RNA–Protein interactions for RNA: ENST00000510187.5

SQSTM1-213, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 1,714 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-213ENST00000510187 BCAR3O75815 825 aa20.58■□□□□ 0.89
SQSTM1-213ENST00000510187 FAM161AQ3B820 660 aa20.58■□□□□ 0.89
SQSTM1-213ENST00000510187 NUTM2AQ8IVF1 878 aaPredicted RBP20.58■□□□□ 0.89
SQSTM1-213ENST00000510187 RGPD5Q99666 1765 aa20.58■□□□□ 0.89
SQSTM1-213ENST00000510187 CSB-PGBD3P0DP91 1061 aa20.58■□□□□ 0.88
SQSTM1-213ENST00000510187 USHBP1Q8N6Y0 703 aa20.58■□□□□ 0.88
SQSTM1-213ENST00000510187 KDRP35968 1356 aa20.58■□□□□ 0.88
SQSTM1-213ENST00000510187 ADAMTS2O95450 1211 aa20.57■□□□□ 0.88
SQSTM1-213ENST00000510187 NBR1Q14596 966 aa20.57■□□□□ 0.88
SQSTM1-213ENST00000510187 RTL5Q5HYW3 569 aaPredicted RBP20.57■□□□□ 0.88
SQSTM1-213ENST00000510187 RRP7AQ9Y3A4 280 aaKnown RBP20.57■□□□□ 0.88
SQSTM1-213ENST00000510187 CAMTA1Q9Y6Y1 1673 aa20.56■□□□□ 0.88
SQSTM1-213ENST00000510187 NEUROD2Q15784 382 aa20.56■□□□□ 0.88
SQSTM1-213ENST00000510187 PHACTR3Q96KR7 559 aa20.56■□□□□ 0.88
SQSTM1-213ENST00000510187 LMO7Q8WWI1 1683 aa20.56■□□□□ 0.88
SQSTM1-213ENST00000510187 DEKP35659 375 aaKnown RBP20.56■□□□□ 0.88
SQSTM1-213ENST00000510187 NLRP2Q9NX02 1062 aa20.55■□□□□ 0.88
SQSTM1-213ENST00000510187 COL5A2P05997 1499 aaPredicted RBP20.53■□□□□ 0.88
SQSTM1-213ENST00000510187 TMPOP42166 694 aaKnown RBP20.53■□□□□ 0.88
SQSTM1-213ENST00000510187 BCL11AQ9H165 835 aa20.53■□□□□ 0.88
SQSTM1-213ENST00000510187 BTG4Q9NY30 223 aa20.53■□□□□ 0.88
SQSTM1-213ENST00000510187 USP35Q9P2H5 1018 aa20.53■□□□□ 0.88
SQSTM1-213ENST00000510187 EVA1CP58658 441 aa20.53■□□□□ 0.88
SQSTM1-213ENST00000510187 C8orf34Q49A92 452 aa20.53■□□□□ 0.88
SQSTM1-213ENST00000510187 SKAP1Q86WV1 359 aa20.53■□□□□ 0.88
SQSTM1-213ENST00000510187 RGPD2P0DJD1 1756 aa20.52■□□□□ 0.88
SQSTM1-213ENST00000510187 SPATA31A6Q5VVP1 1343 aa20.52■□□□□ 0.88
SQSTM1-213ENST00000510187 WDR17Q8IZU2 1322 aa20.52■□□□□ 0.88
SQSTM1-213ENST00000510187 STRN4Q9NRL3 753 aa20.52■□□□□ 0.88
SQSTM1-213ENST00000510187 COL14A1Q05707 1796 aaKnown RBP20.51■□□□□ 0.87
SQSTM1-213ENST00000510187 CLUAP1Q96AJ1 413 aa20.51■□□□□ 0.87
SQSTM1-213ENST00000510187 CANXP27824 592 aaKnown RBP20.5■□□□□ 0.87
SQSTM1-213ENST00000510187 RARSP54136 660 aaKnown RBP20.5■□□□□ 0.87
SQSTM1-213ENST00000510187 RIPK4P57078 832 aa20.5■□□□□ 0.87
SQSTM1-213ENST00000510187 NFE2L2Q16236 605 aa20.5■□□□□ 0.87
SQSTM1-213ENST00000510187 TOM1L2Q6ZVM7 507 aa20.5■□□□□ 0.87
SQSTM1-213ENST00000510187 NCAPD2Q15021 1401 aa20.5■□□□□ 0.87
SQSTM1-213ENST00000510187 MYH16Q9H6N6 1097 aa20.5■□□□□ 0.87
SQSTM1-213ENST00000510187 FAM208AQ9UK61 1670 aaKnown RBP20.49■□□□□ 0.87
SQSTM1-213ENST00000510187 VIRMAQ69YN4 1812 aaKnown RBP20.49■□□□□ 0.87
SQSTM1-213ENST00000510187 CT47B1P0C2W7 299 aaPredicted RBP20.49■□□□□ 0.87
SQSTM1-213ENST00000510187 LARP1Q6PKG0 1096 aaKnown RBP20.48■□□□□ 0.87
SQSTM1-213ENST00000510187 MTHFSDQ2M296 383 aaKnown RBP20.46■□□□□ 0.87
SQSTM1-213ENST00000510187 TRIM35Q9UPQ4 493 aa20.46■□□□□ 0.87
SQSTM1-213ENST00000510187 GAS2L2Q8NHY3 880 aa20.45■□□□□ 0.86
SQSTM1-213ENST00000510187 RAPGEF4Q8WZA2 1011 aa20.45■□□□□ 0.86
SQSTM1-213ENST00000510187 C8orf37Q96NL8 207 aa20.44■□□□□ 0.86
SQSTM1-213ENST00000510187 CARD10Q9BWT7 1032 aa20.44■□□□□ 0.86
SQSTM1-213ENST00000510187 IGHDP01880 384 aa20.44■□□□□ 0.86
SQSTM1-213ENST00000510187 LRP6O75581 1613 aa20.44■□□□□ 0.86
SQSTM1-213ENST00000510187 PLCH1Q4KWH8 1693 aa20.43■□□□□ 0.86
SQSTM1-213ENST00000510187 LMOD3Q0VAK6 560 aa20.43■□□□□ 0.86
SQSTM1-213ENST00000510187 PANK1Q8TE04 598 aa20.43■□□□□ 0.86
SQSTM1-213ENST00000510187 NGLY1Q96IV0 654 aa20.43■□□□□ 0.86
SQSTM1-213ENST00000510187 COG6Q9Y2V7 657 aa20.43■□□□□ 0.86
SQSTM1-213ENST00000510187 CRB1P82279 1406 aa20.43■□□□□ 0.86
SQSTM1-213ENST00000510187 RGS3P49796 1198 aa20.42■□□□□ 0.86
SQSTM1-213ENST00000510187 TATP17735 454 aaPredicted RBP20.41■□□□□ 0.86
SQSTM1-213ENST00000510187 AMOTQ4VCS5 1084 aa20.41■□□□□ 0.86
SQSTM1-213ENST00000510187 PLEKHO1Q53GL0 409 aaPredicted RBP20.41■□□□□ 0.86
SQSTM1-213ENST00000510187 SLIT2O94813 1529 aa20.41■□□□□ 0.86
SQSTM1-213ENST00000510187 MEX3CQ5U5Q3 659 aaKnown RBP20.41■□□□□ 0.86
SQSTM1-213ENST00000510187 IL16Q14005 1332 aa20.41■□□□□ 0.86
SQSTM1-213ENST00000510187 MEGF6O75095 1541 aa20.4■□□□□ 0.86
SQSTM1-213ENST00000510187 FRAT1Q92837 279 aaPredicted RBP20.39■□□□□ 0.86
SQSTM1-213ENST00000510187 DAXXQ9UER7 740 aaPredicted RBP20.39■□□□□ 0.85
SQSTM1-213ENST00000510187 LAS1LQ9Y4W2 734 aaKnown RBP20.39■□□□□ 0.85
SQSTM1-213ENST00000510187 RTF1Q92541 710 aaKnown RBP20.38■□□□□ 0.85
SQSTM1-213ENST00000510187 THUMPD2Q9BTF0 503 aaKnown RBP20.38■□□□□ 0.85
SQSTM1-213ENST00000510187 NWD2Q9ULI1 1742 aa20.38■□□□□ 0.85
SQSTM1-213ENST00000510187 DLG5Q8TDM6 1919 aa20.38■□□□□ 0.85
SQSTM1-213ENST00000510187 NRAPQ86VF7 1730 aa20.37■□□□□ 0.85
SQSTM1-213ENST00000510187 GNAT3A8MTJ3 354 aa20.37■□□□□ 0.85
SQSTM1-213ENST00000510187 IL2RBP14784 551 aa20.37■□□□□ 0.85
SQSTM1-213ENST00000510187 DCTN1Q14203 1278 aa20.37■□□□□ 0.85
SQSTM1-213ENST00000510187 ZNF530Q6P9A1 599 aaPredicted RBP20.37■□□□□ 0.85
SQSTM1-213ENST00000510187 UNC5CLQ8IV45 518 aa20.37■□□□□ 0.85
SQSTM1-213ENST00000510187 FNBP4Q8N3X1 1017 aaPredicted RBP20.37■□□□□ 0.85
SQSTM1-213ENST00000510187 FBXO41Q8TF61 875 aa20.37■□□□□ 0.85
SQSTM1-213ENST00000510187 SPG7Q9UQ90 795 aa20.36■□□□□ 0.85
SQSTM1-213ENST00000510187 MAP3K5Q99683 1374 aa20.36■□□□□ 0.85
SQSTM1-213ENST00000510187 PLEKHG2Q9H7P9 1386 aa20.36■□□□□ 0.85
SQSTM1-213ENST00000510187 CALD1Q05682 793 aaKnown RBP20.36■□□□□ 0.85
SQSTM1-213ENST00000510187 MCM10Q7L590 875 aa20.36■□□□□ 0.85
SQSTM1-213ENST00000510187 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.36■□□□□ 0.85
SQSTM1-213ENST00000510187 HTATSF1O43719 755 aaKnown RBP20.35■□□□□ 0.85
SQSTM1-213ENST00000510187 C1orf141Q5JVX7 400 aa20.35■□□□□ 0.85
SQSTM1-213ENST00000510187 CCDC9Q9Y3X0 531 aaKnown RBP20.35■□□□□ 0.85
SQSTM1-213ENST00000510187 BCL9LQ86UU0 1499 aa20.34■□□□□ 0.85
SQSTM1-213ENST00000510187 OVOS2A0A0G2JMS6 1433 aa20.34■□□□□ 0.85
SQSTM1-213ENST00000510187 RLBP1P12271 317 aa20.34■□□□□ 0.85
SQSTM1-213ENST00000510187 AKAP4Q5JQC9 854 aa20.34■□□□□ 0.85
SQSTM1-213ENST00000510187 ZKSCAN2Q63HK3 967 aa20.34■□□□□ 0.85
SQSTM1-213ENST00000510187 USP21Q9UK80 565 aa20.34■□□□□ 0.85
SQSTM1-213ENST00000510187 SPATA31A1Q5TZJ5 1347 aa20.33■□□□□ 0.85
SQSTM1-213ENST00000510187 MVPQ14764 893 aaKnown RBP20.33■□□□□ 0.85
SQSTM1-213ENST00000510187 RWDD1Q9H446 243 aaPredicted RBP20.33■□□□□ 0.85
SQSTM1-213ENST00000510187 SPATA31A5Q5VU36 1347 aa20.32■□□□□ 0.84
SQSTM1-213ENST00000510187 SPATA31A7Q8IWB4 1347 aa20.32■□□□□ 0.84
SQSTM1-213ENST00000510187 PARP4Q9UKK3 1724 aaKnown RBP20.32■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 75.8 ms