RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 AATKQ6ZMQ8 1374 aa11.12□□□□□ -0.63
LIMCH1-209ENST00000509277 USP31Q70CQ4 1352 aa11.12□□□□□ -0.63
LIMCH1-209ENST00000509277 FAM182BQ5T319 152 aa11.11□□□□□ -0.63
LIMCH1-209ENST00000509277 NFE2L2Q16236 605 aa11.11□□□□□ -0.63
LIMCH1-209ENST00000509277 ERBB3P21860 1342 aa11.11□□□□□ -0.63
LIMCH1-209ENST00000509277 GSE1Q14687 1217 aa11.11□□□□□ -0.63
LIMCH1-209ENST00000509277 INSRP06213 1382 aa11.1□□□□□ -0.63
LIMCH1-209ENST00000509277 TEFQ10587 303 aa11.1□□□□□ -0.63
LIMCH1-209ENST00000509277 PXDNQ92626 1479 aa11.1□□□□□ -0.63
LIMCH1-209ENST00000509277 ZNF428Q96B54 188 aa11.1□□□□□ -0.63
LIMCH1-209ENST00000509277 PLEKHO1Q53GL0 409 aaPredicted RBP11.09□□□□□ -0.63
LIMCH1-209ENST00000509277 USP19O94966 1318 aa11.09□□□□□ -0.63
LIMCH1-209ENST00000509277 FAM98CQ17RN3 349 aaKnown RBP11.09□□□□□ -0.63
LIMCH1-209ENST00000509277 KRT24Q2M2I5 525 aa11.09□□□□□ -0.63
LIMCH1-209ENST00000509277 GZF1Q9H116 711 aaPredicted RBP11.09□□□□□ -0.63
LIMCH1-209ENST00000509277 CDK12Q9NYV4 1490 aaPredicted RBP11.08□□□□□ -0.64
LIMCH1-209ENST00000509277 PLEKHF1Q96S99 279 aa11.08□□□□□ -0.64
LIMCH1-209ENST00000509277 LGR6Q9HBX8 967 aa11.08□□□□□ -0.64
LIMCH1-209ENST00000509277 ZNF330Q9Y3S2 320 aaPredicted RBP11.08□□□□□ -0.64
LIMCH1-209ENST00000509277 PNPLA6Q8IY17 1366 aa11.08□□□□□ -0.64
LIMCH1-209ENST00000509277 CLUAP1Q96AJ1 413 aa11.08□□□□□ -0.64
LIMCH1-209ENST00000509277 KIF1AQ12756 1690 aa11.07□□□□□ -0.64
LIMCH1-209ENST00000509277 EXOSC9Q06265 439 aaKnown RBP11.07□□□□□ -0.64
LIMCH1-209ENST00000509277 SPRYD3Q8NCJ5 442 aa11.07□□□□□ -0.64
LIMCH1-209ENST00000509277 GAS2L2Q8NHY3 880 aa11.07□□□□□ -0.64
LIMCH1-209ENST00000509277 TSPYL4Q9UJ04 414 aa11.07□□□□□ -0.64
LIMCH1-209ENST00000509277 USP21Q9UK80 565 aa11.07□□□□□ -0.64
LIMCH1-209ENST00000509277 GNAT3A8MTJ3 354 aa11.07□□□□□ -0.64
LIMCH1-209ENST00000509277 EIF2S2P20042 333 aaKnown RBP11.07□□□□□ -0.64
LIMCH1-209ENST00000509277 ACSBG1Q96GR2 724 aa11.07□□□□□ -0.64
LIMCH1-209ENST00000509277 RCAN3Q9UKA8 241 aa11.07□□□□□ -0.64
LIMCH1-209ENST00000509277 TRIM35Q9UPQ4 493 aa11.07□□□□□ -0.64
LIMCH1-209ENST00000509277 IGSF1Q8N6C5 1336 aa11.06□□□□□ -0.64
LIMCH1-209ENST00000509277 MED1Q15648 1581 aaPredicted RBP11.06□□□□□ -0.64
LIMCH1-209ENST00000509277 NRKQ7Z2Y5 1582 aa11.06□□□□□ -0.64
LIMCH1-209ENST00000509277 SLC39A6Q13433 755 aa11.05□□□□□ -0.64
LIMCH1-209ENST00000509277 NGEFQ8N5V2 710 aa11.05□□□□□ -0.64
LIMCH1-209ENST00000509277 RGS3P49796 1198 aa11.05□□□□□ -0.64
LIMCH1-209ENST00000509277 LMOD3Q0VAK6 560 aa11.05□□□□□ -0.64
LIMCH1-209ENST00000509277 MYH16Q9H6N6 1097 aa11.05□□□□□ -0.64
LIMCH1-209ENST00000509277 PHLPP1O60346 1717 aa11.05□□□□□ -0.64
LIMCH1-209ENST00000509277 E9PSI1 815 aa11.05□□□□□ -0.64
LIMCH1-209ENST00000509277 IL2RBP14784 551 aa11.05□□□□□ -0.64
LIMCH1-209ENST00000509277 HSP90AA2PQ14568 343 aaPredicted RBP11.05□□□□□ -0.64
LIMCH1-209ENST00000509277 SPG7Q9UQ90 795 aa11.05□□□□□ -0.64
LIMCH1-209ENST00000509277 PEAK1Q9H792 1746 aa11.05□□□□□ -0.64
LIMCH1-209ENST00000509277 BCAR3O75815 825 aa11.04□□□□□ -0.64
LIMCH1-209ENST00000509277 SLKQ9H2G2 1235 aaPredicted RBP11.04□□□□□ -0.64
LIMCH1-209ENST00000509277 WDR17Q8IZU2 1322 aa11.04□□□□□ -0.64
LIMCH1-209ENST00000509277 PTCD1O75127 700 aaKnown RBP11.04□□□□□ -0.64
LIMCH1-209ENST00000509277 NFKBIBQ15653 356 aa11.04□□□□□ -0.64
LIMCH1-209ENST00000509277 ZCRB1Q8TBF4 217 aaKnown RBP11.04□□□□□ -0.64
LIMCH1-209ENST00000509277 LTN1O94822 1766 aa11.04□□□□□ -0.64
LIMCH1-209ENST00000509277 JCADQ9P266 1359 aa11.04□□□□□ -0.64
LIMCH1-209ENST00000509277 ANKRD26Q9UPS8 1709 aa11.03□□□□□ -0.64
LIMCH1-209ENST00000509277 SLFN5Q08AF3 891 aa11.03□□□□□ -0.64
LIMCH1-209ENST00000509277 BLMP54132 1417 aaPredicted RBP11.03□□□□□ -0.64
LIMCH1-209ENST00000509277 AFF2P51816 1311 aa11.03□□□□□ -0.64
LIMCH1-209ENST00000509277 EXOC5O00471 708 aa11.03□□□□□ -0.64
LIMCH1-209ENST00000509277 SMC4Q9NTJ3 1288 aa11.03□□□□□ -0.64
LIMCH1-209ENST00000509277 COL3A1P02461 1466 aaPredicted RBP11.03□□□□□ -0.64
LIMCH1-209ENST00000509277 PDE4AP27815 886 aa11.03□□□□□ -0.64
LIMCH1-209ENST00000509277 FRAT2O75474 233 aaPredicted RBP11.02□□□□□ -0.65
LIMCH1-209ENST00000509277 DUSP27Q5VZP5 1158 aa11.02□□□□□ -0.65
LIMCH1-209ENST00000509277 NFATC2IPQ8NCF5 419 aa11.02□□□□□ -0.65
LIMCH1-209ENST00000509277 MBIPQ9NS73 344 aa11.02□□□□□ -0.65
LIMCH1-209ENST00000509277 PIP4K2AP48426 406 aaPredicted RBP11.02□□□□□ -0.65
LIMCH1-209ENST00000509277 CABP4P57796 275 aa11.02□□□□□ -0.65
LIMCH1-209ENST00000509277 TSPYL6Q8N831 410 aa11.02□□□□□ -0.65
LIMCH1-209ENST00000509277 IL17REQ8NFR9 667 aa11.02□□□□□ -0.65
LIMCH1-209ENST00000509277 RGPD5Q99666 1765 aa11.02□□□□□ -0.65
LIMCH1-209ENST00000509277 KCNQ3O43525 872 aa11.01□□□□□ -0.65
LIMCH1-209ENST00000509277 PDE3BQ13370 1112 aa11.01□□□□□ -0.65
LIMCH1-209ENST00000509277 RTL1A6NKG5 1358 aa11.01□□□□□ -0.65
LIMCH1-209ENST00000509277 BTBD11A6QL63 1104 aa11.01□□□□□ -0.65
LIMCH1-209ENST00000509277 GNAI1P63096 354 aa11.01□□□□□ -0.65
LIMCH1-209ENST00000509277 DDB1Q16531 1140 aa11.01□□□□□ -0.65
LIMCH1-209ENST00000509277 RBM42Q9BTD8 480 aaKnown RBP11.01□□□□□ -0.65
LIMCH1-209ENST00000509277 NFAT5O94916 1531 aa11.01□□□□□ -0.65
LIMCH1-209ENST00000509277 ANXA1P04083 346 aa11.01□□□□□ -0.65
LIMCH1-209ENST00000509277 IFNL2Q8IZJ0 200 aa11.01□□□□□ -0.65
LIMCH1-209ENST00000509277 CAMTA1Q9Y6Y1 1673 aa11.01□□□□□ -0.65
LIMCH1-209ENST00000509277 TRPM3Q9HCF6 1732 aaPredicted RBP11.01□□□□□ -0.65
LIMCH1-209ENST00000509277 CALD1Q05682 793 aaKnown RBP11□□□□□ -0.65
LIMCH1-209ENST00000509277 EXOC6Q8TAG9 804 aa11□□□□□ -0.65
LIMCH1-209ENST00000509277 AMOTQ4VCS5 1084 aa11□□□□□ -0.65
LIMCH1-209ENST00000509277 QTRT2Q9H974 415 aaKnown RBP11□□□□□ -0.65
LIMCH1-209ENST00000509277 HSP90AA1P07900 732 aaKnown RBP11□□□□□ -0.65
LIMCH1-209ENST00000509277 TTC5Q8N0Z6 440 aa11□□□□□ -0.65
LIMCH1-209ENST00000509277 CARD10Q9BWT7 1032 aa11□□□□□ -0.65
LIMCH1-209ENST00000509277 SHPRHQ149N8 1683 aa11□□□□□ -0.65
LIMCH1-209ENST00000509277 RGPD2P0DJD1 1756 aa10.99□□□□□ -0.65
LIMCH1-209ENST00000509277 CYP27B1O15528 508 aa10.99□□□□□ -0.65
LIMCH1-209ENST00000509277 UNC5CLQ8IV45 518 aa10.99□□□□□ -0.65
LIMCH1-209ENST00000509277 C8orf58Q8NAV2 365 aa10.99□□□□□ -0.65
LIMCH1-209ENST00000509277 MAP3K5Q99683 1374 aa10.99□□□□□ -0.65
LIMCH1-209ENST00000509277 TWISTNBQ3B726 338 aaPredicted RBP10.99□□□□□ -0.65
LIMCH1-209ENST00000509277 WDR63Q8IWG1 891 aa10.99□□□□□ -0.65
LIMCH1-209ENST00000509277 AKAP4Q5JQC9 854 aa10.99□□□□□ -0.65
LIMCH1-209ENST00000509277 RNMTO43148 476 aaKnown RBP10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms