RNA–Protein interactions for RNA: ENST00000529182.5

VPS28-210, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2 BASIC

Gene VPS28, Length 1,010 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-210ENST00000529182 SHANK3Q9BYB0 1731 aa18.05■□□□□ 0.48
VPS28-210ENST00000529182 COL3A1P02461 1466 aaPredicted RBP18.05■□□□□ 0.48
VPS28-210ENST00000529182 PARD3Q8TEW0 1356 aa18.04■□□□□ 0.48
VPS28-210ENST00000529182 RGPD1P0DJD0 1748 aa18.04■□□□□ 0.48
VPS28-210ENST00000529182 TNS1Q9HBL0 1735 aaKnown RBP18.04■□□□□ 0.48
VPS28-210ENST00000529182 DIAPH1O60610 1272 aaKnown RBP18.04■□□□□ 0.48
VPS28-210ENST00000529182 ACSBG1Q96GR2 724 aa18.04■□□□□ 0.48
VPS28-210ENST00000529182 SULT6B1Q6IMI4 303 aa18.03■□□□□ 0.48
VPS28-210ENST00000529182 BCL9O00512 1426 aa18.03■□□□□ 0.48
VPS28-210ENST00000529182 KCNQ2O43526 872 aa18.02■□□□□ 0.48
VPS28-210ENST00000529182 APBA3O96018 575 aa18.02■□□□□ 0.48
VPS28-210ENST00000529182 BAG6P46379 1132 aa18.02■□□□□ 0.48
VPS28-210ENST00000529182 EN1Q05925 392 aaPredicted RBP18.02■□□□□ 0.48
VPS28-210ENST00000529182 SBF2Q86WG5 1849 aa18.02■□□□□ 0.47
VPS28-210ENST00000529182 HMOX1P09601 288 aa18.01■□□□□ 0.47
VPS28-210ENST00000529182 PCDH11XQ9BZA7 1347 aa18■□□□□ 0.47
VPS28-210ENST00000529182 PCDH11YQ9BZA8 1340 aa18■□□□□ 0.47
VPS28-210ENST00000529182 CYP27B1O15528 508 aa18■□□□□ 0.47
VPS28-210ENST00000529182 BCL11BQ9C0K0 894 aaPredicted RBP18■□□□□ 0.47
VPS28-210ENST00000529182 PKD1L3Q7Z443 1732 aa18■□□□□ 0.47
VPS28-210ENST00000529182 U2SURPO15042 1029 aaKnown RBP17.99■□□□□ 0.47
VPS28-210ENST00000529182 CFAP53Q96M91 514 aa17.99■□□□□ 0.47
VPS28-210ENST00000529182 SPG7Q9UQ90 795 aa17.99■□□□□ 0.47
VPS28-210ENST00000529182 KDRP35968 1356 aa17.99■□□□□ 0.47
VPS28-210ENST00000529182 RALBP1Q15311 655 aa17.98■□□□□ 0.47
VPS28-210ENST00000529182 EZH2Q15910 746 aaKnown RBP17.98■□□□□ 0.47
VPS28-210ENST00000529182 NHSQ6T4R5 1651 aa17.97■□□□□ 0.47
VPS28-210ENST00000529182 CAMKK2Q96RR4 588 aa17.97■□□□□ 0.47
VPS28-210ENST00000529182 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.97■□□□□ 0.47
VPS28-210ENST00000529182 PRIM1P49642 420 aaKnown RBP17.96■□□□□ 0.47
VPS28-210ENST00000529182 SYTL4Q96C24 671 aaPredicted RBP17.96■□□□□ 0.47
VPS28-210ENST00000529182 DOT1LQ8TEK3 1739 aa17.95■□□□□ 0.46
VPS28-210ENST00000529182 PLEKHO1Q53GL0 409 aaPredicted RBP17.95■□□□□ 0.46
VPS28-210ENST00000529182 KAT6BQ8WYB5 2073 aa17.94■□□□□ 0.46
VPS28-210ENST00000529182 PHKG2P15735 406 aa17.94■□□□□ 0.46
VPS28-210ENST00000529182 PLEKHG2Q9H7P9 1386 aa17.93■□□□□ 0.46
VPS28-210ENST00000529182 ZNF530Q6P9A1 599 aaPredicted RBP17.93■□□□□ 0.46
VPS28-210ENST00000529182 IFNL2Q8IZJ0 200 aa17.93■□□□□ 0.46
VPS28-210ENST00000529182 PRKRIP1Q9H875 184 aaPredicted RBP17.93■□□□□ 0.46
VPS28-210ENST00000529182 AMOTQ4VCS5 1084 aa17.92■□□□□ 0.46
VPS28-210ENST00000529182 NUDCQ9Y266 331 aa17.92■□□□□ 0.46
VPS28-210ENST00000529182 MYBBP1AQ9BQG0 1328 aaKnown RBP17.92■□□□□ 0.46
VPS28-210ENST00000529182 U2AF1L5P0DN76 240 aaPredicted RBP17.91■□□□□ 0.46
VPS28-210ENST00000529182 U2AF1Q01081 240 aaKnown RBP eCLIP17.91■□□□□ 0.46
VPS28-210ENST00000529182 NKX1-1Q15270 411 aaPredicted RBP17.91■□□□□ 0.46
VPS28-210ENST00000529182 TOGARAM1Q9Y4F4 1720 aa17.91■□□□□ 0.46
VPS28-210ENST00000529182 BTAF1O14981 1849 aa17.91■□□□□ 0.46
VPS28-210ENST00000529182 PLSCR1O15162 318 aa17.9■□□□□ 0.46
VPS28-210ENST00000529182 MPRIPQ6WCQ1 1025 aa17.89■□□□□ 0.45
VPS28-210ENST00000529182 PROM2Q8N271 834 aa17.89■□□□□ 0.45
VPS28-210ENST00000529182 RSPH6AQ9H0K4 717 aa17.89■□□□□ 0.45
VPS28-210ENST00000529182 RREB1Q92766 1687 aa17.88■□□□□ 0.45
VPS28-210ENST00000529182 PRKAR2BP31323 418 aa17.88■□□□□ 0.45
VPS28-210ENST00000529182 MTHFSDQ2M296 383 aaKnown RBP17.88■□□□□ 0.45
VPS28-210ENST00000529182 TXNRD1Q16881 649 aa17.87■□□□□ 0.45
VPS28-210ENST00000529182 C1orf141Q5JVX7 400 aa17.87■□□□□ 0.45
VPS28-210ENST00000529182 KDM6AO15550 1401 aaPredicted RBP17.87■□□□□ 0.45
VPS28-210ENST00000529182 PHACTR3Q96KR7 559 aa17.86■□□□□ 0.45
VPS28-210ENST00000529182 RGPD3A6NKT7 1758 aaPredicted RBP17.86■□□□□ 0.45
VPS28-210ENST00000529182 RGPD4Q7Z3J3 1758 aa17.86■□□□□ 0.45
VPS28-210ENST00000529182 HSP90AB1P08238 724 aaKnown RBP17.85■□□□□ 0.45
VPS28-210ENST00000529182 NUP188Q5SRE5 1749 aa17.85■□□□□ 0.45
VPS28-210ENST00000529182 PIGBQ92521 554 aa17.85■□□□□ 0.45
VPS28-210ENST00000529182 DCAF5Q96JK2 942 aa17.85■□□□□ 0.45
VPS28-210ENST00000529182 FCHSD2O94868 740 aa17.84■□□□□ 0.45
VPS28-210ENST00000529182 AKAP4Q5JQC9 854 aa17.84■□□□□ 0.45
VPS28-210ENST00000529182 ITGB4P16144 1822 aa17.84■□□□□ 0.45
VPS28-210ENST00000529182 PSDA5PKW4 1024 aaPredicted RBP17.83■□□□□ 0.44
VPS28-210ENST00000529182 KCNQ4P56696 695 aa17.83■□□□□ 0.44
VPS28-210ENST00000529182 TMOD3Q9NYL9 352 aa17.83■□□□□ 0.44
VPS28-210ENST00000529182 LGR6Q9HBX8 967 aa17.82■□□□□ 0.44
VPS28-210ENST00000529182 ANO8Q9HCE9 1232 aaPredicted RBP17.82■□□□□ 0.44
VPS28-210ENST00000529182 LRRC4BQ9NT99 713 aa17.82■□□□□ 0.44
VPS28-210ENST00000529182 ERVV-2B6SEH9 535 aa17.81■□□□□ 0.44
VPS28-210ENST00000529182 CABP4P57796 275 aa17.81■□□□□ 0.44
VPS28-210ENST00000529182 R3HDM1Q15032 1099 aaKnown RBP17.81■□□□□ 0.44
VPS28-210ENST00000529182 PALLDQ8WX93 1383 aa17.8■□□□□ 0.44
VPS28-210ENST00000529182 SRCAPQ6ZRS2 3230 aa17.8■□□□□ 0.44
VPS28-210ENST00000529182 RNMTO43148 476 aaKnown RBP17.8■□□□□ 0.44
VPS28-210ENST00000529182 ANP32CO43423 234 aa17.8■□□□□ 0.44
VPS28-210ENST00000529182 GAS2L2Q8NHY3 880 aa17.8■□□□□ 0.44
VPS28-210ENST00000529182 ASAP1Q9ULH1 1129 aa17.8■□□□□ 0.44
VPS28-210ENST00000529182 CCDC184Q52MB2 194 aa17.79■□□□□ 0.44
VPS28-210ENST00000529182 NBPF14Q5TI25 921 aa17.79■□□□□ 0.44
VPS28-210ENST00000529182 MAP3K5Q99683 1374 aa17.79■□□□□ 0.44
VPS28-210ENST00000529182 NFATC2IPQ8NCF5 419 aa17.78■□□□□ 0.44
VPS28-210ENST00000529182 PLEKHF1Q96S99 279 aa17.78■□□□□ 0.44
VPS28-210ENST00000529182 CCNL1Q9UK58 526 aaPredicted RBP17.78■□□□□ 0.44
VPS28-210ENST00000529182 LY75O60449 1722 aa17.78■□□□□ 0.44
VPS28-210ENST00000529182 SCN11AQ9UI33 1791 aa17.77■□□□□ 0.44
VPS28-210ENST00000529182 GNAT3A8MTJ3 354 aa17.77■□□□□ 0.44
VPS28-210ENST00000529182 SLC27A3Q5K4L6 730 aa17.77■□□□□ 0.44
VPS28-210ENST00000529182 ATG3Q9NT62 314 aa17.77■□□□□ 0.44
VPS28-210ENST00000529182 IL17REQ8NFR9 667 aa17.76■□□□□ 0.43
VPS28-210ENST00000529182 SMARCC1Q92922 1105 aaPredicted RBP17.76■□□□□ 0.43
VPS28-210ENST00000529182 SLC52A2Q9HAB3 445 aa17.76■□□□□ 0.43
VPS28-210ENST00000529182 PAPPAQ13219 1627 aa17.76■□□□□ 0.43
VPS28-210ENST00000529182 WDR43Q15061 677 aaKnown RBP eCLIP17.75■□□□□ 0.43
VPS28-210ENST00000529182 ZNF827Q17R98 1081 aa17.75■□□□□ 0.43
VPS28-210ENST00000529182 ADAMTS7Q9UKP4 1686 aa17.74■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms