RNA–Protein interactions for RNA: ENST00000529540.5

NR1H3-231, Transcript of nuclear receptor subfamily 1 group H member 3, human

TSL 2

Gene NR1H3, Length 1,673 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NR1H3-231	ENST00000529540	AEBP1	Q8IUX7	1158 aa		18.92	■□□□□ 0.62
NR1H3-231	ENST00000529540	CCDC146	Q8IYE0	955 aa		18.92	■□□□□ 0.62
NR1H3-231	ENST00000529540	THRAP3	Q9Y2W1	955 aa	Known RBP	18.92	■□□□□ 0.62
NR1H3-231	ENST00000529540	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	18.92	■□□□□ 0.62
NR1H3-231	ENST00000529540	LARP1	Q6PKG0	1096 aa	Known RBP	18.91	■□□□□ 0.62
NR1H3-231	ENST00000529540	AMOT	Q4VCS5	1084 aa		18.9	■□□□□ 0.62
NR1H3-231	ENST00000529540	TCERG1	O14776	1098 aa	Known RBP	18.89	■□□□□ 0.61
NR1H3-231	ENST00000529540	TCP11L2	Q8N4U5	519 aa		18.89	■□□□□ 0.61
NR1H3-231	ENST00000529540	GAS2L2	Q8NHY3	880 aa		18.89	■□□□□ 0.61
NR1H3-231	ENST00000529540	CDCA7	Q9BWT1	371 aa	Predicted RBP	18.89	■□□□□ 0.61
NR1H3-231	ENST00000529540	USP21	Q9UK80	565 aa		18.89	■□□□□ 0.61
NR1H3-231	ENST00000529540	RGPD2	P0DJD1	1756 aa		18.89	■□□□□ 0.61
NR1H3-231	ENST00000529540	APAF1	O14727	1248 aa		18.89	■□□□□ 0.61
NR1H3-231	ENST00000529540	TAT	P17735	454 aa	Predicted RBP	18.89	■□□□□ 0.61
NR1H3-231	ENST00000529540	USHBP1	Q8N6Y0	703 aa		18.89	■□□□□ 0.61
NR1H3-231	ENST00000529540	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	18.89	■□□□□ 0.61
NR1H3-231	ENST00000529540	BCL9L	Q86UU0	1499 aa		18.88	■□□□□ 0.61
NR1H3-231	ENST00000529540	LMOD3	Q0VAK6	560 aa		18.88	■□□□□ 0.61
NR1H3-231	ENST00000529540	VPS72	Q15906	364 aa		18.88	■□□□□ 0.61
NR1H3-231	ENST00000529540	PLEKHO1	Q53GL0	409 aa	Predicted RBP	18.88	■□□□□ 0.61
NR1H3-231	ENST00000529540	ZBTB47	Q9UFB7	747 aa	Predicted RBP	18.87	■□□□□ 0.61
NR1H3-231	ENST00000529540	PARP4	Q9UKK3	1724 aa	Known RBP	18.86	■□□□□ 0.61
NR1H3-231	ENST00000529540	IL2RB	P14784	551 aa		18.86	■□□□□ 0.61
NR1H3-231	ENST00000529540	NFE2L2	Q16236	605 aa		18.86	■□□□□ 0.61
NR1H3-231	ENST00000529540	CCDC27	Q2M243	656 aa		18.86	■□□□□ 0.61
NR1H3-231	ENST00000529540	AFF2	P51816	1311 aa		18.86	■□□□□ 0.61
NR1H3-231	ENST00000529540	MS4A1	P11836	297 aa		18.85	■□□□□ 0.61
NR1H3-231	ENST00000529540	TMPO	P42166	694 aa	Known RBP	18.85	■□□□□ 0.61
NR1H3-231	ENST00000529540	RCAN3	Q9UKA8	241 aa		18.85	■□□□□ 0.61
NR1H3-231	ENST00000529540	SPG7	Q9UQ90	795 aa		18.85	■□□□□ 0.61
NR1H3-231	ENST00000529540	SPATA31A1	Q5TZJ5	1347 aa		18.85	■□□□□ 0.61
NR1H3-231	ENST00000529540	SPATA31A5	Q5VU36	1347 aa		18.85	■□□□□ 0.61
NR1H3-231	ENST00000529540	SPATA31A7	Q8IWB4	1347 aa		18.85	■□□□□ 0.61
NR1H3-231	ENST00000529540	OVOS2	A0A0G2JMS6	1433 aa		18.85	■□□□□ 0.61
NR1H3-231	ENST00000529540	PHACTR3	Q96KR7	559 aa		18.84	■□□□□ 0.61
NR1H3-231	ENST00000529540	TRPC5	Q9UL62	973 aa	Predicted RBP	18.84	■□□□□ 0.61
NR1H3-231	ENST00000529540	CCDC9	Q9Y3X0	531 aa	Known RBP	18.84	■□□□□ 0.61
NR1H3-231	ENST00000529540	ZNF772	Q68DY9	489 aa	Predicted RBP	18.83	■□□□□ 0.61
NR1H3-231	ENST00000529540	BARGIN	Q6ZT62	677 aa		18.83	■□□□□ 0.61
NR1H3-231	ENST00000529540	MEGF6	O75095	1541 aa		18.83	■□□□□ 0.6
NR1H3-231	ENST00000529540	HTATSF1	O43719	755 aa	Known RBP	18.82	■□□□□ 0.6
NR1H3-231	ENST00000529540	RIPK4	P57078	832 aa		18.82	■□□□□ 0.6
NR1H3-231	ENST00000529540	USP35	Q9P2H5	1018 aa		18.82	■□□□□ 0.6
NR1H3-231	ENST00000529540	CALD1	Q05682	793 aa	Known RBP	18.82	■□□□□ 0.6
NR1H3-231	ENST00000529540	EXOC6	Q8TAG9	804 aa		18.82	■□□□□ 0.6
NR1H3-231	ENST00000529540	NBR1	Q14596	966 aa		18.81	■□□□□ 0.6
NR1H3-231	ENST00000529540	MTHFSD	Q2M296	383 aa	Known RBP	18.81	■□□□□ 0.6
NR1H3-231	ENST00000529540	C1orf141	Q5JVX7	400 aa		18.81	■□□□□ 0.6
NR1H3-231	ENST00000529540	DISP2	A7MBM2	1401 aa		18.8	■□□□□ 0.6
NR1H3-231	ENST00000529540	ATRN	O75882	1429 aa		18.8	■□□□□ 0.6
NR1H3-231	ENST00000529540	PKD1L3	Q7Z443	1732 aa		18.8	■□□□□ 0.6
NR1H3-231	ENST00000529540	RTF1	Q92541	710 aa	Known RBP	18.8	■□□□□ 0.6
NR1H3-231	ENST00000529540	PCDH11X	Q9BZA7	1347 aa		18.8	■□□□□ 0.6
NR1H3-231	ENST00000529540	PCDH11Y	Q9BZA8	1340 aa		18.8	■□□□□ 0.6
NR1H3-231	ENST00000529540	NEUROD2	Q15784	382 aa		18.79	■□□□□ 0.6
NR1H3-231	ENST00000529540	AKAP4	Q5JQC9	854 aa		18.79	■□□□□ 0.6
NR1H3-231	ENST00000529540	PHF23	Q9BUL5	403 aa	Predicted RBP	18.79	■□□□□ 0.6
NR1H3-231	ENST00000529540	MAP3K5	Q99683	1374 aa		18.79	■□□□□ 0.6
NR1H3-231	ENST00000529540	WNK3	Q9BYP7	1800 aa		18.79	■□□□□ 0.6
NR1H3-231	ENST00000529540	GNAT3	A8MTJ3	354 aa		18.79	■□□□□ 0.6
NR1H3-231	ENST00000529540	HSP90AB1	P08238	724 aa	Known RBP	18.79	■□□□□ 0.6
NR1H3-231	ENST00000529540	RTL5	Q5HYW3	569 aa	Predicted RBP	18.79	■□□□□ 0.6
NR1H3-231	ENST00000529540	ZNF530	Q6P9A1	599 aa	Predicted RBP	18.79	■□□□□ 0.6
NR1H3-231	ENST00000529540	ZCRB1	Q8TBF4	217 aa	Known RBP	18.79	■□□□□ 0.6
NR1H3-231	ENST00000529540	WWC1	Q8IX03	1113 aa		18.78	■□□□□ 0.6
NR1H3-231	ENST00000529540	GJD4	Q96KN9	370 aa	Predicted RBP	18.78	■□□□□ 0.6
NR1H3-231	ENST00000529540	RRP7A	Q9Y3A4	280 aa	Known RBP	18.78	■□□□□ 0.6
NR1H3-231	ENST00000529540	WDR63	Q8IWG1	891 aa		18.77	■□□□□ 0.6
NR1H3-231	ENST00000529540	IFNL2	Q8IZJ0	200 aa		18.77	■□□□□ 0.6
NR1H3-231	ENST00000529540	ZNF521	Q96K83	1311 aa		18.77	■□□□□ 0.59
NR1H3-231	ENST00000529540	TNS2	Q63HR2	1409 aa		18.76	■□□□□ 0.59
NR1H3-231	ENST00000529540	EXOC5	O00471	708 aa		18.76	■□□□□ 0.59
NR1H3-231	ENST00000529540	PDE4A	P27815	886 aa		18.76	■□□□□ 0.59
NR1H3-231	ENST00000529540	BACH2	Q9BYV9	841 aa		18.76	■□□□□ 0.59
NR1H3-231	ENST00000529540	SALL2	Q9Y467	1007 aa	Predicted RBP	18.76	■□□□□ 0.59
NR1H3-231	ENST00000529540	GOLGA2	Q08379	1002 aa		18.75	■□□□□ 0.59
NR1H3-231	ENST00000529540	QTRT2	Q9H974	415 aa	Known RBP	18.75	■□□□□ 0.59
NR1H3-231	ENST00000529540	TRIM35	Q9UPQ4	493 aa		18.75	■□□□□ 0.59
NR1H3-231	ENST00000529540	IL16	Q14005	1332 aa		18.74	■□□□□ 0.59
NR1H3-231	ENST00000529540	DDB1	Q16531	1140 aa		18.74	■□□□□ 0.59
NR1H3-231	ENST00000529540	PHKG2	P15735	406 aa		18.73	■□□□□ 0.59
NR1H3-231	ENST00000529540	DLG5	Q8TDM6	1919 aa		18.73	■□□□□ 0.59
NR1H3-231	ENST00000529540		E9PSI1	815 aa		18.72	■□□□□ 0.59
NR1H3-231	ENST00000529540	DCAF5	Q96JK2	942 aa		18.72	■□□□□ 0.59
NR1H3-231	ENST00000529540	GLI3	P10071	1580 aa		18.71	■□□□□ 0.59
NR1H3-231	ENST00000529540	ONECUT3	O60422	494 aa	Predicted RBP	18.71	■□□□□ 0.59
NR1H3-231	ENST00000529540	FAM98C	Q17RN3	349 aa	Known RBP	18.71	■□□□□ 0.59
NR1H3-231	ENST00000529540	SENP3-EIF4A1	A0A087X0R7	540 aa		18.7	■□□□□ 0.58
NR1H3-231	ENST00000529540	RBM6	P78332	1123 aa	Known RBP	18.7	■□□□□ 0.58
NR1H3-231	ENST00000529540	MYH16	Q9H6N6	1097 aa		18.7	■□□□□ 0.58
NR1H3-231	ENST00000529540	LRRC37A3	O60309	1634 aa		18.7	■□□□□ 0.58
NR1H3-231	ENST00000529540	THSD7A	Q9UPZ6	1657 aa		18.7	■□□□□ 0.58
NR1H3-231	ENST00000529540	CEMIP	Q8WUJ3	1361 aa		18.7	■□□□□ 0.58
NR1H3-231	ENST00000529540	CYP27B1	O15528	508 aa		18.69	■□□□□ 0.58
NR1H3-231	ENST00000529540	NKX1-1	Q15270	411 aa	Predicted RBP	18.69	■□□□□ 0.58
NR1H3-231	ENST00000529540	GNAI1	P63096	354 aa		18.69	■□□□□ 0.58
NR1H3-231	ENST00000529540	ILDR1	Q86SU0	546 aa	Predicted RBP	18.69	■□□□□ 0.58
NR1H3-231	ENST00000529540	BABAM1	Q9NWV8	329 aa		18.69	■□□□□ 0.58
NR1H3-231	ENST00000529540	ADAMTS7	Q9UKP4	1686 aa		18.68	■□□□□ 0.58
NR1H3-231	ENST00000529540		A0A0G2JS52	829 aa		18.68	■□□□□ 0.58

Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms