RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 TRIM52Q96A61 297 aa8.3□□□□□ -1.08
VPS13A-213ENST00000539950 GDPD2Q9HCC8 539 aa8.3□□□□□ -1.08
VPS13A-213ENST00000539950 A0A1W2PRU2 124 aa8.29□□□□□ -1.08
VPS13A-213ENST00000539950 MEN1O00255 615 aa8.29□□□□□ -1.08
VPS13A-213ENST00000539950 RNF144AP50876 292 aaPredicted RBP8.29□□□□□ -1.08
VPS13A-213ENST00000539950 CCDC85AQ96PX6 553 aaPredicted RBP8.29□□□□□ -1.08
VPS13A-213ENST00000539950 OSBPL3Q9H4L5 887 aa8.29□□□□□ -1.08
VPS13A-213ENST00000539950 PRM3Q9NNZ6 103 aa8.29□□□□□ -1.08
VPS13A-213ENST00000539950 TRAK2O60296 914 aa8.28□□□□□ -1.08
VPS13A-213ENST00000539950 ITGA6P23229 1130 aa8.28□□□□□ -1.08
VPS13A-213ENST00000539950 KRT76Q01546 638 aa8.28□□□□□ -1.08
VPS13A-213ENST00000539950 MCM6Q14566 821 aa8.28□□□□□ -1.08
VPS13A-213ENST00000539950 LYSMD3Q7Z3D4 306 aa8.28□□□□□ -1.08
VPS13A-213ENST00000539950 PRICKLE2Q7Z3G6 844 aa8.28□□□□□ -1.08
VPS13A-213ENST00000539950 NANOS1Q8WY41 292 aaKnown RBP8.28□□□□□ -1.08
VPS13A-213ENST00000539950 CDCA7Q9BWT1 371 aaPredicted RBP8.28□□□□□ -1.08
VPS13A-213ENST00000539950 RHOQP17081 205 aa8.27□□□□□ -1.09
VPS13A-213ENST00000539950 ABL2P42684 1182 aa8.27□□□□□ -1.09
VPS13A-213ENST00000539950 VAC14Q08AM6 782 aa8.27□□□□□ -1.09
VPS13A-213ENST00000539950 TSGA10IPQ3SY00 556 aa8.27□□□□□ -1.09
VPS13A-213ENST00000539950 EIF4G2P78344 907 aaKnown RBP eCLIP8.26□□□□□ -1.09
VPS13A-213ENST00000539950 CYP2U1Q7Z449 544 aa8.26□□□□□ -1.09
VPS13A-213ENST00000539950 VWA5B2Q8N398 1253 aa8.26□□□□□ -1.09
VPS13A-213ENST00000539950 ARHGEF10LQ9HCE6 1279 aa8.26□□□□□ -1.09
VPS13A-213ENST00000539950 CLN3Q13286 438 aa8.25□□□□□ -1.09
VPS13A-213ENST00000539950 PHTF2Q8N3S3 785 aa8.25□□□□□ -1.09
VPS13A-213ENST00000539950 RAB6BQ9NRW1 208 aa8.25□□□□□ -1.09
VPS13A-213ENST00000539950 CDC14CA4D256 554 aa8.24□□□□□ -1.09
VPS13A-213ENST00000539950 GPC1P35052 558 aa8.24□□□□□ -1.09
VPS13A-213ENST00000539950 CNTNAP3BQ96NU0 1288 aa8.24□□□□□ -1.09
VPS13A-213ENST00000539950 CNTNAP3Q9BZ76 1288 aa8.24□□□□□ -1.09
VPS13A-213ENST00000539950 CUEDC1Q9NWM3 386 aaPredicted RBP8.24□□□□□ -1.09
VPS13A-213ENST00000539950 RNFT1Q5M7Z0 435 aa8.23□□□□□ -1.09
VPS13A-213ENST00000539950 NLRP3Q96P20 1036 aa8.23□□□□□ -1.09
VPS13A-213ENST00000539950 COL25A1Q9BXS0 654 aaPredicted RBP8.23□□□□□ -1.09
VPS13A-213ENST00000539950 GRIP2Q9C0E4 1043 aa8.23□□□□□ -1.09
VPS13A-213ENST00000539950 ESF1Q9H501 851 aaKnown RBP8.23□□□□□ -1.09
VPS13A-213ENST00000539950 FAM181BA6NEQ2 426 aa8.22□□□□□ -1.09
VPS13A-213ENST00000539950 SLFNL1Q499Z3 407 aa8.22□□□□□ -1.09
VPS13A-213ENST00000539950 SLC27A3Q5K4L6 730 aa8.22□□□□□ -1.09
VPS13A-213ENST00000539950 SV2AQ7L0J3 742 aa8.22□□□□□ -1.09
VPS13A-213ENST00000539950 MYCP01106 439 aaPredicted RBP8.21□□□□□ -1.1
VPS13A-213ENST00000539950 IL2RAP01589 272 aa8.21□□□□□ -1.1
VPS13A-213ENST00000539950 POU4F2Q12837 409 aa8.21□□□□□ -1.1
VPS13A-213ENST00000539950 DOLKQ9UPQ8 538 aa8.21□□□□□ -1.1
VPS13A-213ENST00000539950 COG6Q9Y2V7 657 aa8.21□□□□□ -1.1
VPS13A-213ENST00000539950 GNRH1P01148 92 aa8.2□□□□□ -1.1
VPS13A-213ENST00000539950 WASHC4Q2M389 1173 aa8.2□□□□□ -1.1
VPS13A-213ENST00000539950 RNF135Q8IUD6 432 aa8.2□□□□□ -1.1
VPS13A-213ENST00000539950 CNKSR1Q969H4 720 aa8.2□□□□□ -1.1
VPS13A-213ENST00000539950 CHIC2Q9UKJ5 165 aa8.2□□□□□ -1.1
VPS13A-213ENST00000539950 STAU1O95793 577 aaKnown RBP8.19□□□□□ -1.1
VPS13A-213ENST00000539950 OXLD1Q5BKU9 147 aa8.19□□□□□ -1.1
VPS13A-213ENST00000539950 NBPF10Q6P3W6 841 aaKnown RBP8.19□□□□□ -1.1
VPS13A-213ENST00000539950 NBPF15Q8N660 670 aa8.19□□□□□ -1.1
VPS13A-213ENST00000539950 POM121Q96HA1 1249 aa8.19□□□□□ -1.1
VPS13A-213ENST00000539950 SPATA31C2B4DYI2 1134 aa8.18□□□□□ -1.1
VPS13A-213ENST00000539950 CENPCQ03188 943 aa8.18□□□□□ -1.1
VPS13A-213ENST00000539950 ESYT1Q9BSJ8 1104 aa8.18□□□□□ -1.1
VPS13A-213ENST00000539950 HRH3Q9Y5N1 445 aa8.18□□□□□ -1.1
VPS13A-213ENST00000539950 USP4Q13107 963 aa8.17□□□□□ -1.1
VPS13A-213ENST00000539950 SEMA3FQ13275 785 aa8.17□□□□□ -1.1
VPS13A-213ENST00000539950 DBN1Q16643 649 aa8.17□□□□□ -1.1
VPS13A-213ENST00000539950 ZNF837Q96EG3 531 aaPredicted RBP8.17□□□□□ -1.1
VPS13A-213ENST00000539950 DYRK1BQ9Y463 629 aa8.17□□□□□ -1.1
VPS13A-213ENST00000539950 RIPOR1Q6ZS17 1223 aa8.16□□□□□ -1.1
VPS13A-213ENST00000539950 XAGE2Q96GT9 111 aa8.16□□□□□ -1.1
VPS13A-213ENST00000539950 GAS2L1Q99501 681 aaPredicted RBP8.16□□□□□ -1.1
VPS13A-213ENST00000539950 ETNK1Q9HBU6 452 aa8.16□□□□□ -1.1
VPS13A-213ENST00000539950 WASLO00401 505 aaPredicted RBP8.15□□□□□ -1.1
VPS13A-213ENST00000539950 GAS6Q14393 721 aa8.15□□□□□ -1.1
VPS13A-213ENST00000539950 TAS1R3Q7RTX0 852 aa8.15□□□□□ -1.1
VPS13A-213ENST00000539950 TRIM22Q8IYM9 498 aa8.15□□□□□ -1.1
VPS13A-213ENST00000539950 PLPP7Q8NBV4 271 aa8.15□□□□□ -1.1
VPS13A-213ENST00000539950 WHAMMQ8TF30 809 aa8.15□□□□□ -1.1
VPS13A-213ENST00000539950 FHDC1Q9C0D6 1143 aaPredicted RBP8.15□□□□□ -1.1
VPS13A-213ENST00000539950 GPR25O00155 361 aa8.14□□□□□ -1.11
VPS13A-213ENST00000539950 PIK3CDO00329 1044 aa8.14□□□□□ -1.11
VPS13A-213ENST00000539950 SLURP2P0DP57 97 aa8.14□□□□□ -1.11
VPS13A-213ENST00000539950 SOX11P35716 441 aa8.14□□□□□ -1.11
VPS13A-213ENST00000539950 WDR44Q5JSH3 913 aa8.14□□□□□ -1.11
VPS13A-213ENST00000539950 ZSCAN10Q96SZ4 725 aaPredicted RBP8.14□□□□□ -1.11
VPS13A-213ENST00000539950 TIMMDC1Q9NPL8 285 aa8.14□□□□□ -1.11
VPS13A-213ENST00000539950 PHKA2P46019 1235 aa8.13□□□□□ -1.11
VPS13A-213ENST00000539950 ZNF385CQ66K41 422 aaPredicted RBP8.13□□□□□ -1.11
VPS13A-213ENST00000539950 MAP7D1Q3KQU3 841 aa8.12□□□□□ -1.11
VPS13A-213ENST00000539950 ESCO1Q5FWF5 840 aa8.12□□□□□ -1.11
VPS13A-213ENST00000539950 SIRT1Q96EB6 747 aa8.12□□□□□ -1.11
VPS13A-213ENST00000539950 GMCL1Q96IK5 515 aa8.12□□□□□ -1.11
VPS13A-213ENST00000539950 ALG2Q9H553 416 aa8.12□□□□□ -1.11
VPS13A-213ENST00000539950 F11P03951 625 aa8.11□□□□□ -1.11
VPS13A-213ENST00000539950 SCNN1DP51172 638 aa8.11□□□□□ -1.11
VPS13A-213ENST00000539950 TMEM214Q6NUQ4 689 aaKnown RBP8.11□□□□□ -1.11
VPS13A-213ENST00000539950 GTPBP3Q969Y2 492 aaKnown RBP8.11□□□□□ -1.11
VPS13A-213ENST00000539950 H7C1W4 665 aa8.1□□□□□ -1.11
VPS13A-213ENST00000539950 ADAMTS2O95450 1211 aa8.1□□□□□ -1.11
VPS13A-213ENST00000539950 THBS1P07996 1170 aa8.1□□□□□ -1.11
VPS13A-213ENST00000539950 UBTFP17480 764 aaKnown RBP8.1□□□□□ -1.11
VPS13A-213ENST00000539950 FLIIQ13045 1269 aa8.1□□□□□ -1.11
VPS13A-213ENST00000539950 C4orf17Q53FE4 359 aa8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms