RNA–Protein interactions for RNA: ENST00000554074.1

SLIRP-203, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 3

Gene SLIRP, Length 445 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-203ENST00000554074 FLT4P35916 1363 aa9.2□□□□□ -0.94
SLIRP-203ENST00000554074 TAF1LQ8IZX4 1826 aa9.19□□□□□ -0.94
SLIRP-203ENST00000554074 SLC15A2Q16348 729 aa9.19□□□□□ -0.94
SLIRP-203ENST00000554074 ACSBG1Q96GR2 724 aa9.19□□□□□ -0.94
SLIRP-203ENST00000554074 NSD3Q9BZ95 1437 aa9.19□□□□□ -0.94
SLIRP-203ENST00000554074 CHD4Q14839 1912 aa9.19□□□□□ -0.94
SLIRP-203ENST00000554074 FBLN1P23142 703 aa9.18□□□□□ -0.94
SLIRP-203ENST00000554074 NCAPD2Q15021 1401 aa9.18□□□□□ -0.94
SLIRP-203ENST00000554074 RRS1Q15050 365 aaKnown RBP9.18□□□□□ -0.94
SLIRP-203ENST00000554074 NBPF6Q5VWK0 638 aa9.18□□□□□ -0.94
SLIRP-203ENST00000554074 ZCRB1Q8TBF4 217 aaKnown RBP9.18□□□□□ -0.94
SLIRP-203ENST00000554074 NBPF4Q96M43 638 aa9.18□□□□□ -0.94
SLIRP-203ENST00000554074 CARD14Q9BXL6 1004 aa9.18□□□□□ -0.94
SLIRP-203ENST00000554074 PCGF6Q9BYE7 350 aa9.18□□□□□ -0.94
SLIRP-203ENST00000554074 SLC27A3Q5K4L6 730 aa9.17□□□□□ -0.94
SLIRP-203ENST00000554074 DDX54Q8TDD1 881 aaKnown RBP9.17□□□□□ -0.94
SLIRP-203ENST00000554074 PPP1R1BQ9UD71 204 aaPredicted RBP9.17□□□□□ -0.94
SLIRP-203ENST00000554074 TOGARAM1Q9Y4F4 1720 aa9.17□□□□□ -0.94
SLIRP-203ENST00000554074 NSD2O96028 1365 aa9.16□□□□□ -0.94
SLIRP-203ENST00000554074 HSP90AB2PQ58FF8 381 aa9.16□□□□□ -0.94
SLIRP-203ENST00000554074 RAPGEF4Q8WZA2 1011 aa9.16□□□□□ -0.94
SLIRP-203ENST00000554074 C5P01031 1676 aa9.16□□□□□ -0.94
SLIRP-203ENST00000554074 PLEKHG2Q9H7P9 1386 aa9.15□□□□□ -0.94
SLIRP-203ENST00000554074 PCDH11XQ9BZA7 1347 aa9.15□□□□□ -0.94
SLIRP-203ENST00000554074 PCDH11YQ9BZA8 1340 aa9.15□□□□□ -0.94
SLIRP-203ENST00000554074 TATP17735 454 aaPredicted RBP9.15□□□□□ -0.94
SLIRP-203ENST00000554074 PTGER2P43116 358 aa9.15□□□□□ -0.94
SLIRP-203ENST00000554074 EIF4G2P78344 907 aaKnown RBP eCLIP9.15□□□□□ -0.94
SLIRP-203ENST00000554074 PDGFDQ9GZP0 370 aaPredicted RBP9.15□□□□□ -0.94
SLIRP-203ENST00000554074 MTFR1LQ9H019 292 aa9.15□□□□□ -0.94
SLIRP-203ENST00000554074 LRRC4BQ9NT99 713 aa9.15□□□□□ -0.94
SLIRP-203ENST00000554074 WASHC2AQ641Q2 1341 aa9.14□□□□□ -0.95
SLIRP-203ENST00000554074 HMGB2P26583 209 aaKnown RBP9.14□□□□□ -0.95
SLIRP-203ENST00000554074 PRIM1P49642 420 aaKnown RBP9.14□□□□□ -0.95
SLIRP-203ENST00000554074 SLC16A10Q8TF71 515 aa9.14□□□□□ -0.95
SLIRP-203ENST00000554074 AKT1S1Q96B36 256 aa9.14□□□□□ -0.95
SLIRP-203ENST00000554074 SGIP1Q9BQI5 828 aa9.14□□□□□ -0.95
SLIRP-203ENST00000554074 MAP3K5Q99683 1374 aa9.13□□□□□ -0.95
SLIRP-203ENST00000554074 DCAF8L1A6NGE4 600 aa9.13□□□□□ -0.95
SLIRP-203ENST00000554074 ZBTB7AO95365 584 aa9.13□□□□□ -0.95
SLIRP-203ENST00000554074 ZNF827Q17R98 1081 aa9.13□□□□□ -0.95
SLIRP-203ENST00000554074 USHBP1Q8N6Y0 703 aa9.13□□□□□ -0.95
SLIRP-203ENST00000554074 EMILIN1Q9Y6C2 1016 aa9.13□□□□□ -0.95
SLIRP-203ENST00000554074 UBR3Q6ZT12 1888 aa9.13□□□□□ -0.95
SLIRP-203ENST00000554074 HSPA5P11021 654 aaKnown RBP9.12□□□□□ -0.95
SLIRP-203ENST00000554074 SYTL4Q96C24 671 aaPredicted RBP9.12□□□□□ -0.95
SLIRP-203ENST00000554074 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.12□□□□□ -0.95
SLIRP-203ENST00000554074 ATF5Q9Y2D1 282 aaPredicted RBP9.12□□□□□ -0.95
SLIRP-203ENST00000554074 ZNF831Q5JPB2 1677 aa9.11□□□□□ -0.95
SLIRP-203ENST00000554074 VIRMAQ69YN4 1812 aaKnown RBP9.11□□□□□ -0.95
SLIRP-203ENST00000554074 CYP27B1O15528 508 aa9.11□□□□□ -0.95
SLIRP-203ENST00000554074 NKX1-1Q15270 411 aaPredicted RBP9.11□□□□□ -0.95
SLIRP-203ENST00000554074 CCER1Q8TC90 406 aaPredicted RBP9.11□□□□□ -0.95
SLIRP-203ENST00000554074 POLKQ9UBT6 870 aa9.11□□□□□ -0.95
SLIRP-203ENST00000554074 C4BP0C0L5 1744 aa9.11□□□□□ -0.95
SLIRP-203ENST00000554074 PNPLA7Q6ZV29 1317 aa9.1□□□□□ -0.95
SLIRP-203ENST00000554074 CCNL1Q9UK58 526 aaPredicted RBP9.1□□□□□ -0.95
SLIRP-203ENST00000554074 SPG7Q9UQ90 795 aa9.1□□□□□ -0.95
SLIRP-203ENST00000554074 PPM1GO15355 546 aaPredicted RBP9.09□□□□□ -0.95
SLIRP-203ENST00000554074 SMARCC1Q92922 1105 aaPredicted RBP9.09□□□□□ -0.95
SLIRP-203ENST00000554074 ARXQ96QS3 562 aa9.09□□□□□ -0.95
SLIRP-203ENST00000554074 EYA1Q99502 592 aa9.09□□□□□ -0.95
SLIRP-203ENST00000554074 SYT17Q9BSW7 474 aa9.09□□□□□ -0.95
SLIRP-203ENST00000554074 FHDC1Q9C0D6 1143 aaPredicted RBP9.09□□□□□ -0.95
SLIRP-203ENST00000554074 PANK3Q9H999 370 aa9.09□□□□□ -0.95
SLIRP-203ENST00000554074 TFCP2L1Q9NZI6 479 aa9.09□□□□□ -0.95
SLIRP-203ENST00000554074 PALLDQ8WX93 1383 aa9.09□□□□□ -0.95
SLIRP-203ENST00000554074 YY1P25490 414 aa9.08□□□□□ -0.96
SLIRP-203ENST00000554074 EIF4A2Q14240 407 aaKnown RBP9.08□□□□□ -0.96
SLIRP-203ENST00000554074 POLR3GLQ9BT43 218 aa9.08□□□□□ -0.96
SLIRP-203ENST00000554074 SCN11AQ9UI33 1791 aa9.08□□□□□ -0.96
SLIRP-203ENST00000554074 IGSF1Q8N6C5 1336 aa9.07□□□□□ -0.96
SLIRP-203ENST00000554074 POLD1P28340 1107 aa9.07□□□□□ -0.96
SLIRP-203ENST00000554074 KCNQ4P56696 695 aa9.07□□□□□ -0.96
SLIRP-203ENST00000554074 MPRIPQ6WCQ1 1025 aa9.07□□□□□ -0.96
SLIRP-203ENST00000554074 FLAD1Q8NFF5 587 aa9.07□□□□□ -0.96
SLIRP-203ENST00000554074 COL5A3P25940 1745 aaPredicted RBP9.07□□□□□ -0.96
SLIRP-203ENST00000554074 IFNL2Q8IZJ0 200 aa9.06□□□□□ -0.96
SLIRP-203ENST00000554074 PHKG2P15735 406 aa9.05□□□□□ -0.96
SLIRP-203ENST00000554074 COL23A1Q86Y22 540 aaPredicted RBP9.05□□□□□ -0.96
SLIRP-203ENST00000554074 PIGBQ92521 554 aa9.05□□□□□ -0.96
SLIRP-203ENST00000554074 KNSTRNQ9Y448 316 aa9.05□□□□□ -0.96
SLIRP-203ENST00000554074 CICQ96RK0 1608 aaPredicted RBP9.05□□□□□ -0.96
SLIRP-203ENST00000554074 MYH14Q7Z406 1995 aaKnown RBP9.04□□□□□ -0.96
SLIRP-203ENST00000554074 KDRP35968 1356 aa9.04□□□□□ -0.96
SLIRP-203ENST00000554074 HSP90AB1P08238 724 aaKnown RBP9.04□□□□□ -0.96
SLIRP-203ENST00000554074 TNNT2P45379 298 aaPredicted RBP9.04□□□□□ -0.96
SLIRP-203ENST00000554074 MORC1Q86VD1 984 aa9.04□□□□□ -0.96
SLIRP-203ENST00000554074 TMOD3Q9NYL9 352 aa9.04□□□□□ -0.96
SLIRP-203ENST00000554074 KIF7Q2M1P5 1343 aa9.04□□□□□ -0.96
SLIRP-203ENST00000554074 KIF13BQ9NQT8 1826 aa9.03□□□□□ -0.96
SLIRP-203ENST00000554074 LOC102724428A0A0B4J2F2 783 aa9.03□□□□□ -0.96
SLIRP-203ENST00000554074 ERVV-2B6SEH9 535 aa9.03□□□□□ -0.96
SLIRP-203ENST00000554074 SIK1P57059 783 aa9.03□□□□□ -0.96
SLIRP-203ENST00000554074 AMOTQ4VCS5 1084 aa9.03□□□□□ -0.96
SLIRP-203ENST00000554074 PLEKHO1Q53GL0 409 aaPredicted RBP9.03□□□□□ -0.96
SLIRP-203ENST00000554074 AMER1Q5JTC6 1135 aaPredicted RBP9.03□□□□□ -0.96
SLIRP-203ENST00000554074 DCAF5Q96JK2 942 aa9.03□□□□□ -0.96
SLIRP-203ENST00000554074 SSFA2P28290 1259 aa9.02□□□□□ -0.97
SLIRP-203ENST00000554074 AK7Q96M32 723 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms