□ -0.93
SCFD1-221ENST00000556534 TRIM52Q96A61 297 aa9.27□□□□□ -0.93
SCFD1-221ENST00000556534 MYCP01106 439 aaPredicted RBP9.26□□□□□ -0.93
SCFD1-221ENST00000556534 EML3Q32P44 896 aa9.26□□□□□ -0.93
SCFD1-221ENST00000556534 MRPL14Q6P1L8 145 aaKnown RBP9.26□□□□□ -0.93
SCFD1-221ENST00000556534 LINC00528Q8N1L1 170 aa9.26□□□□□ -0.93
SCFD1-221ENST00000556534 AGBL1Q96MI9 1066 aa9.26□□□□□ -0.93
SCFD1-221ENST00000556534 ATP13A2Q9NQ11 1180 aa9.26□□□□□ -0.93
SCFD1-221ENST00000556534 LZTS3O60299 673 aaPredicted RBP9.25□□□□□ -0.93
SCFD1-221ENST00000556534 CYP2U1Q7Z449 544 aa9.25□□□□□ -0.93
SCFD1-221ENST00000556534 CCDC97Q96F63 343 aaPredicted RBP9.25□□□□□ -0.93
SCFD1-221ENST00000556534 USP4Q13107 963 aa9.24□□□□□ -0.93
SCFD1-221ENST00000556534 SERPINA10Q9UK55 444 aa9.24□□□□□ -0.93
SCFD1-221ENST00000556534 RELBQ01201 579 aa9.23□□□□□ -0.93
SCFD1-221ENST00000556534 SIRT1Q96EB6 747 aa9.23□□□□□ -0.93
SCFD1-221ENST00000556534 TSEN34Q9BSV6 310 aaKnown RBP9.23□□□□□ -0.93
SCFD1-221ENST00000556534 ATP5J2-PTCD1G3V325 749 aa9.22□□□□□ -0.93
SCFD1-221ENST00000556534 LMOD1P29536 600 aaPredicted RBP9.22□□□□□ -0.93
SCFD1-221ENST00000556534 PTGIRP43119 386 aa9.22□□□□□ -0.93
SCFD1-221ENST00000556534 NOD1Q9Y239 953 aa9.22□□□□□ -0.93
SCFD1-221ENST00000556534 SPINT1O43278 529 aa9.21□□□□□ -0.94
SCFD1-221ENST00000556534 GTF2IP78347 998 aa9.21□□□□□ -0.94
SCFD1-221ENST00000556534 C6orf118Q5T5N4 469 aa9.21□□□□□ -0.94
SCFD1-221ENST00000556534 PURBQ96QR8 312 aaKnown RBP9.21□□□□□ -0.94
SCFD1-221ENST00000556534 PCDHGA11Q9Y5H2 935 aa9.21□□□□□ -0.94
SCFD1-221ENST00000556534 KANK4Q5T7N3 995 aaPredicted RBP9.2□□□□□ -0.94
SCFD1-221ENST00000556534 ZFP42Q96MM3 310 aa9.2□□□□□ -0.94
SCFD1-221ENST00000556534 ESF1Q9H501 851 aaKnown RBP9.2□□□□□ -0.94
SCFD1-221ENST00000556534 ARHGEF10LQ9HCE6 1279 aa9.2□□□□□ -0.94
SCFD1-221ENST00000556534 GMPR2Q9P2T1 348 aaKnown RBP9.2□□□□□ -0.94
SCFD1-221ENST00000556534 MKRN1Q9UHC7 482 aaKnown RBP9.2□□□□□ -0.94
SCFD1-221ENST00000556534 UPP2O95045 317 aa9.19□□□□□ -0.94
SCFD1-221ENST00000556534 STAU1O95793 577 aaKnown RBP9.19□□□□□ -0.94
SCFD1-221ENST00000556534 GNRH1P01148 92 aa9.19□□□□□ -0.94
SCFD1-221ENST00000556534 BMP2P12643 396 aa9.19□□□□□ -0.94
SCFD1-221ENST00000556534 SCNN1DP51172 638 aa9.19□□□□□ -0.94
SCFD1-221ENST00000556534 CLDN10P78369 228 aa9.19□□□□□ -0.94
SCFD1-221ENST00000556534 SCARF1Q14162 830 aa9.19□□□□□ -0.94
SCFD1-221ENST00000556534 TRIM50Q86XT4 487 aa9.19□□□□□ -0.94
SCFD1-221ENST00000556534 ZNF395Q9H8N7 513 aaPredicted RBP9.19□□□□□ -0.94
SCFD1-221ENST00000556534 KIAA1024Q9UPX6 916 aa9.19□□□□□ -0.94
SCFD1-221ENST00000556534 ETNK1Q9HBU6 452 aa9.18□□□□□ -0.94
SCFD1-221ENST00000556534 RAB6BQ9NRW1 208 aa9.18□□□□□ -0.94
SCFD1-221ENST00000556534 A0A1W2PRU2 124 aa9.17□□□□□ -0.94
SCFD1-221ENST00000556534 IL2RAP01589 272 aa9.17□□□□□ -0.94
SCFD1-221ENST00000556534 RFX1P22670 979 aa9.17□□□□□ -0.94
SCFD1-221ENST00000556534 SRPK2P78362 688 aaKnown RBP9.17□□□□□ -0.94
SCFD1-221ENST00000556534 CLN3Q13286 438 aa9.17□□□□□ -0.94
SCFD1-221ENST00000556534 TRIM47Q96LD4 638 aa9.17□□□□□ -0.94
SCFD1-221ENST00000556534 INSM2Q96T92 566 aaPredicted RBP9.17□□□□□ -0.94
SCFD1-221ENST00000556534 SOS2Q07890 1332 aaPredicted RBP9.16□□□□□ -0.94
SCFD1-221ENST00000556534 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP9.16□□□□□ -0.94
SCFD1-221ENST00000556534 TMEM229AB2RXF0 380 aa9.16□□□□□ -0.94
SCFD1-221ENST00000556534 WASLO00401 505 aaPredicted RBP9.16□□□□□ -0.94
SCFD1-221ENST00000556534 CTSOP43234 321 aaPredicted RBP9.16□□□□□ -0.94
SCFD1-221ENST00000556534 ATP1A2P50993 1020 aa9.16□□□□□ -0.94
SCFD1-221ENST00000556534 FOXD4L5Q5VV16 416 aaPredicted RBP9.16□□□□□ -0.94
SCFD1-221ENST00000556534 OGFOD1Q8N543 542 aa9.16□□□□□ -0.94
SCFD1-221ENST00000556534 DNAAF2Q9NVR5 837 aaKnown RBP9.16□□□□□ -0.94
SCFD1-221ENST00000556534 POTECB2RU33 542 aa9.15□□□□□ -0.94
SCFD1-221ENST00000556534 ZBTB7BO15156 539 aaPredicted RBP9.15□□□□□ -0.94
SCFD1-221ENST00000556534 DKK1O94907 266 aa9.15□□□□□ -0.94
SCFD1-221ENST00000556534 GDF10P55107 478 aa9.15□□□□□ -0.94
SCFD1-221ENST00000556534 CRTC2Q53ET0 693 aaPredicted RBP9.15□□□□□ -0.94
SCFD1-221ENST00000556534 SIX5Q8N196 739 aa9.15□□□□□ -0.94
SCFD1-221ENST00000556534 ZNF594Q96JF6 807 aaPredicted RBP9.15□□□□□ -0.94
SCFD1-221ENST00000556534 SENP2Q9HC62 589 aa9.15□□□□□ -0.94
SCFD1-221ENST00000556534 HRH3Q9Y5N1 445 aa9.15□□□□□ -0.94
SCFD1-221ENST00000556534 FAM196BA6NMK8 535 aa9.14□□□□□ -0.95
SCFD1-221ENST00000556534 USP17L15C9J2P7 530 aa9.14□□□□□ -0.95
SCFD1-221ENST00000556534 USP17L10C9JJH3 530 aa9.14□□□□□ -0.95
SCFD1-221ENST00000556534 USP17L13C9JLJ4 530 aa9.14□□□□□ -0.95
SCFD1-221ENST00000556534 USP17L12C9JPN9 530 aa9.14□□□□□ -0.95
SCFD1-221ENST00000556534 USP17L11C9JVI0 530 aa9.14□□□□□ -0.95
SCFD1-221ENST00000556534 USP17L21D6R901 530 aa9.14□□□□□ -0.95
SCFD1-221ENST00000556534 USP17L18D6R9N7 530 aa9.14□□□□□ -0.95
SCFD1-221ENST00000556534 USP17L22D6RA61 530 aa9.14□□□□□ -0.95
SCFD1-221ENST00000556534 USP17L17D6RBQ6 530 aa9.14□□□□□ -0.95
SCFD1-221ENST00000556534 USP17L19D6RCP7 530 aa9.14□□□□□ -0.95
SCFD1-221ENST00000556534 USP17L20D6RJB6 530 aa9.14□□□□□ -0.95
SCFD1-221ENST00000556534 MEN1O00255 615 aa9.14□□□□□ -0.95
SCFD1-221ENST00000556534 RASA1P20936 1047 aa9.14□□□□□ -0.95
SCFD1-221ENST00000556534 PSME1Q06323 249 aa9.14□□□□□ -0.95
SCFD1-221ENST00000556534 USP17L24Q0WX57 530 aa9.14□□□□□ -0.95
SCFD1-221ENST00000556534 TPCN2Q8NHX9 752 aa9.14□□□□□ -0.95
SCFD1-221ENST00000556534 RNF217Q8TC41 542 aa9.14□□□□□ -0.95
SCFD1-221ENST00000556534 KIFC2Q96AC6 838 aa9.14□□□□□ -0.95
SCFD1-221ENST00000556534 PBXIP1Q96AQ6 731 aa9.14□□□□□ -0.95
SCFD1-221ENST00000556534 XAGE2Q96GT9 111 aa9.14□□□□□ -0.95
SCFD1-221ENST00000556534 VRTNQ9H8Y1 702 aa9.14□□□□□ -0.95
SCFD1-221ENST00000556534 POLMQ9NP87 494 aaPredicted RBP9.14□□□□□ -0.95
SCFD1-221ENST00000556534 INHAP05111 366 aa9.13□□□□□ -0.95
SCFD1-221ENST00000556534 PTK7Q13308 1070 aa9.13□□□□□ -0.95
SCFD1-221ENST00000556534 ESCO1Q5FWF5 840 aa9.13□□□□□ -0.95
SCFD1-221ENST00000556534 LARGE2Q8N3Y3 721 aa9.13□□□□□ -0.95
SCFD1-221ENST00000556534 CNKSR1Q969H4 720 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms