RNA–Protein interactions for RNA: ENST00000513578.5

RNF4-220, Transcript of ring finger protein 4, humanhuman

TSL 4

Gene RNF4, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-220ENST00000513578 VAMP4O75379 141 aa10.76□□□□□ -0.69
RNF4-220ENST00000513578 SSH1Q8WYL5 1049 aa10.76□□□□□ -0.69
RNF4-220ENST00000513578 ARHGAP45Q92619 1136 aa10.76□□□□□ -0.69
RNF4-220ENST00000513578 MBIPQ9NS73 344 aa10.76□□□□□ -0.69
RNF4-220ENST00000513578 SPATA31A3Q5VYP0 1347 aa10.76□□□□□ -0.69
RNF4-220ENST00000513578 KDM2BQ8NHM5 1336 aa10.76□□□□□ -0.69
RNF4-220ENST00000513578 IPO8O15397 1037 aaKnown RBP10.75□□□□□ -0.69
RNF4-220ENST00000513578 SOS1Q07889 1333 aaPredicted RBP10.75□□□□□ -0.69
RNF4-220ENST00000513578 SOS2Q07890 1332 aaPredicted RBP10.75□□□□□ -0.69
RNF4-220ENST00000513578 ZNF335Q9H4Z2 1342 aaPredicted RBP10.75□□□□□ -0.69
RNF4-220ENST00000513578 ADAMTS7Q9UKP4 1686 aa10.75□□□□□ -0.69
RNF4-220ENST00000513578 CPDO75976 1380 aa10.75□□□□□ -0.69
RNF4-220ENST00000513578 OVOS2A0A0G2JMS6 1433 aa10.75□□□□□ -0.69
RNF4-220ENST00000513578 FAM83GA6ND36 823 aa10.74□□□□□ -0.69
RNF4-220ENST00000513578 CANXP27824 592 aaKnown RBP10.74□□□□□ -0.69
RNF4-220ENST00000513578 HSPA1LP34931 641 aa10.74□□□□□ -0.69
RNF4-220ENST00000513578 BRINP3Q76B58 766 aa10.74□□□□□ -0.69
RNF4-220ENST00000513578 CENPQQ7L2Z9 268 aaPredicted RBP10.74□□□□□ -0.69
RNF4-220ENST00000513578 RTF1Q92541 710 aaKnown RBP10.74□□□□□ -0.69
RNF4-220ENST00000513578 THUMPD2Q9BTF0 503 aaKnown RBP10.74□□□□□ -0.69
RNF4-220ENST00000513578 SMC4Q9NTJ3 1288 aa10.74□□□□□ -0.69
RNF4-220ENST00000513578 ABCA3Q99758 1704 aa10.74□□□□□ -0.69
RNF4-220ENST00000513578 MAP3K5Q99683 1374 aa10.74□□□□□ -0.69
RNF4-220ENST00000513578 KDM3BQ7LBC6 1761 aa10.73□□□□□ -0.69
RNF4-220ENST00000513578 GNAT3A8MTJ3 354 aa10.73□□□□□ -0.69
RNF4-220ENST00000513578 XPCQ01831 940 aaPredicted RBP10.73□□□□□ -0.69
RNF4-220ENST00000513578 TWISTNBQ3B726 338 aaPredicted RBP10.73□□□□□ -0.69
RNF4-220ENST00000513578 NBPF6Q5VWK0 638 aa10.73□□□□□ -0.69
RNF4-220ENST00000513578 ATF7IPQ6VMQ6 1270 aa10.73□□□□□ -0.69
RNF4-220ENST00000513578 DZIP1LQ8IYY4 767 aaKnown RBP10.73□□□□□ -0.69
RNF4-220ENST00000513578 MRPL50Q8N5N7 158 aaKnown RBP10.73□□□□□ -0.69
RNF4-220ENST00000513578 NBPF4Q96M43 638 aa10.73□□□□□ -0.69
RNF4-220ENST00000513578 SLAIN2Q9P270 581 aa10.73□□□□□ -0.69
RNF4-220ENST00000513578 LTBP4Q8N2S1 1624 aa10.73□□□□□ -0.69
RNF4-220ENST00000513578 DCTN1Q14203 1278 aa10.72□□□□□ -0.69
RNF4-220ENST00000513578 MVPQ14764 893 aaKnown RBP10.72□□□□□ -0.69
RNF4-220ENST00000513578 AMOTQ4VCS5 1084 aa10.72□□□□□ -0.69
RNF4-220ENST00000513578 IFFO2Q5TF58 517 aa10.72□□□□□ -0.69
RNF4-220ENST00000513578 PANK1Q8TE04 598 aa10.72□□□□□ -0.69
RNF4-220ENST00000513578 FRAT1Q92837 279 aaPredicted RBP10.72□□□□□ -0.69
RNF4-220ENST00000513578 CLUAP1Q96AJ1 413 aa10.72□□□□□ -0.69
RNF4-220ENST00000513578 CEMIPQ8WUJ3 1361 aa10.72□□□□□ -0.69
RNF4-220ENST00000513578 SIPA1L3O60292 1781 aaPredicted RBP10.72□□□□□ -0.69
RNF4-220ENST00000513578 RLBP1P12271 317 aa10.71□□□□□ -0.69
RNF4-220ENST00000513578 SRCAPQ6ZRS2 3230 aa10.71□□□□□ -0.69
RNF4-220ENST00000513578 MCM10Q7L590 875 aa10.71□□□□□ -0.69
RNF4-220ENST00000513578 C8orf58Q8NAV2 365 aa10.71□□□□□ -0.69
RNF4-220ENST00000513578 ANKRD24Q8TF21 1146 aa10.71□□□□□ -0.69
RNF4-220ENST00000513578 COG6Q9Y2V7 657 aa10.71□□□□□ -0.69
RNF4-220ENST00000513578 LAS1LQ9Y4W2 734 aaKnown RBP10.71□□□□□ -0.69
RNF4-220ENST00000513578 PKD1L3Q7Z443 1732 aa10.7□□□□□ -0.7
RNF4-220ENST00000513578 ERBB3P21860 1342 aa10.7□□□□□ -0.7
RNF4-220ENST00000513578 TCERG1O14776 1098 aaKnown RBP10.7□□□□□ -0.7
RNF4-220ENST00000513578 TRIM27P14373 513 aa10.7□□□□□ -0.7
RNF4-220ENST00000513578 PLEKHO1Q53GL0 409 aaPredicted RBP10.7□□□□□ -0.7
RNF4-220ENST00000513578 LMOD2Q6P5Q4 547 aa10.7□□□□□ -0.7
RNF4-220ENST00000513578 PPP4R3CPQ6ZMV5 832 aa10.7□□□□□ -0.7
RNF4-220ENST00000513578 TSPYL6Q8N831 410 aa10.7□□□□□ -0.7
RNF4-220ENST00000513578 LTV1Q96GA3 475 aaPredicted RBP10.7□□□□□ -0.7
RNF4-220ENST00000513578 BCL2L13Q9BXK5 485 aa10.7□□□□□ -0.7
RNF4-220ENST00000513578 CHMP4BQ9H444 224 aaKnown RBP10.7□□□□□ -0.7
RNF4-220ENST00000513578 NOB1Q9ULX3 412 aaKnown RBP10.7□□□□□ -0.7
RNF4-220ENST00000513578 DDX19BQ9UMR2 479 aa10.7□□□□□ -0.7
RNF4-220ENST00000513578 SCN11AQ9UI33 1791 aa10.7□□□□□ -0.7
RNF4-220ENST00000513578 AKAP4Q5JQC9 854 aa10.69□□□□□ -0.7
RNF4-220ENST00000513578 IL17REQ8NFR9 667 aa10.69□□□□□ -0.7
RNF4-220ENST00000513578 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.69□□□□□ -0.7
RNF4-220ENST00000513578 AXIN2Q9Y2T1 843 aa10.69□□□□□ -0.7
RNF4-220ENST00000513578 N4BP2Q86UW6 1770 aaPredicted RBP10.69□□□□□ -0.7
RNF4-220ENST00000513578 TAF7Q15545 349 aaPredicted RBP10.68□□□□□ -0.7
RNF4-220ENST00000513578 FTSJ3Q8IY81 847 aaKnown RBP10.68□□□□□ -0.7
RNF4-220ENST00000513578 API5Q9BZZ5 524 aaKnown RBP10.68□□□□□ -0.7
RNF4-220ENST00000513578 AHDC1Q5TGY3 1603 aaPredicted RBP10.68□□□□□ -0.7
RNF4-220ENST00000513578 COL22A1Q8NFW1 1626 aaPredicted RBP10.68□□□□□ -0.7
RNF4-220ENST00000513578 PARP4Q9UKK3 1724 aaKnown RBP10.67□□□□□ -0.7
RNF4-220ENST00000513578 ABCC4O15439 1325 aa10.67□□□□□ -0.7
RNF4-220ENST00000513578 DDX17Q92841 729 aaKnown RBP10.67□□□□□ -0.7
RNF4-220ENST00000513578 LRRC59Q96AG4 307 aaKnown RBP10.67□□□□□ -0.7
RNF4-220ENST00000513578 CHMP4AQ9BY43 222 aa10.67□□□□□ -0.7
RNF4-220ENST00000513578 TSPYL4Q9UJ04 414 aa10.67□□□□□ -0.7
RNF4-220ENST00000513578 TNNQ9UQP3 1299 aa10.67□□□□□ -0.7
RNF4-220ENST00000513578 PTPRCP08575 1304 aa10.66□□□□□ -0.7
RNF4-220ENST00000513578 ZC3H6P61129 1189 aaKnown RBP10.66□□□□□ -0.7
RNF4-220ENST00000513578 USHBP1Q8N6Y0 703 aa10.66□□□□□ -0.7
RNF4-220ENST00000513578 HOXB7P09629 217 aa10.65□□□□□ -0.7
RNF4-220ENST00000513578 HDAC1Q13547 482 aaPredicted RBP10.65□□□□□ -0.7
RNF4-220ENST00000513578 TMEM57Q8N5G2 664 aa10.65□□□□□ -0.7
RNF4-220ENST00000513578 RWDD1Q9H446 243 aaPredicted RBP10.65□□□□□ -0.7
RNF4-220ENST00000513578 ZBTB40Q9NUA8 1239 aa10.65□□□□□ -0.7
RNF4-220ENST00000513578 RBM19Q9Y4C8 960 aaKnown RBP10.65□□□□□ -0.7
RNF4-220ENST00000513578 ROBO1Q9Y6N7 1651 aa10.64□□□□□ -0.71
RNF4-220ENST00000513578 ZBTB7CA1YPR0 619 aa10.64□□□□□ -0.71
RNF4-220ENST00000513578 IGHDP01880 384 aa10.64□□□□□ -0.71
RNF4-220ENST00000513578 ZNF530Q6P9A1 599 aaPredicted RBP10.64□□□□□ -0.71
RNF4-220ENST00000513578 RGS17Q9UGC6 210 aaPredicted RBP10.64□□□□□ -0.71
RNF4-220ENST00000513578 PCDHB15Q9Y5E8 787 aa10.64□□□□□ -0.71
RNF4-220ENST00000513578 RGS12O14924 1447 aa10.64□□□□□ -0.71
RNF4-220ENST00000513578 ELL2O00472 640 aaPredicted RBP10.63□□□□□ -0.71
RNF4-220ENST00000513578 ZBTB7BO15156 539 aaPredicted RBP10.63□□□□□ -0.71
RNF4-220ENST00000513578 RNMTO43148 476 aaKnown RBP10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms