RNA–Protein interactions for RNA: ENST00000555405.5

NEK9-205, Transcript of NIMA related kinase 9, humanhuman

TSL 1 (best)

Gene NEK9, Length 3,357 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK9-205ENST00000555405 IL17REQ8NFR9 667 aa13.2□□□□□ -0.3
NEK9-205ENST00000555405 IL2RBP14784 551 aa13.19□□□□□ -0.3
NEK9-205ENST00000555405 FAM98CQ17RN3 349 aaKnown RBP13.19□□□□□ -0.3
NEK9-205ENST00000555405 KIF24Q5T7B8 1368 aa13.19□□□□□ -0.3
NEK9-205ENST00000555405 JCADQ9P266 1359 aa13.19□□□□□ -0.3
NEK9-205ENST00000555405 ZCRB1Q8TBF4 217 aaKnown RBP13.19□□□□□ -0.3
NEK9-205ENST00000555405 CLUAP1Q96AJ1 413 aa13.19□□□□□ -0.3
NEK9-205ENST00000555405 USP21Q9UK80 565 aa13.19□□□□□ -0.3
NEK9-205ENST00000555405 SHPRHQ149N8 1683 aa13.19□□□□□ -0.3
NEK9-205ENST00000555405 FANCIQ9NVI1 1328 aa13.18□□□□□ -0.3
NEK9-205ENST00000555405 GNAI1P63096 354 aa13.18□□□□□ -0.3
NEK9-205ENST00000555405 CALD1Q05682 793 aaKnown RBP13.18□□□□□ -0.3
NEK9-205ENST00000555405 AMOTQ4VCS5 1084 aa13.18□□□□□ -0.3
NEK9-205ENST00000555405 FAM182BQ5T319 152 aa13.18□□□□□ -0.3
NEK9-205ENST00000555405 MBIPQ9NS73 344 aa13.18□□□□□ -0.3
NEK9-205ENST00000555405 ZNF521Q96K83 1311 aa13.18□□□□□ -0.3
NEK9-205ENST00000555405 SLC39A6Q13433 755 aa13.18□□□□□ -0.3
NEK9-205ENST00000555405 NGEFQ8N5V2 710 aa13.18□□□□□ -0.3
NEK9-205ENST00000555405 TSPYL6Q8N831 410 aa13.18□□□□□ -0.3
NEK9-205ENST00000555405 EIF2S2P20042 333 aaKnown RBP13.17□□□□□ -0.3
NEK9-205ENST00000555405 LTN1O94822 1766 aa13.17□□□□□ -0.3
NEK9-205ENST00000555405 CAMTA1Q9Y6Y1 1673 aa13.17□□□□□ -0.3
NEK9-205ENST00000555405 CARD10Q9BWT7 1032 aa13.17□□□□□ -0.3
NEK9-205ENST00000555405 PHLPP1O60346 1717 aa13.17□□□□□ -0.3
NEK9-205ENST00000555405 CPDO75976 1380 aa13.17□□□□□ -0.3
NEK9-205ENST00000555405 EXOC5O00471 708 aa13.17□□□□□ -0.3
NEK9-205ENST00000555405 SLIT3O75094 1523 aa13.16□□□□□ -0.3
NEK9-205ENST00000555405 CCDC27Q2M243 656 aa13.16□□□□□ -0.3
NEK9-205ENST00000555405 ALS2Q96Q42 1657 aa13.16□□□□□ -0.3
NEK9-205ENST00000555405 IFNL2Q8IZJ0 200 aa13.16□□□□□ -0.3
NEK9-205ENST00000555405 NFATC2IPQ8NCF5 419 aa13.16□□□□□ -0.3
NEK9-205ENST00000555405 SMC4Q9NTJ3 1288 aa13.16□□□□□ -0.3
NEK9-205ENST00000555405 KCNQ3O43525 872 aa13.15□□□□□ -0.3
NEK9-205ENST00000555405 AKAP4Q5JQC9 854 aa13.15□□□□□ -0.3
NEK9-205ENST00000555405 C8orf58Q8NAV2 365 aa13.15□□□□□ -0.3
NEK9-205ENST00000555405 CYP27B1O15528 508 aa13.15□□□□□ -0.3
NEK9-205ENST00000555405 ACSBG1Q96GR2 724 aa13.15□□□□□ -0.3
NEK9-205ENST00000555405 BTBD11A6QL63 1104 aa13.15□□□□□ -0.3
NEK9-205ENST00000555405 KDRP35968 1356 aa13.14□□□□□ -0.31
NEK9-205ENST00000555405 MAP3K5Q99683 1374 aa13.14□□□□□ -0.31
NEK9-205ENST00000555405 CABP4P57796 275 aa13.14□□□□□ -0.31
NEK9-205ENST00000555405 CFAP44Q96MT7 982 aa13.14□□□□□ -0.31
NEK9-205ENST00000555405 RNMTO43148 476 aaKnown RBP13.14□□□□□ -0.31
NEK9-205ENST00000555405 TAF7Q15545 349 aaPredicted RBP13.14□□□□□ -0.31
NEK9-205ENST00000555405 RGPD5Q99666 1765 aa13.14□□□□□ -0.31
NEK9-205ENST00000555405 TWISTNBQ3B726 338 aaPredicted RBP13.14□□□□□ -0.31
NEK9-205ENST00000555405 AFF2P51816 1311 aa13.13□□□□□ -0.31
NEK9-205ENST00000555405 PTCD1O75127 700 aaKnown RBP13.13□□□□□ -0.31
NEK9-205ENST00000555405 UNC5CLQ8IV45 518 aa13.13□□□□□ -0.31
NEK9-205ENST00000555405 ARXQ96QS3 562 aa13.13□□□□□ -0.31
NEK9-205ENST00000555405 PHKG2P15735 406 aa13.13□□□□□ -0.31
NEK9-205ENST00000555405 DDB1Q16531 1140 aa13.13□□□□□ -0.31
NEK9-205ENST00000555405 PHF23Q9BUL5 403 aaPredicted RBP13.13□□□□□ -0.31
NEK9-205ENST00000555405 MARF1Q9Y4F3 1742 aaKnown RBP13.13□□□□□ -0.31
NEK9-205ENST00000555405 ZNF428Q96B54 188 aa13.12□□□□□ -0.31
NEK9-205ENST00000555405 BCL11AQ9H165 835 aa13.12□□□□□ -0.31
NEK9-205ENST00000555405 IFT57Q9NWB7 429 aa13.12□□□□□ -0.31
NEK9-205ENST00000555405 COL5A2P05997 1499 aaPredicted RBP13.12□□□□□ -0.31
NEK9-205ENST00000555405 ZNF330Q9Y3S2 320 aaPredicted RBP13.12□□□□□ -0.31
NEK9-205ENST00000555405 C20orf194Q5TEA3 1177 aa13.11□□□□□ -0.31
NEK9-205ENST00000555405 QTRT2Q9H974 415 aaKnown RBP13.11□□□□□ -0.31
NEK9-205ENST00000555405 TNNQ9UQP3 1299 aa13.11□□□□□ -0.31
NEK9-205ENST00000555405 RGPD2P0DJD1 1756 aa13.11□□□□□ -0.31
NEK9-205ENST00000555405 NHSL1Q5SYE7 1610 aa13.11□□□□□ -0.31
NEK9-205ENST00000555405 RRP1P56182 461 aaKnown RBP13.11□□□□□ -0.31
NEK9-205ENST00000555405 MEGF6O75095 1541 aa13.11□□□□□ -0.31
NEK9-205ENST00000555405 ANXA1P04083 346 aa13.11□□□□□ -0.31
NEK9-205ENST00000555405 SSH1Q8WYL5 1049 aa13.11□□□□□ -0.31
NEK9-205ENST00000555405 TTC5Q8N0Z6 440 aa13.1□□□□□ -0.31
NEK9-205ENST00000555405 IQSEC2Q5JU85 1478 aa13.1□□□□□ -0.31
NEK9-205ENST00000555405 PIP4K2AP48426 406 aaPredicted RBP13.1□□□□□ -0.31
NEK9-205ENST00000555405 AHDC1Q5TGY3 1603 aaPredicted RBP13.1□□□□□ -0.31
NEK9-205ENST00000555405 CHL1O00533 1208 aa13.09□□□□□ -0.31
NEK9-205ENST00000555405 RARSP54136 660 aaKnown RBP13.09□□□□□ -0.31
NEK9-205ENST00000555405 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.09□□□□□ -0.31
NEK9-205ENST00000555405 PANK1Q8TE04 598 aa13.09□□□□□ -0.31
NEK9-205ENST00000555405 RBM42Q9BTD8 480 aaKnown RBP13.09□□□□□ -0.31
NEK9-205ENST00000555405 CRB1P82279 1406 aa13.09□□□□□ -0.31
NEK9-205ENST00000555405 SPATA31A6Q5VVP1 1343 aa13.09□□□□□ -0.31
NEK9-205ENST00000555405 TRMT2AQ8IZ69 625 aaKnown RBP13.09□□□□□ -0.31
NEK9-205ENST00000555405 PHRF1Q9P1Y6 1649 aaKnown RBP13.09□□□□□ -0.31
NEK9-205ENST00000555405 EXOC6Q8TAG9 804 aa13.08□□□□□ -0.32
NEK9-205ENST00000555405 PRAMEF22A3QJZ6 481 aa13.08□□□□□ -0.32
NEK9-205ENST00000555405 FTSJ3Q8IY81 847 aaKnown RBP13.08□□□□□ -0.32
NEK9-205ENST00000555405 IL16Q14005 1332 aa13.08□□□□□ -0.32
NEK9-205ENST00000555405 SPATA31A1Q5TZJ5 1347 aa13.08□□□□□ -0.32
NEK9-205ENST00000555405 PCDH11XQ9BZA7 1347 aa13.08□□□□□ -0.32
NEK9-205ENST00000555405 PCDH11YQ9BZA8 1340 aa13.08□□□□□ -0.32
NEK9-205ENST00000555405 PRIM1P49642 420 aaKnown RBP13.07□□□□□ -0.32
NEK9-205ENST00000555405 DCAF5Q96JK2 942 aa13.07□□□□□ -0.32
NEK9-205ENST00000555405 COG6Q9Y2V7 657 aa13.07□□□□□ -0.32
NEK9-205ENST00000555405 COL16A1Q07092 1604 aaPredicted RBP13.07□□□□□ -0.32
NEK9-205ENST00000555405 VAMP4O75379 141 aa13.07□□□□□ -0.32
NEK9-205ENST00000555405 B4GALNT3Q6L9W6 998 aa13.07□□□□□ -0.32
NEK9-205ENST00000555405 NOB1Q9ULX3 412 aaKnown RBP13.07□□□□□ -0.32
NEK9-205ENST00000555405 HTATSF1O43719 755 aaKnown RBP13.07□□□□□ -0.32
NEK9-205ENST00000555405 SLC4A2P04920 1241 aa13.07□□□□□ -0.32
NEK9-205ENST00000555405 CRBNQ96SW2 442 aa13.07□□□□□ -0.32
NEK9-205ENST00000555405 TMOD3Q9NYL9 352 aa13.07□□□□□ -0.32
NEK9-205ENST00000555405 HSP90AB1P08238 724 aaKnown RBP13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 137.7 ms