RNA–Protein interactions for RNA: ENST00000524330.1

VPS13B-212, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

TSL 5

Gene VPS13B, Length 218 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-212ENST00000524330 MBIPQ9NS73 344 aa12.75□□□□□ -0.37
VPS13B-212ENST00000524330 CPDO75976 1380 aa12.74□□□□□ -0.37
VPS13B-212ENST00000524330 CSB-PGBD3P0DP91 1061 aa12.74□□□□□ -0.37
VPS13B-212ENST00000524330 ZC3H6P61129 1189 aaKnown RBP12.74□□□□□ -0.37
VPS13B-212ENST00000524330 RAPGEF4Q8WZA2 1011 aa12.74□□□□□ -0.37
VPS13B-212ENST00000524330 ARHGAP45Q92619 1136 aa12.74□□□□□ -0.37
VPS13B-212ENST00000524330 FAM208AQ9UK61 1670 aaKnown RBP12.73□□□□□ -0.37
VPS13B-212ENST00000524330 PLEKHG5O94827 1062 aa12.73□□□□□ -0.37
VPS13B-212ENST00000524330 AKAP4Q5JQC9 854 aa12.73□□□□□ -0.37
VPS13B-212ENST00000524330 NBPF6Q5VWK0 638 aa12.73□□□□□ -0.37
VPS13B-212ENST00000524330 CENPQQ7L2Z9 268 aaPredicted RBP12.73□□□□□ -0.37
VPS13B-212ENST00000524330 NBPF4Q96M43 638 aa12.73□□□□□ -0.37
VPS13B-212ENST00000524330 THUMPD2Q9BTF0 503 aaKnown RBP12.73□□□□□ -0.37
VPS13B-212ENST00000524330 API5Q9BZZ5 524 aaKnown RBP12.73□□□□□ -0.37
VPS13B-212ENST00000524330 TSPYL4Q9UJ04 414 aa12.73□□□□□ -0.37
VPS13B-212ENST00000524330 NCAPD2Q15021 1401 aa12.72□□□□□ -0.37
VPS13B-212ENST00000524330 FAM83GA6ND36 823 aa12.72□□□□□ -0.37
VPS13B-212ENST00000524330 VAMP4O75379 141 aa12.72□□□□□ -0.37
VPS13B-212ENST00000524330 TATP17735 454 aaPredicted RBP12.72□□□□□ -0.37
VPS13B-212ENST00000524330 ATF7IPQ6VMQ6 1270 aa12.72□□□□□ -0.37
VPS13B-212ENST00000524330 MCM10Q7L590 875 aa12.72□□□□□ -0.37
VPS13B-212ENST00000524330 SSH1Q8WYL5 1049 aa12.72□□□□□ -0.37
VPS13B-212ENST00000524330 DDX19BQ9UMR2 479 aa12.72□□□□□ -0.37
VPS13B-212ENST00000524330 ERBB3P21860 1342 aa12.71□□□□□ -0.37
VPS13B-212ENST00000524330 DCTN1Q14203 1278 aa12.71□□□□□ -0.37
VPS13B-212ENST00000524330 TAF7Q15545 349 aaPredicted RBP12.71□□□□□ -0.37
VPS13B-212ENST00000524330 C20orf194Q5TEA3 1177 aa12.71□□□□□ -0.37
VPS13B-212ENST00000524330 ZNF530Q6P9A1 599 aaPredicted RBP12.71□□□□□ -0.37
VPS13B-212ENST00000524330 BCL2L13Q9BXK5 485 aa12.71□□□□□ -0.37
VPS13B-212ENST00000524330 NLRP2Q9NX02 1062 aa12.71□□□□□ -0.37
VPS13B-212ENST00000524330 SPG7Q9UQ90 795 aa12.71□□□□□ -0.37
VPS13B-212ENST00000524330 CRB1P82279 1406 aa12.71□□□□□ -0.38
VPS13B-212ENST00000524330 TEFQ10587 303 aa12.7□□□□□ -0.38
VPS13B-212ENST00000524330 MVPQ14764 893 aaKnown RBP12.7□□□□□ -0.38
VPS13B-212ENST00000524330 USHBP1Q8N6Y0 703 aa12.7□□□□□ -0.38
VPS13B-212ENST00000524330 DDX17Q92841 729 aaKnown RBP12.7□□□□□ -0.38
VPS13B-212ENST00000524330 LRRC59Q96AG4 307 aaKnown RBP12.7□□□□□ -0.38
VPS13B-212ENST00000524330 CLUAP1Q96AJ1 413 aa12.7□□□□□ -0.38
VPS13B-212ENST00000524330 PRDM11Q9NQV5 511 aa12.7□□□□□ -0.38
VPS13B-212ENST00000524330 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.7□□□□□ -0.382e-7■■■■□ 23.6
VPS13B-212ENST00000524330 OVOS2A0A0G2JMS6 1433 aa12.7□□□□□ -0.38
VPS13B-212ENST00000524330 NHSL1Q5SYE7 1610 aa12.7□□□□□ -0.38
VPS13B-212ENST00000524330 HSP90AB1P08238 724 aaKnown RBP12.69□□□□□ -0.38
VPS13B-212ENST00000524330 PANK1Q8TE04 598 aa12.69□□□□□ -0.38
VPS13B-212ENST00000524330 STK31Q9BXU1 1019 aa12.69□□□□□ -0.38
VPS13B-212ENST00000524330 NOB1Q9ULX3 412 aaKnown RBP12.69□□□□□ -0.38
VPS13B-212ENST00000524330 COG6Q9Y2V7 657 aa12.69□□□□□ -0.38
VPS13B-212ENST00000524330 CAMTA1Q9Y6Y1 1673 aa12.69□□□□□ -0.38
VPS13B-212ENST00000524330 MRPL50Q8N5N7 158 aaKnown RBP12.68□□□□□ -0.38
VPS13B-212ENST00000524330 RWDD1Q9H446 243 aaPredicted RBP12.68□□□□□ -0.38
VPS13B-212ENST00000524330 PTPRCP08575 1304 aa12.67□□□□□ -0.38
VPS13B-212ENST00000524330 TCERG1O14776 1098 aaKnown RBP12.67□□□□□ -0.38
VPS13B-212ENST00000524330 ITPRIPQ8IWB1 547 aa12.67□□□□□ -0.38
VPS13B-212ENST00000524330 C8orf58Q8NAV2 365 aa12.67□□□□□ -0.38
VPS13B-212ENST00000524330 LRRC37A3O60309 1634 aa12.66□□□□□ -0.38
VPS13B-212ENST00000524330 TOM1O60784 492 aa12.66□□□□□ -0.38
VPS13B-212ENST00000524330 HOXB7P09629 217 aa12.66□□□□□ -0.38
VPS13B-212ENST00000524330 TRIM27P14373 513 aa12.66□□□□□ -0.38
VPS13B-212ENST00000524330 EVA1CP58658 441 aa12.66□□□□□ -0.38
VPS13B-212ENST00000524330 CCDC30Q5VVM6 783 aa12.66□□□□□ -0.38
VPS13B-212ENST00000524330 CABLES1Q8TDN4 633 aa12.66□□□□□ -0.38
VPS13B-212ENST00000524330 AXIN2Q9Y2T1 843 aa12.66□□□□□ -0.38
VPS13B-212ENST00000524330 LMO7Q8WWI1 1683 aa12.66□□□□□ -0.38
VPS13B-212ENST00000524330 CRYBG1Q9Y4K1 1723 aa12.65□□□□□ -0.38
VPS13B-212ENST00000524330 ELL2O00472 640 aaPredicted RBP12.65□□□□□ -0.38
VPS13B-212ENST00000524330 COL18A1P39060 1754 aa12.64□□□□□ -0.39
VPS13B-212ENST00000524330 TOM1L2Q6ZVM7 507 aa12.64□□□□□ -0.39
VPS13B-212ENST00000524330 IFNL2Q8IZJ0 200 aa12.64□□□□□ -0.39
VPS13B-212ENST00000524330 TSPYL6Q8N831 410 aa12.64□□□□□ -0.39
VPS13B-212ENST00000524330 IL17REQ8NFR9 667 aa12.64□□□□□ -0.39
VPS13B-212ENST00000524330 CEMIPQ8WUJ3 1361 aa12.64□□□□□ -0.39
VPS13B-212ENST00000524330 RGPD2P0DJD1 1756 aa12.64□□□□□ -0.39
VPS13B-212ENST00000524330 RGPD5Q99666 1765 aa12.64□□□□□ -0.39
VPS13B-212ENST00000524330 WDR17Q8IZU2 1322 aa12.63□□□□□ -0.39
VPS13B-212ENST00000524330 AHDC1Q5TGY3 1603 aaPredicted RBP12.63□□□□□ -0.39
VPS13B-212ENST00000524330 BTBD11A6QL63 1104 aa12.63□□□□□ -0.39
VPS13B-212ENST00000524330 RNMTO43148 476 aaKnown RBP12.63□□□□□ -0.39
VPS13B-212ENST00000524330 CHRNA2Q15822 529 aa12.63□□□□□ -0.39
VPS13B-212ENST00000524330 LTBP4Q8N2S1 1624 aa12.62□□□□□ -0.39
VPS13B-212ENST00000524330 TMEM57Q8N5G2 664 aa12.61□□□□□ -0.39
VPS13B-212ENST00000524330 CARD10Q9BWT7 1032 aa12.61□□□□□ -0.39
VPS13B-212ENST00000524330 TSHZ2Q9NRE2 1034 aa12.61□□□□□ -0.39
VPS13B-212ENST00000524330 KDM2BQ8NHM5 1336 aa12.61□□□□□ -0.39
VPS13B-212ENST00000524330 ROBO1Q9Y6N7 1651 aa12.61□□□□□ -0.39
VPS13B-212ENST00000524330 CACNA1FO60840 1977 aa12.6□□□□□ -0.39
VPS13B-212ENST00000524330 SLC4A2P04920 1241 aa12.6□□□□□ -0.39
VPS13B-212ENST00000524330 RLBP1P12271 317 aa12.6□□□□□ -0.39
VPS13B-212ENST00000524330 MPRIPQ6WCQ1 1025 aa12.6□□□□□ -0.39
VPS13B-212ENST00000524330 DCAF5Q96JK2 942 aa12.6□□□□□ -0.39
VPS13B-212ENST00000524330 MIS18AQ9NYP9 233 aa12.6□□□□□ -0.39
VPS13B-212ENST00000524330 ABCC4O15439 1325 aa12.6□□□□□ -0.39
VPS13B-212ENST00000524330 PCDH11XQ9BZA7 1347 aa12.6□□□□□ -0.39
VPS13B-212ENST00000524330 PCDH11YQ9BZA8 1340 aa12.6□□□□□ -0.39
VPS13B-212ENST00000524330 PARP4Q9UKK3 1724 aaKnown RBP12.59□□□□□ -0.39
VPS13B-212ENST00000524330 CCT4P50991 539 aaKnown RBP12.59□□□□□ -0.39
VPS13B-212ENST00000524330 ABCA3Q99758 1704 aa12.59□□□□□ -0.39
VPS13B-212ENST00000524330 COL5A2P05997 1499 aaPredicted RBP12.59□□□□□ -0.39
VPS13B-212ENST00000524330 IL2RBP14784 551 aa12.58□□□□□ -0.4
VPS13B-212ENST00000524330 PHKG2P15735 406 aa12.58□□□□□ -0.4
VPS13B-212ENST00000524330 HDGFL1Q5TGJ6 251 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms