RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 ABCC4O15439 1325 aa15.12■□□□□ 0.01
NUP54-202ENST00000502850 SULT6B1Q6IMI4 303 aa15.12■□□□□ 0.01
NUP54-202ENST00000502850 NGDNQ8NEJ9 315 aaKnown RBP15.12■□□□□ 0.01
NUP54-202ENST00000502850 ATF3P18847 181 aa15.11■□□□□ 0.01
NUP54-202ENST00000502850 CADPS2Q86UW7 1296 aa15.11■□□□□ 0.01
NUP54-202ENST00000502850 THUMPD2Q9BTF0 503 aaKnown RBP15.1■□□□□ 0.01
NUP54-202ENST00000502850 KDRP35968 1356 aa15.1■□□□□ 0.01
NUP54-202ENST00000502850 GCC1Q96CN9 775 aa15.1■□□□□ 0.01
NUP54-202ENST00000502850 PHLPP1O60346 1717 aa15.1■□□□□ 0.01
NUP54-202ENST00000502850 MARF1Q9Y4F3 1742 aaKnown RBP15.08■□□□□ 0
NUP54-202ENST00000502850 USP19O94966 1318 aa15.08■□□□□ 0
NUP54-202ENST00000502850 MAP3K19Q56UN5 1328 aa15.08■□□□□ 0
NUP54-202ENST00000502850 RTL1A6NKG5 1358 aa15.07■□□□□ 0
NUP54-202ENST00000502850 NUTM2FA1L443 756 aa15.07■□□□□ 0
NUP54-202ENST00000502850 EIF5BO60841 1220 aaKnown RBP15.07■□□□□ 0
NUP54-202ENST00000502850 NUCB1Q02818 461 aa15.07■□□□□ 0
NUP54-202ENST00000502850 GAS2L2Q8NHY3 880 aa15.07■□□□□ 0
NUP54-202ENST00000502850 LRRC37A3O60309 1634 aa15.07■□□□□ 0
NUP54-202ENST00000502850 CHL1O00533 1208 aa15.06■□□□□ 0
NUP54-202ENST00000502850 HSP90AB2PQ58FF8 381 aa15.06■□□□□ 0
NUP54-202ENST00000502850 AEBP1Q8IUX7 1158 aa15.06■□□□□ 0
NUP54-202ENST00000502850 TSPYL6Q8N831 410 aa15.06■□□□□ 0
NUP54-202ENST00000502850 TBC1D32Q96NH3 1257 aa15.06■□□□□ 0
NUP54-202ENST00000502850 PTPRCP08575 1304 aa15.06■□□□□ 0
NUP54-202ENST00000502850 ZBTB7BO15156 539 aaPredicted RBP15.06■□□□□ 0
NUP54-202ENST00000502850 HTATSF1O43719 755 aaKnown RBP15.06■□□□□ 0
NUP54-202ENST00000502850 AMPHP49418 695 aa15.06■□□□□ 0
NUP54-202ENST00000502850 RTF1Q92541 710 aaKnown RBP15.06■□□□□ 0
NUP54-202ENST00000502850 IGSF1Q8N6C5 1336 aa15.05■□□□□ 0
NUP54-202ENST00000502850 DEKP35659 375 aaKnown RBP15.05■□□□□ -0
NUP54-202ENST00000502850 C8orf58Q8NAV2 365 aa15.05■□□□□ -0
NUP54-202ENST00000502850 DCCP43146 1447 aa15.04■□□□□ -0
NUP54-202ENST00000502850 CRB1P82279 1406 aa15.04■□□□□ -0
NUP54-202ENST00000502850 FAM83GA6ND36 823 aa15.04■□□□□ -0
NUP54-202ENST00000502850 SOS1Q07889 1333 aaPredicted RBP15.04■□□□□ -0
NUP54-202ENST00000502850 CHD1LQ86WJ1 897 aa15.03■□□□□ -0
NUP54-202ENST00000502850 INTS3Q68E01 1043 aaKnown RBP15.03■□□□□ -0
NUP54-202ENST00000502850 JCADQ9P266 1359 aa15.02■□□□□ -0
NUP54-202ENST00000502850 COL16A1Q07092 1604 aaPredicted RBP15.02■□□□□ -0
NUP54-202ENST00000502850 PHRF1Q9P1Y6 1649 aaKnown RBP15.02■□□□□ -0
NUP54-202ENST00000502850 LTN1O94822 1766 aa15.02□□□□□ -0.01
NUP54-202ENST00000502850 CACNA1FO60840 1977 aa15.02□□□□□ -0.01
NUP54-202ENST00000502850 NLRP6P59044 892 aa15.02□□□□□ -0.01
NUP54-202ENST00000502850 DCTN1Q14203 1278 aa15.02□□□□□ -0.01
NUP54-202ENST00000502850 RGS17Q9UGC6 210 aaPredicted RBP15.02□□□□□ -0.01
NUP54-202ENST00000502850 ELL2O00472 640 aaPredicted RBP15.01□□□□□ -0.01
NUP54-202ENST00000502850 SEC24BO95487 1268 aa15.01□□□□□ -0.01
NUP54-202ENST00000502850 BRINP3Q76B58 766 aa15.01□□□□□ -0.01
NUP54-202ENST00000502850 ADGRL3Q9HAR2 1447 aa15.01□□□□□ -0.01
NUP54-202ENST00000502850 AHDC1Q5TGY3 1603 aaPredicted RBP15□□□□□ -0.01
NUP54-202ENST00000502850 BMP2KLQ5H9B9 411 aa15□□□□□ -0.01
NUP54-202ENST00000502850 BABAM1Q9NWV8 329 aa15□□□□□ -0.01
NUP54-202ENST00000502850 MCM10Q7L590 875 aa14.99□□□□□ -0.01
NUP54-202ENST00000502850 N4BP2Q86UW6 1770 aaPredicted RBP14.99□□□□□ -0.01
NUP54-202ENST00000502850 FAM208AQ9UK61 1670 aaKnown RBP14.99□□□□□ -0.01
NUP54-202ENST00000502850 MST1RQ04912 1400 aa14.99□□□□□ -0.01
NUP54-202ENST00000502850 SOX12O15370 315 aa14.99□□□□□ -0.01
NUP54-202ENST00000502850 RGS12O14924 1447 aa14.98□□□□□ -0.01
NUP54-202ENST00000502850 HOXC9P31274 260 aa14.98□□□□□ -0.01
NUP54-202ENST00000502850 SLC4A3P48751 1232 aa14.98□□□□□ -0.01
NUP54-202ENST00000502850 MTHFSDQ2M296 383 aaKnown RBP14.98□□□□□ -0.01
NUP54-202ENST00000502850 EYA1Q99502 592 aa14.98□□□□□ -0.01
NUP54-202ENST00000502850 C22orf23Q9BZE7 217 aa14.98□□□□□ -0.01
NUP54-202ENST00000502850 TSPYL4Q9UJ04 414 aa14.98□□□□□ -0.01
NUP54-202ENST00000502850 PHF8Q9UPP1 1060 aa14.98□□□□□ -0.01
NUP54-202ENST00000502850 NFKBIBQ15653 356 aa14.97□□□□□ -0.01
NUP54-202ENST00000502850 RPAP2Q8IXW5 612 aaPredicted RBP14.97□□□□□ -0.01
NUP54-202ENST00000502850 ABTB2Q8N961 1025 aa14.97□□□□□ -0.01
NUP54-202ENST00000502850 LNPKQ9C0E8 428 aa14.97□□□□□ -0.01
NUP54-202ENST00000502850 MAP3K5Q99683 1374 aa14.97□□□□□ -0.01
NUP54-202ENST00000502850 SPATA31A6Q5VVP1 1343 aa14.96□□□□□ -0.01
NUP54-202ENST00000502850 NFAT5O94916 1531 aa14.96□□□□□ -0.01
NUP54-202ENST00000502850 ANKRD45Q5TZF3 282 aa14.96□□□□□ -0.01
NUP54-202ENST00000502850 KIF1AQ12756 1690 aa14.96□□□□□ -0.02
NUP54-202ENST00000502850 GNAT3A8MTJ3 354 aa14.95□□□□□ -0.02
NUP54-202ENST00000502850 CCT4P50991 539 aaKnown RBP14.95□□□□□ -0.02
NUP54-202ENST00000502850 KCNH5Q8NCM2 988 aa14.95□□□□□ -0.02
NUP54-202ENST00000502850 CHMP4AQ9BY43 222 aa14.95□□□□□ -0.02
NUP54-202ENST00000502850 POTEAQ6S8J7 498 aa14.95□□□□□ -0.02
NUP54-202ENST00000502850 STK31Q9BXU1 1019 aa14.95□□□□□ -0.02
NUP54-202ENST00000502850 NHSL1Q5SYE7 1610 aa14.94□□□□□ -0.02
NUP54-202ENST00000502850 MFAP1P55081 439 aaKnown RBP14.94□□□□□ -0.02
NUP54-202ENST00000502850 ANKRD44Q8N8A2 993 aa14.94□□□□□ -0.02
NUP54-202ENST00000502850 C1orf115Q9H7X2 142 aa14.94□□□□□ -0.02
NUP54-202ENST00000502850 ATP10DQ9P241 1426 aa14.94□□□□□ -0.02
NUP54-202ENST00000502850 PXDNLA1KZ92 1463 aa14.93□□□□□ -0.02
NUP54-202ENST00000502850 HMMRO75330 724 aa14.93□□□□□ -0.02
NUP54-202ENST00000502850 DCTPP1Q9H773 170 aa14.93□□□□□ -0.02
NUP54-202ENST00000502850 C1orf167Q5SNV9 1468 aa14.93□□□□□ -0.02
NUP54-202ENST00000502850 RBM25P49756 843 aaKnown RBP14.92□□□□□ -0.02
NUP54-202ENST00000502850 SIRT2Q8IXJ6 389 aa14.92□□□□□ -0.02
NUP54-202ENST00000502850 LRRC59Q96AG4 307 aaKnown RBP14.92□□□□□ -0.02
NUP54-202ENST00000502850 SLC4A2P04920 1241 aa14.92□□□□□ -0.02
NUP54-202ENST00000502850 MEX3CQ5U5Q3 659 aaKnown RBP14.92□□□□□ -0.02
NUP54-202ENST00000502850 CCDC30Q5VVM6 783 aa14.92□□□□□ -0.02
NUP54-202ENST00000502850 IP6K1Q92551 441 aa14.92□□□□□ -0.02
NUP54-202ENST00000502850 DDX17Q92841 729 aaKnown RBP14.92□□□□□ -0.02
NUP54-202ENST00000502850 LMO7Q8WWI1 1683 aa14.91□□□□□ -0.02
NUP54-202ENST00000502850 LRP6O75581 1613 aa14.91□□□□□ -0.02
NUP54-202ENST00000502850 HSCBQ8IWL3 235 aa14.91□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 111.7 ms