RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 SPDYE2BA6NHP3 402 aa11.87□□□□□ -0.51
USP28-215ENST00000545608 ZBTB7AO95365 584 aa11.87□□□□□ -0.51
USP28-215ENST00000545608 SPDYE6P0CI01 402 aa11.87□□□□□ -0.51
USP28-215ENST00000545608 HOXC9P31274 260 aa11.87□□□□□ -0.51
USP28-215ENST00000545608 TMF1P82094 1093 aa11.87□□□□□ -0.51
USP28-215ENST00000545608 SLC15A2Q16348 729 aa11.87□□□□□ -0.51
USP28-215ENST00000545608 SPDYE2Q495Y8 402 aa11.87□□□□□ -0.51
USP28-215ENST00000545608 FYB1O15117 783 aa11.86□□□□□ -0.51
USP28-215ENST00000545608 AMPHP49418 695 aa11.86□□□□□ -0.51
USP28-215ENST00000545608 DDX54Q8TDD1 881 aaKnown RBP11.86□□□□□ -0.51
USP28-215ENST00000545608 GGNBP2Q9H3C7 697 aa11.86□□□□□ -0.51
USP28-215ENST00000545608 ANKRD36BQ8N2N9 1353 aa11.86□□□□□ -0.51
USP28-215ENST00000545608 USP47Q96K76 1375 aa11.86□□□□□ -0.51
USP28-215ENST00000545608 RGPD3A6NKT7 1758 aaPredicted RBP11.86□□□□□ -0.51
USP28-215ENST00000545608 RGPD4Q7Z3J3 1758 aa11.86□□□□□ -0.51
USP28-215ENST00000545608 LTN1O94822 1766 aa11.85□□□□□ -0.51
USP28-215ENST00000545608 PTGER2P43116 358 aa11.85□□□□□ -0.51
USP28-215ENST00000545608 RRS1Q15050 365 aaKnown RBP11.85□□□□□ -0.51
USP28-215ENST00000545608 KLHL34Q8N239 644 aa11.84□□□□□ -0.51
USP28-215ENST00000545608 LRRC4BQ9NT99 713 aa11.84□□□□□ -0.51
USP28-215ENST00000545608 NBPF6Q5VWK0 638 aa11.83□□□□□ -0.52
USP28-215ENST00000545608 NBPF4Q96M43 638 aa11.83□□□□□ -0.52
USP28-215ENST00000545608 NHSQ6T4R5 1651 aa11.82□□□□□ -0.52
USP28-215ENST00000545608 PRIM1P49642 420 aaKnown RBP11.82□□□□□ -0.52
USP28-215ENST00000545608 PLCB2Q00722 1185 aa11.82□□□□□ -0.52
USP28-215ENST00000545608 ZNF827Q17R98 1081 aa11.82□□□□□ -0.52
USP28-215ENST00000545608 ZCRB1Q8TBF4 217 aaKnown RBP11.82□□□□□ -0.52
USP28-215ENST00000545608 CARD14Q9BXL6 1004 aa11.82□□□□□ -0.52
USP28-215ENST00000545608 CASZ1Q86V15 1759 aa11.82□□□□□ -0.52
USP28-215ENST00000545608 CDCA8Q53HL2 280 aa11.81□□□□□ -0.52
USP28-215ENST00000545608 USHBP1Q8N6Y0 703 aa11.81□□□□□ -0.52
USP28-215ENST00000545608 SGIP1Q9BQI5 828 aa11.81□□□□□ -0.52
USP28-215ENST00000545608 MTFR1LQ9H019 292 aa11.81□□□□□ -0.52
USP28-215ENST00000545608 HSP90AB2PQ58FF8 381 aa11.8□□□□□ -0.52
USP28-215ENST00000545608 SPOCK2Q92563 424 aa11.8□□□□□ -0.52
USP28-215ENST00000545608 SYTL4Q96C24 671 aaPredicted RBP11.8□□□□□ -0.52
USP28-215ENST00000545608 MEGF6O75095 1541 aa11.8□□□□□ -0.52
USP28-215ENST00000545608 RTL1A6NKG5 1358 aa11.79□□□□□ -0.52
USP28-215ENST00000545608 YY1P25490 414 aa11.79□□□□□ -0.52
USP28-215ENST00000545608 KCNQ4P56696 695 aa11.79□□□□□ -0.52
USP28-215ENST00000545608 AKT1S1Q96B36 256 aa11.79□□□□□ -0.52
USP28-215ENST00000545608 TIMELESSQ9UNS1 1208 aa11.79□□□□□ -0.52
USP28-215ENST00000545608 SSUH2Q9Y2M2 353 aa11.79□□□□□ -0.52
USP28-215ENST00000545608 SLC27A3Q5K4L6 730 aa11.78□□□□□ -0.52
USP28-215ENST00000545608 SYT17Q9BSW7 474 aa11.78□□□□□ -0.52
USP28-215ENST00000545608 PCGF6Q9BYE7 350 aa11.78□□□□□ -0.52
USP28-215ENST00000545608 FHDC1Q9C0D6 1143 aaPredicted RBP11.78□□□□□ -0.52
USP28-215ENST00000545608 NSD2O96028 1365 aa11.78□□□□□ -0.52
USP28-215ENST00000545608 FAM208AQ9UK61 1670 aaKnown RBP11.78□□□□□ -0.52
USP28-215ENST00000545608 BTAF1O14981 1849 aa11.77□□□□□ -0.52
USP28-215ENST00000545608 RAPGEF4Q8WZA2 1011 aa11.77□□□□□ -0.53
USP28-215ENST00000545608 EMILIN1Q9Y6C2 1016 aa11.77□□□□□ -0.53
USP28-215ENST00000545608 PAPPAQ13219 1627 aa11.77□□□□□ -0.53
USP28-215ENST00000545608 INSRP06213 1382 aa11.77□□□□□ -0.53
USP28-215ENST00000545608 KAT6BQ8WYB5 2073 aa11.77□□□□□ -0.53
USP28-215ENST00000545608 TATP17735 454 aaPredicted RBP11.76□□□□□ -0.53
USP28-215ENST00000545608 PLCD3Q8N3E9 789 aa11.76□□□□□ -0.53
USP28-215ENST00000545608 ARXQ96QS3 562 aa11.76□□□□□ -0.53
USP28-215ENST00000545608 CGNL1Q0VF96 1302 aa11.76□□□□□ -0.53
USP28-215ENST00000545608 NSD3Q9BZ95 1437 aa11.76□□□□□ -0.53
USP28-215ENST00000545608 MYOM1P52179 1685 aa11.75□□□□□ -0.53
USP28-215ENST00000545608 RGPD2P0DJD1 1756 aa11.75□□□□□ -0.53
USP28-215ENST00000545608 PNPLA7Q6ZV29 1317 aa11.75□□□□□ -0.53
USP28-215ENST00000545608 FLT4P35916 1363 aa11.75□□□□□ -0.53
USP28-215ENST00000545608 SMG6Q86US8 1419 aaKnown RBP11.75□□□□□ -0.53
USP28-215ENST00000545608 TFCP2L1Q9NZI6 479 aa11.74□□□□□ -0.53
USP28-215ENST00000545608 CCNL1Q9UK58 526 aaPredicted RBP11.74□□□□□ -0.53
USP28-215ENST00000545608 CLSPNQ9HAW4 1339 aa11.74□□□□□ -0.53
USP28-215ENST00000545608 KIF24Q5T7B8 1368 aa11.74□□□□□ -0.53
USP28-215ENST00000545608 PPM1GO15355 546 aaPredicted RBP11.73□□□□□ -0.53
USP28-215ENST00000545608 CYP27B1O15528 508 aa11.73□□□□□ -0.53
USP28-215ENST00000545608 SLC16A10Q8TF71 515 aa11.73□□□□□ -0.53
USP28-215ENST00000545608 POLR3GLQ9BT43 218 aa11.73□□□□□ -0.53
USP28-215ENST00000545608 PCDH11XQ9BZA7 1347 aa11.72□□□□□ -0.53
USP28-215ENST00000545608 PCDH11YQ9BZA8 1340 aa11.72□□□□□ -0.53
USP28-215ENST00000545608 SHANK3Q9BYB0 1731 aa11.72□□□□□ -0.53
USP28-215ENST00000545608 WASHC2AQ641Q2 1341 aa11.71□□□□□ -0.53
USP28-215ENST00000545608 MPRIPQ6WCQ1 1025 aa11.71□□□□□ -0.53
USP28-215ENST00000545608 EYA1Q99502 592 aa11.71□□□□□ -0.53
USP28-215ENST00000545608 POLKQ9UBT6 870 aa11.71□□□□□ -0.53
USP28-215ENST00000545608 DOT1LQ8TEK3 1739 aa11.71□□□□□ -0.54
USP28-215ENST00000545608 POLD1P28340 1107 aa11.7□□□□□ -0.54
USP28-215ENST00000545608 COL23A1Q86Y22 540 aaPredicted RBP11.7□□□□□ -0.54
USP28-215ENST00000545608 KIF20BQ96Q89 1820 aa11.7□□□□□ -0.54
USP28-215ENST00000545608 MAP3K5Q99683 1374 aa11.69□□□□□ -0.54
USP28-215ENST00000545608 HSPA5P11021 654 aaKnown RBP11.69□□□□□ -0.54
USP28-215ENST00000545608 TNNT2P45379 298 aaPredicted RBP11.69□□□□□ -0.54
USP28-215ENST00000545608 MIER1Q8N108 512 aa11.69□□□□□ -0.54
USP28-215ENST00000545608 NCAPD2Q15021 1401 aa11.69□□□□□ -0.54
USP28-215ENST00000545608 EIF4G2P78344 907 aaKnown RBP eCLIP11.68□□□□□ -0.54
USP28-215ENST00000545608 NKX1-1Q15270 411 aaPredicted RBP11.68□□□□□ -0.54
USP28-215ENST00000545608 PIGBQ92521 554 aa11.68□□□□□ -0.54
USP28-215ENST00000545608 LY75O60449 1722 aa11.68□□□□□ -0.54
USP28-215ENST00000545608 PALLDQ8WX93 1383 aa11.67□□□□□ -0.54
USP28-215ENST00000545608 ECM2O94769 699 aaPredicted RBP11.67□□□□□ -0.54
USP28-215ENST00000545608 EIF4A2Q14240 407 aaKnown RBP11.67□□□□□ -0.54
USP28-215ENST00000545608 PANK3Q9H999 370 aa11.67□□□□□ -0.54
USP28-215ENST00000545608 SPG7Q9UQ90 795 aa11.67□□□□□ -0.54
USP28-215ENST00000545608 GPR162Q16538 588 aa11.66□□□□□ -0.54
USP28-215ENST00000545608 MSL1Q68DK7 614 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms