RNA–Protein interactions for RNA: ENST00000508235.1

RNF4-210, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 603 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-210ENST00000508235 MARCH10Q8NA82 808 aaPredicted RBP20.18■□□□□ 0.82
RNF4-210ENST00000508235 PKD1L3Q7Z443 1732 aa20.16■□□□□ 0.82
RNF4-210ENST00000508235 SBF2Q86WG5 1849 aa20.16■□□□□ 0.82
RNF4-210ENST00000508235 COL3A1P02461 1466 aaPredicted RBP20.16■□□□□ 0.82
RNF4-210ENST00000508235 SHANK3Q9BYB0 1731 aa20.16■□□□□ 0.82
RNF4-210ENST00000508235 DDX54Q8TDD1 881 aaKnown RBP20.15■□□□□ 0.82
RNF4-210ENST00000508235 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.15■□□□□ 0.825e-7■■■□□ 16.7
RNF4-210ENST00000508235 SPG7Q9UQ90 795 aa20.15■□□□□ 0.82
RNF4-210ENST00000508235 NUDCQ9Y266 331 aa20.15■□□□□ 0.82
RNF4-210ENST00000508235 PCDH11XQ9BZA7 1347 aa20.15■□□□□ 0.82
RNF4-210ENST00000508235 PCDH11YQ9BZA8 1340 aa20.15■□□□□ 0.82
RNF4-210ENST00000508235 KDRP35968 1356 aa20.13■□□□□ 0.81
RNF4-210ENST00000508235 TRIM37O94972 964 aa20.13■□□□□ 0.81
RNF4-210ENST00000508235 SULT6B1Q6IMI4 303 aa20.13■□□□□ 0.81
RNF4-210ENST00000508235 TNS1Q9HBL0 1735 aaKnown RBP20.13■□□□□ 0.81
RNF4-210ENST00000508235 MYBBP1AQ9BQG0 1328 aaKnown RBP20.11■□□□□ 0.81
RNF4-210ENST00000508235 BAG6P46379 1132 aa20.11■□□□□ 0.81
RNF4-210ENST00000508235 U2SURPO15042 1029 aaKnown RBP20.1■□□□□ 0.81
RNF4-210ENST00000508235 AMOTQ4VCS5 1084 aa20.1■□□□□ 0.81
RNF4-210ENST00000508235 PLEKHO1Q53GL0 409 aaPredicted RBP20.1■□□□□ 0.81
RNF4-210ENST00000508235 KAT6BQ8WYB5 2073 aa20.1■□□□□ 0.81
RNF4-210ENST00000508235 NHSQ6T4R5 1651 aa20.1■□□□□ 0.81
RNF4-210ENST00000508235 AEBP1Q8IUX7 1158 aa20.09■□□□□ 0.81
RNF4-210ENST00000508235 BCL11BQ9C0K0 894 aaPredicted RBP20.09■□□□□ 0.81
RNF4-210ENST00000508235 PRKRIP1Q9H875 184 aaPredicted RBP20.09■□□□□ 0.81
RNF4-210ENST00000508235 APBA3O96018 575 aa20.07■□□□□ 0.8
RNF4-210ENST00000508235 HMOX1P09601 288 aa20.07■□□□□ 0.8
RNF4-210ENST00000508235 DOT1LQ8TEK3 1739 aa20.07■□□□□ 0.8
RNF4-210ENST00000508235 EP400Q96L91 3159 aa20.06■□□□□ 0.8
RNF4-210ENST00000508235 IFNL2Q8IZJ0 200 aa20.06■□□□□ 0.8
RNF4-210ENST00000508235 CYP27B1O15528 508 aa20.05■□□□□ 0.8
RNF4-210ENST00000508235 RGPD3A6NKT7 1758 aaPredicted RBP20.04■□□□□ 0.8
RNF4-210ENST00000508235 RGPD4Q7Z3J3 1758 aa20.04■□□□□ 0.8
RNF4-210ENST00000508235 HSP90AB1P08238 724 aaKnown RBP20.04■□□□□ 0.8
RNF4-210ENST00000508235 U2AF1L5P0DN76 240 aaPredicted RBP20.04■□□□□ 0.8
RNF4-210ENST00000508235 U2AF1Q01081 240 aaKnown RBP eCLIP20.04■□□□□ 0.8
RNF4-210ENST00000508235 NKX1-1Q15270 411 aaPredicted RBP20.04■□□□□ 0.8
RNF4-210ENST00000508235 ACSBG1Q96GR2 724 aa20.04■□□□□ 0.8
RNF4-210ENST00000508235 ANP32CO43423 234 aa20.03■□□□□ 0.8
RNF4-210ENST00000508235 PHKG2P15735 406 aa20.03■□□□□ 0.8
RNF4-210ENST00000508235 C1orf141Q5JVX7 400 aa20.03■□□□□ 0.8
RNF4-210ENST00000508235 DEFB132Q7Z7B7 95 aa20.03■□□□□ 0.8
RNF4-210ENST00000508235 FCHSD2O94868 740 aa20.02■□□□□ 0.8
RNF4-210ENST00000508235 ZNF530Q6P9A1 599 aaPredicted RBP20.02■□□□□ 0.8
RNF4-210ENST00000508235 BTAF1O14981 1849 aa20.02■□□□□ 0.79
RNF4-210ENST00000508235 PLSCR1O15162 318 aa20.01■□□□□ 0.79
RNF4-210ENST00000508235 KCNQ2O43526 872 aa20.01■□□□□ 0.79
RNF4-210ENST00000508235 SYTL4Q96C24 671 aaPredicted RBP20.01■□□□□ 0.79
RNF4-210ENST00000508235 PRIM1P49642 420 aaKnown RBP20■□□□□ 0.79
RNF4-210ENST00000508235 EN1Q05925 392 aaPredicted RBP20■□□□□ 0.79
RNF4-210ENST00000508235 PNNQ9H307 717 aaKnown RBP20■□□□□ 0.79
RNF4-210ENST00000508235 NEFMP07197 916 aa19.99■□□□□ 0.79
RNF4-210ENST00000508235 DCAF5Q96JK2 942 aa19.99■□□□□ 0.79
RNF4-210ENST00000508235 RSPH6AQ9H0K4 717 aa19.99■□□□□ 0.79
RNF4-210ENST00000508235 ITGB4P16144 1822 aa19.99■□□□□ 0.79
RNF4-210ENST00000508235 PRKAR2BP31323 418 aa19.98■□□□□ 0.79
RNF4-210ENST00000508235 AKAP4Q5JQC9 854 aa19.98■□□□□ 0.79
RNF4-210ENST00000508235 CAMKK2Q96RR4 588 aa19.98■□□□□ 0.79
RNF4-210ENST00000508235 TOGARAM1Q9Y4F4 1720 aa19.98■□□□□ 0.79
RNF4-210ENST00000508235 PTF1AQ7RTS3 328 aa19.97■□□□□ 0.79
RNF4-210ENST00000508235 GAS2L2Q8NHY3 880 aa19.97■□□□□ 0.79
RNF4-210ENST00000508235 EZH2Q15910 746 aaKnown RBP19.96■□□□□ 0.79
RNF4-210ENST00000508235 RREB1Q92766 1687 aa19.96■□□□□ 0.79
RNF4-210ENST00000508235 MTHFSDQ2M296 383 aaKnown RBP19.95■□□□□ 0.78
RNF4-210ENST00000508235 SCN11AQ9UI33 1791 aa19.95■□□□□ 0.78
RNF4-210ENST00000508235 VIRMAQ69YN4 1812 aaKnown RBP19.95■□□□□ 0.78
RNF4-210ENST00000508235 ERVV-2B6SEH9 535 aa19.94■□□□□ 0.78
RNF4-210ENST00000508235 WDR43Q15061 677 aaKnown RBP eCLIP19.94■□□□□ 0.78
RNF4-210ENST00000508235 TMOD3Q9NYL9 352 aa19.94■□□□□ 0.78
RNF4-210ENST00000508235 MPRIPQ6WCQ1 1025 aa19.93■□□□□ 0.78
RNF4-210ENST00000508235 KDM6AO15550 1401 aaPredicted RBP19.92■□□□□ 0.78
RNF4-210ENST00000508235 NUP188Q5SRE5 1749 aa19.91■□□□□ 0.78
RNF4-210ENST00000508235 HMGB2P26583 209 aaKnown RBP19.91■□□□□ 0.78
RNF4-210ENST00000508235 SMARCC1Q92922 1105 aaPredicted RBP19.91■□□□□ 0.78
RNF4-210ENST00000508235 MAP3K5Q99683 1374 aa19.91■□□□□ 0.78
RNF4-210ENST00000508235 LY75O60449 1722 aa19.9■□□□□ 0.78
RNF4-210ENST00000508235 GNAT3A8MTJ3 354 aa19.9■□□□□ 0.78
RNF4-210ENST00000508235 CABP4P57796 275 aa19.9■□□□□ 0.78
RNF4-210ENST00000508235 TXNRD1Q16881 649 aa19.9■□□□□ 0.78
RNF4-210ENST00000508235 PHACTR3Q96KR7 559 aa19.9■□□□□ 0.78
RNF4-210ENST00000508235 MAPK8IP3Q9UPT6 1336 aa19.9■□□□□ 0.78
RNF4-210ENST00000508235 SLC27A3Q5K4L6 730 aa19.89■□□□□ 0.77
RNF4-210ENST00000508235 NBPF14Q5TI25 921 aa19.89■□□□□ 0.77
RNF4-210ENST00000508235 PIGBQ92521 554 aa19.89■□□□□ 0.77
RNF4-210ENST00000508235 ADAMTS7Q9UKP4 1686 aa19.89■□□□□ 0.77
RNF4-210ENST00000508235 PLEKHF1Q96S99 279 aa19.88■□□□□ 0.77
RNF4-210ENST00000508235 RNMTO43148 476 aaKnown RBP19.87■□□□□ 0.77
RNF4-210ENST00000508235 PALLDQ8WX93 1383 aa19.86■□□□□ 0.77
RNF4-210ENST00000508235 PROM2Q8N271 834 aa19.86■□□□□ 0.77
RNF4-210ENST00000508235 MRC1P22897 1456 aa19.86■□□□□ 0.77
RNF4-210ENST00000508235 HTATSF1O43719 755 aaKnown RBP19.85■□□□□ 0.77
RNF4-210ENST00000508235 RTF1Q92541 710 aaKnown RBP19.85■□□□□ 0.77
RNF4-210ENST00000508235 SLC52A2Q9HAB3 445 aa19.85■□□□□ 0.77
RNF4-210ENST00000508235 LGR6Q9HBX8 967 aa19.85■□□□□ 0.77
RNF4-210ENST00000508235 DLG5Q8TDM6 1919 aa19.84■□□□□ 0.77
RNF4-210ENST00000508235 NFATC2IPQ8NCF5 419 aa19.84■□□□□ 0.77
RNF4-210ENST00000508235 MRS2Q9HD23 443 aa19.84■□□□□ 0.77
RNF4-210ENST00000508235 ADAMTS8Q9UP79 889 aa19.84■□□□□ 0.77
RNF4-210ENST00000508235 CCNL1Q9UK58 526 aaPredicted RBP19.83■□□□□ 0.77
RNF4-210ENST00000508235 TEFQ10587 303 aa19.82■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms