RNA–Protein interactions for RNA: ENST00000508319.1

HMGCS1-205, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 3

Gene HMGCS1, Length 591 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-205ENST00000508319 NBPF6Q5VWK0 638 aa18.1■□□□□ 0.49
HMGCS1-205ENST00000508319 DDX54Q8TDD1 881 aaKnown RBP18.1■□□□□ 0.49
HMGCS1-205ENST00000508319 NBPF4Q96M43 638 aa18.1■□□□□ 0.49
HMGCS1-205ENST00000508319 STK32BQ9NY57 414 aa18.1■□□□□ 0.49
HMGCS1-205ENST00000508319 NSD2O96028 1365 aa18.08■□□□□ 0.49
HMGCS1-205ENST00000508319 HSP90AB2PQ58FF8 381 aa18.08■□□□□ 0.48
HMGCS1-205ENST00000508319 USHBP1Q8N6Y0 703 aa18.08■□□□□ 0.48
HMGCS1-205ENST00000508319 LY75O60449 1722 aa18.08■□□□□ 0.48
HMGCS1-205ENST00000508319 QSER1Q2KHR3 1735 aa18.06■□□□□ 0.48
HMGCS1-205ENST00000508319 CGNL1Q0VF96 1302 aa18.06■□□□□ 0.48
HMGCS1-205ENST00000508319 ZBTB7AO95365 584 aa18.06■□□□□ 0.48
HMGCS1-205ENST00000508319 ZCRB1Q8TBF4 217 aaKnown RBP18.06■□□□□ 0.48
HMGCS1-205ENST00000508319 LRRC4BQ9NT99 713 aa18.06■□□□□ 0.48
HMGCS1-205ENST00000508319 PPP1R1BQ9UD71 204 aaPredicted RBP18.06■□□□□ 0.48
HMGCS1-205ENST00000508319 EMILIN1Q9Y6C2 1016 aa18.06■□□□□ 0.48
HMGCS1-205ENST00000508319 NCAPD2Q15021 1401 aa18.06■□□□□ 0.48
HMGCS1-205ENST00000508319 MAP2P11137 1827 aaKnown RBP18.05■□□□□ 0.48
HMGCS1-205ENST00000508319 TUBGCP6Q96RT7 1819 aa18.05■□□□□ 0.48
HMGCS1-205ENST00000508319 PTGER2P43116 358 aa18.05■□□□□ 0.48
HMGCS1-205ENST00000508319 PKD1L3Q7Z443 1732 aa18.05■□□□□ 0.48
HMGCS1-205ENST00000508319 ZNF827Q17R98 1081 aa18.04■□□□□ 0.48
HMGCS1-205ENST00000508319 PRIM1P49642 420 aaKnown RBP18.03■□□□□ 0.48
HMGCS1-205ENST00000508319 RAPGEF4Q8WZA2 1011 aa18.03■□□□□ 0.48
HMGCS1-205ENST00000508319 SYTL4Q96C24 671 aaPredicted RBP18.03■□□□□ 0.48
HMGCS1-205ENST00000508319 TOGARAM1Q9Y4F4 1720 aa18.03■□□□□ 0.48
HMGCS1-205ENST00000508319 HSPA5P11021 654 aaKnown RBP18.02■□□□□ 0.48
HMGCS1-205ENST00000508319 CCER1Q8TC90 406 aaPredicted RBP18.02■□□□□ 0.48
HMGCS1-205ENST00000508319 EIF4G2P78344 907 aaKnown RBP eCLIP18.01■□□□□ 0.47
HMGCS1-205ENST00000508319 SLC27A3Q5K4L6 730 aa18.01■□□□□ 0.47
HMGCS1-205ENST00000508319 POLR3GLQ9BT43 218 aa18.01■□□□□ 0.47
HMGCS1-205ENST00000508319 MTFR1LQ9H019 292 aa18.01■□□□□ 0.47
HMGCS1-205ENST00000508319 ATF5Q9Y2D1 282 aaPredicted RBP18.01■□□□□ 0.47
HMGCS1-205ENST00000508319 PCDH11XQ9BZA7 1347 aa18■□□□□ 0.47
HMGCS1-205ENST00000508319 PCDH11YQ9BZA8 1340 aa18■□□□□ 0.47
HMGCS1-205ENST00000508319 UTRNP46939 3433 aa18■□□□□ 0.47
HMGCS1-205ENST00000508319 TATP17735 454 aaPredicted RBP18■□□□□ 0.47
HMGCS1-205ENST00000508319 AKT1S1Q96B36 256 aa18■□□□□ 0.47
HMGCS1-205ENST00000508319 SGIP1Q9BQI5 828 aa18■□□□□ 0.47
HMGCS1-205ENST00000508319 COL24A1Q17RW2 1714 aa17.99■□□□□ 0.47
HMGCS1-205ENST00000508319 WASHC2AQ641Q2 1341 aa17.98■□□□□ 0.47
HMGCS1-205ENST00000508319 ITGB4P16144 1822 aa17.98■□□□□ 0.47
HMGCS1-205ENST00000508319 PPM1GO15355 546 aaPredicted RBP17.97■□□□□ 0.47
HMGCS1-205ENST00000508319 CYP27B1O15528 508 aa17.97■□□□□ 0.47
HMGCS1-205ENST00000508319 KCNQ4P56696 695 aa17.97■□□□□ 0.47
HMGCS1-205ENST00000508319 C5P01031 1676 aa17.96■□□□□ 0.47
HMGCS1-205ENST00000508319 POLKQ9UBT6 870 aa17.96■□□□□ 0.47
HMGCS1-205ENST00000508319 PNPLA7Q6ZV29 1317 aa17.96■□□□□ 0.46
HMGCS1-205ENST00000508319 TAF1LQ8IZX4 1826 aa17.95■□□□□ 0.46
HMGCS1-205ENST00000508319 CCNL1Q9UK58 526 aaPredicted RBP17.94■□□□□ 0.46
HMGCS1-205ENST00000508319 EYA1Q99502 592 aa17.93■□□□□ 0.46
HMGCS1-205ENST00000508319 FHDC1Q9C0D6 1143 aaPredicted RBP17.93■□□□□ 0.46
HMGCS1-205ENST00000508319 PANK3Q9H999 370 aa17.93■□□□□ 0.46
HMGCS1-205ENST00000508319 TNNT2P45379 298 aaPredicted RBP17.92■□□□□ 0.46
HMGCS1-205ENST00000508319 EIF4A2Q14240 407 aaKnown RBP17.91■□□□□ 0.46
HMGCS1-205ENST00000508319 SYT17Q9BSW7 474 aa17.91■□□□□ 0.46
HMGCS1-205ENST00000508319 TFCP2L1Q9NZI6 479 aa17.91■□□□□ 0.46
HMGCS1-205ENST00000508319 PALLDQ8WX93 1383 aa17.91■□□□□ 0.46
HMGCS1-205ENST00000508319 MAP3K5Q99683 1374 aa17.91■□□□□ 0.46
HMGCS1-205ENST00000508319 NKX1-1Q15270 411 aaPredicted RBP17.9■□□□□ 0.46
HMGCS1-205ENST00000508319 SLC16A10Q8TF71 515 aa17.9■□□□□ 0.46
HMGCS1-205ENST00000508319 ARXQ96QS3 562 aa17.9■□□□□ 0.46
HMGCS1-205ENST00000508319 MPRIPQ6WCQ1 1025 aa17.89■□□□□ 0.45
HMGCS1-205ENST00000508319 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.89■□□□□ 0.455e-27■■□□□ 12.2
HMGCS1-205ENST00000508319 SPG7Q9UQ90 795 aa17.89■□□□□ 0.45
HMGCS1-205ENST00000508319 IGSF1Q8N6C5 1336 aa17.89■□□□□ 0.45
HMGCS1-205ENST00000508319 PLEKHG2Q9H7P9 1386 aa17.89■□□□□ 0.45
HMGCS1-205ENST00000508319 GOLGB1Q14789 3259 aaKnown RBP17.89■□□□□ 0.45
HMGCS1-205ENST00000508319 C4BP0C0L5 1744 aa17.88■□□□□ 0.45
HMGCS1-205ENST00000508319 DCAF8L1A6NGE4 600 aa17.87■□□□□ 0.45
HMGCS1-205ENST00000508319 YY1P25490 414 aa17.87■□□□□ 0.45
HMGCS1-205ENST00000508319 UBR3Q6ZT12 1888 aa17.86■□□□□ 0.45
HMGCS1-205ENST00000508319 PIGBQ92521 554 aa17.85■□□□□ 0.45
HMGCS1-205ENST00000508319 KIF7Q2M1P5 1343 aa17.84■□□□□ 0.45
HMGCS1-205ENST00000508319 PHKG2P15735 406 aa17.84■□□□□ 0.45
HMGCS1-205ENST00000508319 COL23A1Q86Y22 540 aaPredicted RBP17.84■□□□□ 0.45
HMGCS1-205ENST00000508319 SMARCC1Q92922 1105 aaPredicted RBP17.84■□□□□ 0.45
HMGCS1-205ENST00000508319 POLD1P28340 1107 aa17.83■□□□□ 0.44
HMGCS1-205ENST00000508319 MORC1Q86VD1 984 aa17.83■□□□□ 0.44
HMGCS1-205ENST00000508319 IFNL2Q8IZJ0 200 aa17.83■□□□□ 0.44
HMGCS1-205ENST00000508319 CHD4Q14839 1912 aa17.82■□□□□ 0.44
HMGCS1-205ENST00000508319 AMER1Q5JTC6 1135 aaPredicted RBP17.81■□□□□ 0.44
HMGCS1-205ENST00000508319 TMOD3Q9NYL9 352 aa17.81■□□□□ 0.44
HMGCS1-205ENST00000508319 KNSTRNQ9Y448 316 aa17.81■□□□□ 0.44
HMGCS1-205ENST00000508319 KDM6AO15550 1401 aaPredicted RBP17.8■□□□□ 0.44
HMGCS1-205ENST00000508319 LOC102724428A0A0B4J2F2 783 aa17.79■□□□□ 0.44
HMGCS1-205ENST00000508319 HMGB2P26583 209 aaKnown RBP17.79■□□□□ 0.44
HMGCS1-205ENST00000508319 SIK1P57059 783 aa17.79■□□□□ 0.44
HMGCS1-205ENST00000508319 AMIGO3Q86WK7 504 aa17.79■□□□□ 0.44
HMGCS1-205ENST00000508319 ASAP1Q9ULH1 1129 aa17.79■□□□□ 0.44
HMGCS1-205ENST00000508319 KDRP35968 1356 aa17.79■□□□□ 0.44
HMGCS1-205ENST00000508319 ZNF831Q5JPB2 1677 aa17.78■□□□□ 0.44
HMGCS1-205ENST00000508319 MSL1Q68DK7 614 aa17.78■□□□□ 0.44
HMGCS1-205ENST00000508319 AEBP1Q8IUX7 1158 aa17.78■□□□□ 0.44
HMGCS1-205ENST00000508319 KLHL34Q8N239 644 aa17.78■□□□□ 0.44
HMGCS1-205ENST00000508319 LINC00116Q8NCU8 138 aa17.77■□□□□ 0.44
HMGCS1-205ENST00000508319 FLAD1Q8NFF5 587 aa17.77■□□□□ 0.44
HMGCS1-205ENST00000508319 NLGN2Q8NFZ4 835 aa17.77■□□□□ 0.44
HMGCS1-205ENST00000508319 AK7Q96M32 723 aa17.77■□□□□ 0.44
HMGCS1-205ENST00000508319 COL5A3P25940 1745 aaPredicted RBP17.76■□□□□ 0.43
HMGCS1-205ENST00000508319 PER1O15534 1290 aaPredicted RBP17.75■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms