RNA–Protein interactions for RNA: ENST00000542002.5

YBX3-212, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-212ENST00000542002 BCL11BQ9C0K0 894 aaPredicted RBP13.26□□□□□ -0.29
YBX3-212ENST00000542002 NPC1L1Q9UHC9 1359 aa13.26□□□□□ -0.29
YBX3-212ENST00000542002 IL13P35225 146 aa13.25□□□□□ -0.29
YBX3-212ENST00000542002 BAG6P46379 1132 aa13.25□□□□□ -0.29
YBX3-212ENST00000542002 MAP2P11137 1827 aaKnown RBP13.25□□□□□ -0.29
YBX3-212ENST00000542002 ANKRD26Q9UPS8 1709 aa13.25□□□□□ -0.29
YBX3-212ENST00000542002 NCAPD2Q15021 1401 aa13.24□□□□□ -0.29
YBX3-212ENST00000542002 TATP17735 454 aaPredicted RBP13.24□□□□□ -0.29
YBX3-212ENST00000542002 PROM2Q8N271 834 aa13.24□□□□□ -0.29
YBX3-212ENST00000542002 RAPGEF4Q8WZA2 1011 aa13.24□□□□□ -0.29
YBX3-212ENST00000542002 WNK3Q9BYP7 1800 aa13.24□□□□□ -0.29
YBX3-212ENST00000542002 CYP27B1O15528 508 aa13.23□□□□□ -0.29
YBX3-212ENST00000542002 ZEB1P37275 1124 aaPredicted RBP13.23□□□□□ -0.29
YBX3-212ENST00000542002 AEBP1Q8IUX7 1158 aa13.23□□□□□ -0.29
YBX3-212ENST00000542002 IGSF1Q8N6C5 1336 aa13.22□□□□□ -0.29
YBX3-212ENST00000542002 DDX10Q13206 875 aaKnown RBP13.22□□□□□ -0.29
YBX3-212ENST00000542002 RNF39Q9H2S5 420 aa13.22□□□□□ -0.29
YBX3-212ENST00000542002 PLSCR1O15162 318 aa13.21□□□□□ -0.29
YBX3-212ENST00000542002 PRIM1P49642 420 aaKnown RBP13.21□□□□□ -0.29
YBX3-212ENST00000542002 TNS1Q9HBL0 1735 aaKnown RBP13.21□□□□□ -0.3
YBX3-212ENST00000542002 PPP2R1AP30153 589 aa13.19□□□□□ -0.3
YBX3-212ENST00000542002 SULT6B1Q6IMI4 303 aa13.19□□□□□ -0.3
YBX3-212ENST00000542002 RGPD1P0DJD0 1748 aa13.19□□□□□ -0.3
YBX3-212ENST00000542002 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.18□□□□□ -0.31e-8■■□□□ 12.9
YBX3-212ENST00000542002 DIAPH1O60610 1272 aaKnown RBP13.17□□□□□ -0.3
YBX3-212ENST00000542002 NKX1-1Q15270 411 aaPredicted RBP13.17□□□□□ -0.3
YBX3-212ENST00000542002 SPG7Q9UQ90 795 aa13.17□□□□□ -0.3
YBX3-212ENST00000542002 SBF2Q86WG5 1849 aa13.17□□□□□ -0.3
YBX3-212ENST00000542002 SRCAPQ6ZRS2 3230 aa13.17□□□□□ -0.3
YBX3-212ENST00000542002 SHANK3Q9BYB0 1731 aa13.16□□□□□ -0.3
YBX3-212ENST00000542002 PCDH11XQ9BZA7 1347 aa13.16□□□□□ -0.3
YBX3-212ENST00000542002 PCDH11YQ9BZA8 1340 aa13.16□□□□□ -0.3
YBX3-212ENST00000542002 PSDA5PKW4 1024 aaPredicted RBP13.16□□□□□ -0.3
YBX3-212ENST00000542002 HMOX1P09601 288 aa13.16□□□□□ -0.3
YBX3-212ENST00000542002 PHKG2P15735 406 aa13.16□□□□□ -0.3
YBX3-212ENST00000542002 SYTL4Q96C24 671 aaPredicted RBP13.16□□□□□ -0.3
YBX3-212ENST00000542002 R3HDM1Q15032 1099 aaKnown RBP13.15□□□□□ -0.3
YBX3-212ENST00000542002 TXNRD1Q16881 649 aa13.15□□□□□ -0.3
YBX3-212ENST00000542002 PPP4R3CPQ6ZMV5 832 aa13.15□□□□□ -0.3
YBX3-212ENST00000542002 LRRC4BQ9NT99 713 aa13.15□□□□□ -0.3
YBX3-212ENST00000542002 KDRP35968 1356 aa13.15□□□□□ -0.3
YBX3-212ENST00000542002 PARD3Q8TEW0 1356 aa13.15□□□□□ -0.3
YBX3-212ENST00000542002 COL3A1P02461 1466 aaPredicted RBP13.15□□□□□ -0.3
YBX3-212ENST00000542002 KCNQ4P56696 695 aa13.14□□□□□ -0.31
YBX3-212ENST00000542002 PLEKHO1Q53GL0 409 aaPredicted RBP13.13□□□□□ -0.31
YBX3-212ENST00000542002 MPRIPQ6WCQ1 1025 aa13.13□□□□□ -0.31
YBX3-212ENST00000542002 IFNL2Q8IZJ0 200 aa13.13□□□□□ -0.31
YBX3-212ENST00000542002 PIGBQ92521 554 aa13.13□□□□□ -0.31
YBX3-212ENST00000542002 ANO8Q9HCE9 1232 aaPredicted RBP13.13□□□□□ -0.31
YBX3-212ENST00000542002 U2SURPO15042 1029 aaKnown RBP13.12□□□□□ -0.31
YBX3-212ENST00000542002 NHSQ6T4R5 1651 aa13.12□□□□□ -0.31
YBX3-212ENST00000542002 DCAF8L1A6NGE4 600 aa13.11□□□□□ -0.31
YBX3-212ENST00000542002 AMOTQ4VCS5 1084 aa13.11□□□□□ -0.31
YBX3-212ENST00000542002 ZNF530Q6P9A1 599 aaPredicted RBP13.11□□□□□ -0.31
YBX3-212ENST00000542002 PDGFDQ9GZP0 370 aaPredicted RBP13.11□□□□□ -0.31
YBX3-212ENST00000542002 PKD1L3Q7Z443 1732 aa13.1□□□□□ -0.31
YBX3-212ENST00000542002 MTHFSDQ2M296 383 aaKnown RBP13.1□□□□□ -0.31
YBX3-212ENST00000542002 PHACTR3Q96KR7 559 aa13.1□□□□□ -0.31
YBX3-212ENST00000542002 ZNF316A6NFI3 1004 aaPredicted RBP13.09□□□□□ -0.31
YBX3-212ENST00000542002 NBPF14Q5TI25 921 aa13.09□□□□□ -0.31
YBX3-212ENST00000542002 CFAP53Q96M91 514 aa13.09□□□□□ -0.31
YBX3-212ENST00000542002 LGR6Q9HBX8 967 aa13.09□□□□□ -0.31
YBX3-212ENST00000542002 PLEKHG2Q9H7P9 1386 aa13.08□□□□□ -0.31
YBX3-212ENST00000542002 RALBP1Q15311 655 aa13.08□□□□□ -0.32
YBX3-212ENST00000542002 DCAF5Q96JK2 942 aa13.08□□□□□ -0.32
YBX3-212ENST00000542002 RSPH6AQ9H0K4 717 aa13.08□□□□□ -0.32
YBX3-212ENST00000542002 ASAP1Q9ULH1 1129 aa13.08□□□□□ -0.32
YBX3-212ENST00000542002 RREB1Q92766 1687 aa13.08□□□□□ -0.32
YBX3-212ENST00000542002 KDM6AO15550 1401 aaPredicted RBP13.07□□□□□ -0.32
YBX3-212ENST00000542002 BTAF1O14981 1849 aa13.07□□□□□ -0.32
YBX3-212ENST00000542002 ERVV-2B6SEH9 535 aa13.07□□□□□ -0.32
YBX3-212ENST00000542002 SLC15A2Q16348 729 aa13.07□□□□□ -0.32
YBX3-212ENST00000542002 ZNF827Q17R98 1081 aa13.07□□□□□ -0.32
YBX3-212ENST00000542002 ATG3Q9NT62 314 aa13.07□□□□□ -0.32
YBX3-212ENST00000542002 NUP188Q5SRE5 1749 aa13.07□□□□□ -0.32
YBX3-212ENST00000542002 DOT1LQ8TEK3 1739 aa13.07□□□□□ -0.32
YBX3-212ENST00000542002 TOGARAM1Q9Y4F4 1720 aa13.06□□□□□ -0.32
YBX3-212ENST00000542002 U2AF1L5P0DN76 240 aaPredicted RBP13.06□□□□□ -0.32
YBX3-212ENST00000542002 U2AF1Q01081 240 aaKnown RBP eCLIP13.06□□□□□ -0.323e-16■■□□□ 13.9
YBX3-212ENST00000542002 AKAP4Q5JQC9 854 aa13.06□□□□□ -0.32
YBX3-212ENST00000542002 SLC27A3Q5K4L6 730 aa13.06□□□□□ -0.32
YBX3-212ENST00000542002 NFATC2IPQ8NCF5 419 aa13.06□□□□□ -0.32
YBX3-212ENST00000542002 AKT1S1Q96B36 256 aa13.06□□□□□ -0.32
YBX3-212ENST00000542002 TMOD3Q9NYL9 352 aa13.06□□□□□ -0.32
YBX3-212ENST00000542002 HSP90AB1P08238 724 aaKnown RBP13.05□□□□□ -0.32
YBX3-212ENST00000542002 PRKAR2BP31323 418 aa13.05□□□□□ -0.32
YBX3-212ENST00000542002 C1orf141Q5JVX7 400 aa13.05□□□□□ -0.32
YBX3-212ENST00000542002 CCNL1Q9UK58 526 aaPredicted RBP13.05□□□□□ -0.32
YBX3-212ENST00000542002 NUDCQ9Y266 331 aa13.05□□□□□ -0.32
YBX3-212ENST00000542002 RGPD3A6NKT7 1758 aaPredicted RBP13.04□□□□□ -0.32
YBX3-212ENST00000542002 RGPD4Q7Z3J3 1758 aa13.04□□□□□ -0.32
YBX3-212ENST00000542002 FCHSD2O94868 740 aa13.04□□□□□ -0.32
YBX3-212ENST00000542002 SLC4A9Q96Q91 983 aa13.04□□□□□ -0.32
YBX3-212ENST00000542002 PRKRIP1Q9H875 184 aaPredicted RBP13.04□□□□□ -0.32
YBX3-212ENST00000542002 STK32BQ9NY57 414 aa13.04□□□□□ -0.32
YBX3-212ENST00000542002 PALLDQ8WX93 1383 aa13.04□□□□□ -0.32
YBX3-212ENST00000542002 RNMTO43148 476 aaKnown RBP13.03□□□□□ -0.32
YBX3-212ENST00000542002 CABP4P57796 275 aa13.03□□□□□ -0.32
YBX3-212ENST00000542002 IL17REQ8NFR9 667 aa13.03□□□□□ -0.32
YBX3-212ENST00000542002 KAT6BQ8WYB5 2073 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms