RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 TMEM121BQ9BXQ6 578 aaPredicted RBP6.77□□□□□ -1.33
LIMA1-212ENST00000552491 PNNQ9H307 717 aaKnown RBP6.77□□□□□ -1.33
LIMA1-212ENST00000552491 HMOX1P09601 288 aa6.77□□□□□ -1.33
LIMA1-212ENST00000552491 SSFA2P28290 1259 aa6.77□□□□□ -1.33
LIMA1-212ENST00000552491 GAS2L2Q8NHY3 880 aa6.77□□□□□ -1.33
LIMA1-212ENST00000552491 NAP1L5Q96NT1 182 aaPredicted RBP6.77□□□□□ -1.33
LIMA1-212ENST00000552491 FAM135BQ49AJ0 1406 aa6.77□□□□□ -1.33
LIMA1-212ENST00000552491 ATAD2Q6PL18 1390 aa6.77□□□□□ -1.33
LIMA1-212ENST00000552491 RAPGEF3O95398 923 aa6.76□□□□□ -1.33
LIMA1-212ENST00000552491 BRPF1P55201 1214 aaPredicted RBP6.76□□□□□ -1.33
LIMA1-212ENST00000552491 CABP1Q9NZU7 370 aa6.76□□□□□ -1.33
LIMA1-212ENST00000552491 POLKQ9UBT6 870 aa6.76□□□□□ -1.33
LIMA1-212ENST00000552491 ISY1Q9ULR0 285 aaKnown RBP6.76□□□□□ -1.33
LIMA1-212ENST00000552491 CIZ1Q9ULV3 898 aaPredicted RBP6.76□□□□□ -1.33
LIMA1-212ENST00000552491 PIK3R4Q99570 1358 aa6.76□□□□□ -1.33
LIMA1-212ENST00000552491 KNDC1Q76NI1 1749 aa6.76□□□□□ -1.33
LIMA1-212ENST00000552491 PTCH1Q13635 1447 aa6.76□□□□□ -1.33
LIMA1-212ENST00000552491 CLTCQ00610 1675 aaKnown RBP6.76□□□□□ -1.33
LIMA1-212ENST00000552491 ESPNB1AK53 854 aa6.76□□□□□ -1.33
LIMA1-212ENST00000552491 FCHSD2O94868 740 aa6.76□□□□□ -1.33
LIMA1-212ENST00000552491 GSPT1P15170 499 aaKnown RBP6.76□□□□□ -1.33
LIMA1-212ENST00000552491 SUGP2Q8IX01 1082 aaKnown RBP eCLIP6.76□□□□□ -1.33
LIMA1-212ENST00000552491 TERF2IPQ9NYB0 399 aa6.76□□□□□ -1.33
LIMA1-212ENST00000552491 MAP2P11137 1827 aaKnown RBP6.76□□□□□ -1.33
LIMA1-212ENST00000552491 CDC42BPGQ6DT37 1551 aa6.76□□□□□ -1.33
LIMA1-212ENST00000552491 K7ELQ4 463 aaPredicted RBP6.75□□□□□ -1.33
LIMA1-212ENST00000552491 CDK19Q9BWU1 502 aa6.75□□□□□ -1.33
LIMA1-212ENST00000552491 KIF20BQ96Q89 1820 aa6.75□□□□□ -1.33
LIMA1-212ENST00000552491 ABCC4O15439 1325 aa6.75□□□□□ -1.33
LIMA1-212ENST00000552491 YTHDC2Q9H6S0 1430 aaKnown RBP6.75□□□□□ -1.33
LIMA1-212ENST00000552491 NFE2L2Q16236 605 aa6.75□□□□□ -1.33
LIMA1-212ENST00000552491 GCC1Q96CN9 775 aa6.75□□□□□ -1.33
LIMA1-212ENST00000552491 MBIPQ9NS73 344 aa6.75□□□□□ -1.33
LIMA1-212ENST00000552491 ZFYVE9O95405 1425 aa6.75□□□□□ -1.33
LIMA1-212ENST00000552491 ARHGEF40Q8TER5 1519 aa6.75□□□□□ -1.33
LIMA1-212ENST00000552491 ZNF853P0CG23 659 aa6.74□□□□□ -1.33
LIMA1-212ENST00000552491 C8orf58Q8NAV2 365 aa6.74□□□□□ -1.33
LIMA1-212ENST00000552491 GBP4Q96PP9 640 aa6.74□□□□□ -1.33
LIMA1-212ENST00000552491 EMILIN1Q9Y6C2 1016 aa6.74□□□□□ -1.33
LIMA1-212ENST00000552491 DLG5Q8TDM6 1919 aa6.74□□□□□ -1.33
LIMA1-212ENST00000552491 FAM83GA6ND36 823 aa6.74□□□□□ -1.33
LIMA1-212ENST00000552491 NUBP1P53384 320 aa6.74□□□□□ -1.33
LIMA1-212ENST00000552491 C16orf71Q8IYS4 520 aaPredicted RBP6.74□□□□□ -1.33
LIMA1-212ENST00000552491 ZNF428Q96B54 188 aa6.74□□□□□ -1.33
LIMA1-212ENST00000552491 TMEM131LA2VDJ0 1609 aa6.74□□□□□ -1.33
LIMA1-212ENST00000552491 HSP90AA1P07900 732 aaKnown RBP6.73□□□□□ -1.33
LIMA1-212ENST00000552491 PKP1Q13835 747 aa6.73□□□□□ -1.33
LIMA1-212ENST00000552491 HDGFL2Q7Z4V5 671 aaPredicted RBP6.73□□□□□ -1.33
LIMA1-212ENST00000552491 PLEKHM2Q8IWE5 1019 aa6.73□□□□□ -1.33
LIMA1-212ENST00000552491 PLCD3Q8N3E9 789 aa6.73□□□□□ -1.33
LIMA1-212ENST00000552491 OTUD7AQ8TE49 926 aaPredicted RBP6.73□□□□□ -1.33
LIMA1-212ENST00000552491 ARHGAP45Q92619 1136 aa6.73□□□□□ -1.33
LIMA1-212ENST00000552491 DIP2CQ9Y2E4 1556 aa6.73□□□□□ -1.33
LIMA1-212ENST00000552491 BAG4O95429 457 aaKnown RBP6.73□□□□□ -1.33
LIMA1-212ENST00000552491 PTMSP20962 102 aa6.73□□□□□ -1.33
LIMA1-212ENST00000552491 DCTN1Q14203 1278 aa6.73□□□□□ -1.33
LIMA1-212ENST00000552491 SKOR2Q2VWA4 1001 aaPredicted RBP6.73□□□□□ -1.33
LIMA1-212ENST00000552491 WAPLQ7Z5K2 1190 aa6.73□□□□□ -1.33
LIMA1-212ENST00000552491 CHMP4BQ9H444 224 aaKnown RBP6.73□□□□□ -1.33
LIMA1-212ENST00000552491 CDC45O75419 566 aa6.73□□□□□ -1.33
LIMA1-212ENST00000552491 IL13P35225 146 aa6.73□□□□□ -1.33
LIMA1-212ENST00000552491 ARHGAP31Q2M1Z3 1444 aa6.73□□□□□ -1.33
LIMA1-212ENST00000552491 TWISTNBQ3B726 338 aaPredicted RBP6.73□□□□□ -1.33
LIMA1-212ENST00000552491 FBXO31Q5XUX0 539 aaPredicted RBP6.73□□□□□ -1.33
LIMA1-212ENST00000552491 KRT24Q2M2I5 525 aa6.72□□□□□ -1.33
LIMA1-212ENST00000552491 CLEC17AQ6ZS10 378 aa6.72□□□□□ -1.33
LIMA1-212ENST00000552491 OCEL1Q9H607 264 aa6.72□□□□□ -1.33
LIMA1-212ENST00000552491 IFT57Q9NWB7 429 aa6.72□□□□□ -1.33
LIMA1-212ENST00000552491 SLC52A1Q9NWF4 448 aa6.72□□□□□ -1.33
LIMA1-212ENST00000552491 ALKQ9UM73 1620 aa6.72□□□□□ -1.33
LIMA1-212ENST00000552491 SNPHO15079 494 aa6.72□□□□□ -1.33
LIMA1-212ENST00000552491 GNAI1P63096 354 aa6.72□□□□□ -1.33
LIMA1-212ENST00000552491 NME9Q86XW9 330 aa6.72□□□□□ -1.33
LIMA1-212ENST00000552491 CHAMP1Q96JM3 812 aa6.72□□□□□ -1.33
LIMA1-212ENST00000552491 EIF2AK3Q9NZJ5 1116 aaKnown RBP6.72□□□□□ -1.33
LIMA1-212ENST00000552491 PREX1Q8TCU6 1659 aa6.72□□□□□ -1.33
LIMA1-212ENST00000552491 YEATS2Q9ULM3 1422 aa6.71□□□□□ -1.33
LIMA1-212ENST00000552491 CYP2E1P05181 493 aaPredicted RBP6.71□□□□□ -1.34
LIMA1-212ENST00000552491 KLHL40Q2TBA0 621 aa6.71□□□□□ -1.34
LIMA1-212ENST00000552491 USP26Q9BXU7 913 aa6.71□□□□□ -1.34
LIMA1-212ENST00000552491 DCTPP1Q9H773 170 aa6.71□□□□□ -1.34
LIMA1-212ENST00000552491 DDX49Q9Y6V7 483 aaKnown RBP6.71□□□□□ -1.34
LIMA1-212ENST00000552491 NCKAP5LQ9HCH0 1330 aa6.71□□□□□ -1.34
LIMA1-212ENST00000552491 ATP10DQ9P241 1426 aa6.71□□□□□ -1.34
LIMA1-212ENST00000552491 POTEB3A0JP26 581 aa6.71□□□□□ -1.34
LIMA1-212ENST00000552491 SMARCA5O60264 1052 aaPredicted RBP6.71□□□□□ -1.34
LIMA1-212ENST00000552491 NASPP49321 788 aaPredicted RBP6.71□□□□□ -1.34
LIMA1-212ENST00000552491 RRS1Q15050 365 aaKnown RBP6.71□□□□□ -1.34
LIMA1-212ENST00000552491 TTC22Q5TAA0 569 aa6.71□□□□□ -1.34
LIMA1-212ENST00000552491 POTEBQ6S5H4 581 aa6.71□□□□□ -1.34
LIMA1-212ENST00000552491 TRIM44Q96DX7 344 aaPredicted RBP6.71□□□□□ -1.34
LIMA1-212ENST00000552491 CFAP44Q96MT7 982 aa6.71□□□□□ -1.34
LIMA1-212ENST00000552491 PPP1R9BQ96SB3 815 aa6.71□□□□□ -1.34
LIMA1-212ENST00000552491 RGS12O14924 1447 aa6.7□□□□□ -1.34
LIMA1-212ENST00000552491 MCTP1Q6DN14 999 aa6.7□□□□□ -1.34
LIMA1-212ENST00000552491 ZGPATQ8N5A5 531 aaKnown RBP6.7□□□□□ -1.34
LIMA1-212ENST00000552491 KRTAP3-3Q9BYR6 98 aa6.7□□□□□ -1.34
LIMA1-212ENST00000552491 KRTAP3-2Q9BYR7 98 aa6.7□□□□□ -1.34
LIMA1-212ENST00000552491 LMBRD1Q9NUN5 540 aa6.7□□□□□ -1.34
LIMA1-212ENST00000552491 RIMS2Q9UQ26 1411 aa6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms