RNA–Protein interactions for RNA: ENST00000547614.5

CHMP1A-203, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2

Gene CHMP1A, Length 653 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-203ENST00000547614 USHBP1Q8N6Y0 703 aa25.67■■□□□ 1.7
CHMP1A-203ENST00000547614 PPM1GO15355 546 aaPredicted RBP25.66■■□□□ 1.7
CHMP1A-203ENST00000547614 ANO8Q9HCE9 1232 aaPredicted RBP25.66■■□□□ 1.7
CHMP1A-203ENST00000547614 POLKQ9UBT6 870 aa25.66■■□□□ 1.7
CHMP1A-203ENST00000547614 TATP17735 454 aaPredicted RBP25.65■■□□□ 1.7
CHMP1A-203ENST00000547614 ANKRD26Q9UPS8 1709 aa25.65■■□□□ 1.7
CHMP1A-203ENST00000547614 MAP2P11137 1827 aaKnown RBP25.64■■□□□ 1.7
CHMP1A-203ENST00000547614 NSD2O96028 1365 aa25.63■■□□□ 1.69
CHMP1A-203ENST00000547614 BTAF1O14981 1849 aa25.63■■□□□ 1.69
CHMP1A-203ENST00000547614 SHANK3Q9BYB0 1731 aa25.61■■□□□ 1.69
CHMP1A-203ENST00000547614 PRIM1P49642 420 aaKnown RBP25.61■■□□□ 1.69
CHMP1A-203ENST00000547614 STK32BQ9NY57 414 aa25.61■■□□□ 1.69
CHMP1A-203ENST00000547614 SLC15A2Q16348 729 aa25.6■■□□□ 1.69
CHMP1A-203ENST00000547614 SPON1Q9HCB6 807 aa25.6■■□□□ 1.69
CHMP1A-203ENST00000547614 NCAPD2Q15021 1401 aa25.6■■□□□ 1.69
CHMP1A-203ENST00000547614 TNNT2P45379 298 aaPredicted RBP25.58■■□□□ 1.69
CHMP1A-203ENST00000547614 SYTL4Q96C24 671 aaPredicted RBP25.58■■□□□ 1.69
CHMP1A-203ENST00000547614 PCDH11XQ9BZA7 1347 aa25.58■■□□□ 1.69
CHMP1A-203ENST00000547614 PCDH11YQ9BZA8 1340 aa25.58■■□□□ 1.69
CHMP1A-203ENST00000547614 EYA1Q99502 592 aa25.57■■□□□ 1.68
CHMP1A-203ENST00000547614 KNSTRNQ9Y448 316 aa25.57■■□□□ 1.68
CHMP1A-203ENST00000547614 SLC27A3Q5K4L6 730 aa25.56■■□□□ 1.68
CHMP1A-203ENST00000547614 KIF7Q2M1P5 1343 aa25.56■■□□□ 1.68
CHMP1A-203ENST00000547614 DOT1LQ8TEK3 1739 aa25.54■■□□□ 1.68
CHMP1A-203ENST00000547614 MORC1Q86VD1 984 aa25.54■■□□□ 1.68
CHMP1A-203ENST00000547614 LRRC4BQ9NT99 713 aa25.54■■□□□ 1.68
CHMP1A-203ENST00000547614 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP25.53■■□□□ 1.68
CHMP1A-203ENST00000547614 CASZ1Q86V15 1759 aa25.53■■□□□ 1.68
CHMP1A-203ENST00000547614 CYP27B1O15528 508 aa25.52■■□□□ 1.68
CHMP1A-203ENST00000547614 EIF4A2Q14240 407 aaKnown RBP25.52■■□□□ 1.68
CHMP1A-203ENST00000547614 PDGFDQ9GZP0 370 aaPredicted RBP25.52■■□□□ 1.68
CHMP1A-203ENST00000547614 SPG7Q9UQ90 795 aa25.51■■□□□ 1.67
CHMP1A-203ENST00000547614 PAPPAQ13219 1627 aa25.51■■□□□ 1.67
CHMP1A-203ENST00000547614 PKD1L3Q7Z443 1732 aa25.49■■□□□ 1.67
CHMP1A-203ENST00000547614 PPP1R1BQ9UD71 204 aaPredicted RBP25.49■■□□□ 1.67
CHMP1A-203ENST00000547614 PLEKHG2Q9H7P9 1386 aa25.48■■□□□ 1.67
CHMP1A-203ENST00000547614 NKX1-1Q15270 411 aaPredicted RBP25.48■■□□□ 1.67
CHMP1A-203ENST00000547614 AMER1Q5JTC6 1135 aaPredicted RBP25.48■■□□□ 1.67
CHMP1A-203ENST00000547614 ZBTB7AO95365 584 aa25.46■■□□□ 1.67
CHMP1A-203ENST00000547614 AKT1S1Q96B36 256 aa25.46■■□□□ 1.67
CHMP1A-203ENST00000547614 LY75O60449 1722 aa25.46■■□□□ 1.67
CHMP1A-203ENST00000547614 IGSF1Q8N6C5 1336 aa25.45■■□□□ 1.66
CHMP1A-203ENST00000547614 PER1O15534 1290 aaPredicted RBP25.45■■□□□ 1.66
CHMP1A-203ENST00000547614 ZNF827Q17R98 1081 aa25.45■■□□□ 1.66
CHMP1A-203ENST00000547614 MTFR1LQ9H019 292 aa25.45■■□□□ 1.66
CHMP1A-203ENST00000547614 HMGB2P26583 209 aaKnown RBP25.44■■□□□ 1.66
CHMP1A-203ENST00000547614 CCNL1Q9UK58 526 aaPredicted RBP25.43■■□□□ 1.66
CHMP1A-203ENST00000547614 PTGER2P43116 358 aa25.42■■□□□ 1.66
CHMP1A-203ENST00000547614 MPRIPQ6WCQ1 1025 aa25.42■■□□□ 1.66
CHMP1A-203ENST00000547614 IFNL2Q8IZJ0 200 aa25.42■■□□□ 1.66
CHMP1A-203ENST00000547614 ATF5Q9Y2D1 282 aaPredicted RBP25.42■■□□□ 1.66
CHMP1A-203ENST00000547614 KCNQ4P56696 695 aa25.41■■□□□ 1.66
CHMP1A-203ENST00000547614 PHKG2P15735 406 aa25.4■■□□□ 1.66
CHMP1A-203ENST00000547614 SLC16A10Q8TF71 515 aa25.4■■□□□ 1.66
CHMP1A-203ENST00000547614 SMARCC1Q92922 1105 aaPredicted RBP25.39■■□□□ 1.66
CHMP1A-203ENST00000547614 TFCP2L1Q9NZI6 479 aa25.39■■□□□ 1.66
CHMP1A-203ENST00000547614 SGIP1Q9BQI5 828 aa25.38■■□□□ 1.65
CHMP1A-203ENST00000547614 QSER1Q2KHR3 1735 aa25.37■■□□□ 1.65
CHMP1A-203ENST00000547614 TOGARAM1Q9Y4F4 1720 aa25.37■■□□□ 1.65
CHMP1A-203ENST00000547614 PALLDQ8WX93 1383 aa25.37■■□□□ 1.65
CHMP1A-203ENST00000547614 PIGBQ92521 554 aa25.37■■□□□ 1.65
CHMP1A-203ENST00000547614 ITGB4P16144 1822 aa25.37■■□□□ 1.65
CHMP1A-203ENST00000547614 PLEKHO1Q53GL0 409 aaPredicted RBP25.36■■□□□ 1.65
CHMP1A-203ENST00000547614 PNPLA7Q6ZV29 1317 aa25.36■■□□□ 1.65
CHMP1A-203ENST00000547614 NPC1L1Q9UHC9 1359 aa25.35■■□□□ 1.65
CHMP1A-203ENST00000547614 AMOTQ4VCS5 1084 aa25.35■■□□□ 1.65
CHMP1A-203ENST00000547614 IL13P35225 146 aa25.34■■□□□ 1.65
CHMP1A-203ENST00000547614 TMOD3Q9NYL9 352 aa25.34■■□□□ 1.65
CHMP1A-203ENST00000547614 HSP90AB1P08238 724 aaKnown RBP25.33■■□□□ 1.65
CHMP1A-203ENST00000547614 MTHFSP49914 203 aa25.33■■□□□ 1.65
CHMP1A-203ENST00000547614 CC2D1BQ5T0F9 858 aaKnown RBP25.32■■□□□ 1.64
CHMP1A-203ENST00000547614 KDRP35968 1356 aa25.31■■□□□ 1.64
CHMP1A-203ENST00000547614 SULT6B1Q6IMI4 303 aa25.31■■□□□ 1.64
CHMP1A-203ENST00000547614 AEBP1Q8IUX7 1158 aa25.31■■□□□ 1.64
CHMP1A-203ENST00000547614 DCAF5Q96JK2 942 aa25.31■■□□□ 1.64
CHMP1A-203ENST00000547614 ERVV-2B6SEH9 535 aa25.3■■□□□ 1.64
CHMP1A-203ENST00000547614 ARXQ96QS3 562 aa25.3■■□□□ 1.64
CHMP1A-203ENST00000547614 DCAF8L1A6NGE4 600 aa25.29■■□□□ 1.64
CHMP1A-203ENST00000547614 ZNF530Q6P9A1 599 aaPredicted RBP25.28■■□□□ 1.64
CHMP1A-203ENST00000547614 C5P01031 1676 aa25.28■■□□□ 1.64
CHMP1A-203ENST00000547614 TUBGCP6Q96RT7 1819 aa25.28■■□□□ 1.64
CHMP1A-203ENST00000547614 FLAD1Q8NFF5 587 aa25.27■■□□□ 1.64
CHMP1A-203ENST00000547614 SYT17Q9BSW7 474 aa25.27■■□□□ 1.64
CHMP1A-203ENST00000547614 FHDC1Q9C0D6 1143 aaPredicted RBP25.27■■□□□ 1.64
CHMP1A-203ENST00000547614 ASAP1Q9ULH1 1129 aa25.27■■□□□ 1.64
CHMP1A-203ENST00000547614 TAF1LQ8IZX4 1826 aa25.26■■□□□ 1.63
CHMP1A-203ENST00000547614 LOC102724428A0A0B4J2F2 783 aa25.26■■□□□ 1.63
CHMP1A-203ENST00000547614 SIK1P57059 783 aa25.26■■□□□ 1.63
CHMP1A-203ENST00000547614 COL23A1Q86Y22 540 aaPredicted RBP25.26■■□□□ 1.63
CHMP1A-203ENST00000547614 POLD1P28340 1107 aa25.25■■□□□ 1.63
CHMP1A-203ENST00000547614 C1orf141Q5JVX7 400 aa25.25■■□□□ 1.63
CHMP1A-203ENST00000547614 COL24A1Q17RW2 1714 aa25.24■■□□□ 1.63
CHMP1A-203ENST00000547614 MAP3K5Q99683 1374 aa25.24■■□□□ 1.63
CHMP1A-203ENST00000547614 ATG3Q9NT62 314 aa25.24■■□□□ 1.63
CHMP1A-203ENST00000547614 DIAPH1O60610 1272 aaKnown RBP25.23■■□□□ 1.63
CHMP1A-203ENST00000547614 MSH5O43196 834 aa25.22■■□□□ 1.63
CHMP1A-203ENST00000547614 AK7Q96M32 723 aa25.21■■□□□ 1.63
CHMP1A-203ENST00000547614 KDM6AO15550 1401 aaPredicted RBP25.2■■□□□ 1.63
CHMP1A-203ENST00000547614 C4BP0C0L5 1744 aa25.2■■□□□ 1.63
CHMP1A-203ENST00000547614 CABP4P57796 275 aa25.2■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms