RNA–Protein interactions for RNA: ENST00000540537.5

CHFR-217, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 3

Gene CHFR, Length 913 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-217ENST00000540537 ZCRB1Q8TBF4 217 aaKnown RBP28.94■■■□□ 2.22
CHFR-217ENST00000540537 MAP2P11137 1827 aaKnown RBP28.92■■■□□ 2.22
CHFR-217ENST00000540537 USHBP1Q8N6Y0 703 aa28.92■■■□□ 2.22
CHFR-217ENST00000540537 RAPGEF4Q8WZA2 1011 aa28.91■■■□□ 2.22
CHFR-217ENST00000540537 PANK3Q9H999 370 aa28.89■■■□□ 2.22
CHFR-217ENST00000540537 TATP17735 454 aaPredicted RBP28.88■■■□□ 2.21
CHFR-217ENST00000540537 STK32BQ9NY57 414 aa28.88■■■□□ 2.21
CHFR-217ENST00000540537 DOT1LQ8TEK3 1739 aa28.88■■■□□ 2.21
CHFR-217ENST00000540537 WASHC2AQ641Q2 1341 aa28.88■■■□□ 2.21
CHFR-217ENST00000540537 CASZ1Q86V15 1759 aa28.88■■■□□ 2.21
CHFR-217ENST00000540537 PPM1GO15355 546 aaPredicted RBP28.87■■■□□ 2.21
CHFR-217ENST00000540537 NCAPD2Q15021 1401 aa28.86■■■□□ 2.21
CHFR-217ENST00000540537 SPON1Q9HCB6 807 aa28.85■■■□□ 2.21
CHFR-217ENST00000540537 POLKQ9UBT6 870 aa28.85■■■□□ 2.21
CHFR-217ENST00000540537 NSD2O96028 1365 aa28.85■■■□□ 2.21
CHFR-217ENST00000540537 PAPPAQ13219 1627 aa28.84■■■□□ 2.21
CHFR-217ENST00000540537 SLC15A2Q16348 729 aa28.84■■■□□ 2.21
CHFR-217ENST00000540537 PRIM1P49642 420 aaKnown RBP28.82■■■□□ 2.2
CHFR-217ENST00000540537 PCDH11XQ9BZA7 1347 aa28.82■■■□□ 2.2
CHFR-217ENST00000540537 PCDH11YQ9BZA8 1340 aa28.82■■■□□ 2.2
CHFR-217ENST00000540537 SYTL4Q96C24 671 aaPredicted RBP28.81■■■□□ 2.2
CHFR-217ENST00000540537 PKD1L3Q7Z443 1732 aa28.8■■■□□ 2.2
CHFR-217ENST00000540537 TNNT2P45379 298 aaPredicted RBP28.79■■■□□ 2.2
CHFR-217ENST00000540537 SLC27A3Q5K4L6 730 aa28.79■■■□□ 2.2
CHFR-217ENST00000540537 EYA1Q99502 592 aa28.77■■■□□ 2.2
CHFR-217ENST00000540537 PDGFDQ9GZP0 370 aaPredicted RBP28.77■■■□□ 2.2
CHFR-217ENST00000540537 LRRC4BQ9NT99 713 aa28.77■■■□□ 2.2
CHFR-217ENST00000540537 KIF7Q2M1P5 1343 aa28.75■■■□□ 2.19
CHFR-217ENST00000540537 LY75O60449 1722 aa28.75■■■□□ 2.19
CHFR-217ENST00000540537 CYP27B1O15528 508 aa28.74■■■□□ 2.19
CHFR-217ENST00000540537 PPP1R1BQ9UD71 204 aaPredicted RBP28.74■■■□□ 2.19
CHFR-217ENST00000540537 KNSTRNQ9Y448 316 aa28.74■■■□□ 2.19
CHFR-217ENST00000540537 EIF4A2Q14240 407 aaKnown RBP28.73■■■□□ 2.19
CHFR-217ENST00000540537 ZBTB7AO95365 584 aa28.72■■■□□ 2.19
CHFR-217ENST00000540537 ZNF827Q17R98 1081 aa28.72■■■□□ 2.19
CHFR-217ENST00000540537 MORC1Q86VD1 984 aa28.72■■■□□ 2.19
CHFR-217ENST00000540537 SPG7Q9UQ90 795 aa28.71■■■□□ 2.19
CHFR-217ENST00000540537 AKT1S1Q96B36 256 aa28.7■■■□□ 2.18
CHFR-217ENST00000540537 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP28.7■■■□□ 2.18
CHFR-217ENST00000540537 PLEKHG2Q9H7P9 1386 aa28.69■■■□□ 2.18
CHFR-217ENST00000540537 QSER1Q2KHR3 1735 aa28.69■■■□□ 2.18
CHFR-217ENST00000540537 MTFR1LQ9H019 292 aa28.68■■■□□ 2.18
CHFR-217ENST00000540537 TOGARAM1Q9Y4F4 1720 aa28.68■■■□□ 2.18
CHFR-217ENST00000540537 PTGER2P43116 358 aa28.67■■■□□ 2.18
CHFR-217ENST00000540537 NKX1-1Q15270 411 aaPredicted RBP28.67■■■□□ 2.18
CHFR-217ENST00000540537 IGSF1Q8N6C5 1336 aa28.67■■■□□ 2.18
CHFR-217ENST00000540537 ITGB4P16144 1822 aa28.66■■■□□ 2.18
CHFR-217ENST00000540537 AMER1Q5JTC6 1135 aaPredicted RBP28.66■■■□□ 2.18
CHFR-217ENST00000540537 ATF5Q9Y2D1 282 aaPredicted RBP28.66■■■□□ 2.18
CHFR-217ENST00000540537 CCNL1Q9UK58 526 aaPredicted RBP28.65■■■□□ 2.18
CHFR-217ENST00000540537 KCNQ4P56696 695 aa28.64■■■□□ 2.18
CHFR-217ENST00000540537 MPRIPQ6WCQ1 1025 aa28.62■■■□□ 2.17
CHFR-217ENST00000540537 TUBGCP6Q96RT7 1819 aa28.62■■■□□ 2.17
CHFR-217ENST00000540537 IFNL2Q8IZJ0 200 aa28.6■■■□□ 2.17
CHFR-217ENST00000540537 SGIP1Q9BQI5 828 aa28.6■■■□□ 2.17
CHFR-217ENST00000540537 PALLDQ8WX93 1383 aa28.6■■■□□ 2.17
CHFR-217ENST00000540537 PHKG2P15735 406 aa28.59■■■□□ 2.17
CHFR-217ENST00000540537 TFCP2L1Q9NZI6 479 aa28.59■■■□□ 2.17
CHFR-217ENST00000540537 PNPLA7Q6ZV29 1317 aa28.59■■■□□ 2.17
CHFR-217ENST00000540537 PER1O15534 1290 aaPredicted RBP28.58■■■□□ 2.17
CHFR-217ENST00000540537 HMGB2P26583 209 aaKnown RBP28.58■■■□□ 2.17
CHFR-217ENST00000540537 SLC16A10Q8TF71 515 aa28.58■■■□□ 2.17
CHFR-217ENST00000540537 SMARCC1Q92922 1105 aaPredicted RBP28.58■■■□□ 2.17
CHFR-217ENST00000540537 PIGBQ92521 554 aa28.57■■■□□ 2.16
CHFR-217ENST00000540537 C5P01031 1676 aa28.57■■■□□ 2.16
CHFR-217ENST00000540537 TAF1LQ8IZX4 1826 aa28.55■■■□□ 2.16
CHFR-217ENST00000540537 COL24A1Q17RW2 1714 aa28.53■■■□□ 2.16
CHFR-217ENST00000540537 PLEKHO1Q53GL0 409 aaPredicted RBP28.53■■■□□ 2.16
CHFR-217ENST00000540537 TMOD3Q9NYL9 352 aa28.53■■■□□ 2.16
CHFR-217ENST00000540537 IL13P35225 146 aa28.51■■■□□ 2.15
CHFR-217ENST00000540537 AMOTQ4VCS5 1084 aa28.51■■■□□ 2.15
CHFR-217ENST00000540537 NPC1L1Q9UHC9 1359 aa28.5■■■□□ 2.15
CHFR-217ENST00000540537 HSP90AB1P08238 724 aaKnown RBP28.5■■■□□ 2.15
CHFR-217ENST00000540537 AEBP1Q8IUX7 1158 aa28.5■■■□□ 2.15
CHFR-217ENST00000540537 ARXQ96QS3 562 aa28.5■■■□□ 2.15
CHFR-217ENST00000540537 KDRP35968 1356 aa28.5■■■□□ 2.15
CHFR-217ENST00000540537 DCAF8L1A6NGE4 600 aa28.49■■■□□ 2.15
CHFR-217ENST00000540537 FHDC1Q9C0D6 1143 aaPredicted RBP28.49■■■□□ 2.15
CHFR-217ENST00000540537 MTHFSP49914 203 aa28.48■■■□□ 2.15
CHFR-217ENST00000540537 CC2D1BQ5T0F9 858 aaKnown RBP28.48■■■□□ 2.15
CHFR-217ENST00000540537 C4BP0C0L5 1744 aa28.47■■■□□ 2.15
CHFR-217ENST00000540537 SULT6B1Q6IMI4 303 aa28.47■■■□□ 2.15
CHFR-217ENST00000540537 ZNF530Q6P9A1 599 aaPredicted RBP28.47■■■□□ 2.15
CHFR-217ENST00000540537 DCAF5Q96JK2 942 aa28.47■■■□□ 2.15
CHFR-217ENST00000540537 SYT17Q9BSW7 474 aa28.47■■■□□ 2.15
CHFR-217ENST00000540537 MAP3K5Q99683 1374 aa28.47■■■□□ 2.15
CHFR-217ENST00000540537 ERVV-2B6SEH9 535 aa28.46■■■□□ 2.15
CHFR-217ENST00000540537 POLD1P28340 1107 aa28.46■■■□□ 2.15
CHFR-217ENST00000540537 LOC102724428A0A0B4J2F2 783 aa28.45■■■□□ 2.14
CHFR-217ENST00000540537 SIK1P57059 783 aa28.45■■■□□ 2.14
CHFR-217ENST00000540537 COL23A1Q86Y22 540 aaPredicted RBP28.45■■■□□ 2.14
CHFR-217ENST00000540537 ASAP1Q9ULH1 1129 aa28.45■■■□□ 2.14
CHFR-217ENST00000540537 FLAD1Q8NFF5 587 aa28.44■■■□□ 2.14
CHFR-217ENST00000540537 KDM6AO15550 1401 aaPredicted RBP28.43■■■□□ 2.14
CHFR-217ENST00000540537 MSH5O43196 834 aa28.42■■■□□ 2.14
CHFR-217ENST00000540537 ATG3Q9NT62 314 aa28.42■■■□□ 2.14
CHFR-217ENST00000540537 C1orf141Q5JVX7 400 aa28.41■■■□□ 2.14
CHFR-217ENST00000540537 AK7Q96M32 723 aa28.41■■■□□ 2.14
CHFR-217ENST00000540537 UBR3Q6ZT12 1888 aa28.4■■■□□ 2.14
CHFR-217ENST00000540537 LINC00116Q8NCU8 138 aa28.38■■■□□ 2.13
Retrieved 100 of 20,778 RNA–protein pairs in 93.3 ms