RNA–Protein interactions for RNA: ENST00000494646.1

MSH5-218, Transcript of mutS homolog 5, humanhuman

TSL 4

Gene MSH5, Length 528 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-218ENST00000494646 NHSQ6T4R5 1651 aa13.26□□□□□ -0.29
MSH5-218ENST00000494646 STK32BQ9NY57 414 aa13.26□□□□□ -0.29
MSH5-218ENST00000494646 SLC15A2Q16348 729 aa13.25□□□□□ -0.29
MSH5-218ENST00000494646 PPP4R3CPQ6ZMV5 832 aa13.25□□□□□ -0.29
MSH5-218ENST00000494646 PANK3Q9H999 370 aa13.25□□□□□ -0.29
MSH5-218ENST00000494646 SPON1Q9HCB6 807 aa13.25□□□□□ -0.29
MSH5-218ENST00000494646 RTL1A6NKG5 1358 aa13.24□□□□□ -0.29
MSH5-218ENST00000494646 INSRP06213 1382 aa13.24□□□□□ -0.29
MSH5-218ENST00000494646 ZBTB7AO95365 584 aa13.24□□□□□ -0.29
MSH5-218ENST00000494646 TATP17735 454 aaPredicted RBP13.24□□□□□ -0.29
MSH5-218ENST00000494646 RAPGEF4Q8WZA2 1011 aa13.24□□□□□ -0.29
MSH5-218ENST00000494646 PPP1R1BQ9UD71 204 aaPredicted RBP13.24□□□□□ -0.29
MSH5-218ENST00000494646 ATF5Q9Y2D1 282 aaPredicted RBP13.24□□□□□ -0.29
MSH5-218ENST00000494646 MEGF6O75095 1541 aa13.23□□□□□ -0.29
MSH5-218ENST00000494646 FLT4P35916 1363 aa13.23□□□□□ -0.29
MSH5-218ENST00000494646 CGNL1Q0VF96 1302 aa13.23□□□□□ -0.29
MSH5-218ENST00000494646 KCNQ4P56696 695 aa13.23□□□□□ -0.29
MSH5-218ENST00000494646 SMG6Q86US8 1419 aaKnown RBP13.22□□□□□ -0.29
MSH5-218ENST00000494646 SHANK3Q9BYB0 1731 aa13.22□□□□□ -0.29
MSH5-218ENST00000494646 NCBP3Q53F19 620 aaKnown RBP13.22□□□□□ -0.29
MSH5-218ENST00000494646 LRRC4BQ9NT99 713 aa13.22□□□□□ -0.29
MSH5-218ENST00000494646 POLKQ9UBT6 870 aa13.22□□□□□ -0.29
MSH5-218ENST00000494646 WASHC2AQ641Q2 1341 aa13.2□□□□□ -0.3
MSH5-218ENST00000494646 DOT1LQ8TEK3 1739 aa13.2□□□□□ -0.3
MSH5-218ENST00000494646 CASZ1Q86V15 1759 aa13.2□□□□□ -0.3
MSH5-218ENST00000494646 KIF24Q5T7B8 1368 aa13.2□□□□□ -0.3
MSH5-218ENST00000494646 EYA1Q99502 592 aa13.19□□□□□ -0.3
MSH5-218ENST00000494646 CYP27B1O15528 508 aa13.18□□□□□ -0.3
MSH5-218ENST00000494646 ZNF827Q17R98 1081 aa13.18□□□□□ -0.3
MSH5-218ENST00000494646 ANKRD26Q9UPS8 1709 aa13.17□□□□□ -0.3
MSH5-218ENST00000494646 MPRIPQ6WCQ1 1025 aa13.17□□□□□ -0.3
MSH5-218ENST00000494646 MORC1Q86VD1 984 aa13.17□□□□□ -0.3
MSH5-218ENST00000494646 PTGER2P43116 358 aa13.16□□□□□ -0.3
MSH5-218ENST00000494646 EIF4A2Q14240 407 aaKnown RBP13.16□□□□□ -0.3
MSH5-218ENST00000494646 SLC27A3Q5K4L6 730 aa13.16□□□□□ -0.3
MSH5-218ENST00000494646 NSD2O96028 1365 aa13.16□□□□□ -0.3
MSH5-218ENST00000494646 ITGB4P16144 1822 aa13.16□□□□□ -0.3
MSH5-218ENST00000494646 PCDH11XQ9BZA7 1347 aa13.15□□□□□ -0.3
MSH5-218ENST00000494646 PCDH11YQ9BZA8 1340 aa13.15□□□□□ -0.3
MSH5-218ENST00000494646 AKT1S1Q96B36 256 aa13.15□□□□□ -0.3
MSH5-218ENST00000494646 MTFR1LQ9H019 292 aa13.15□□□□□ -0.3
MSH5-218ENST00000494646 RTN4Q9NQC3 1192 aaKnown RBP13.15□□□□□ -0.3
MSH5-218ENST00000494646 CCNL1Q9UK58 526 aaPredicted RBP13.15□□□□□ -0.3
MSH5-218ENST00000494646 SPG7Q9UQ90 795 aa13.15□□□□□ -0.3
MSH5-218ENST00000494646 KNSTRNQ9Y448 316 aa13.15□□□□□ -0.3
MSH5-218ENST00000494646 LY75O60449 1722 aa13.14□□□□□ -0.31
MSH5-218ENST00000494646 TFCP2L1Q9NZI6 479 aa13.14□□□□□ -0.31
MSH5-218ENST00000494646 CNGB1Q14028 1251 aaPredicted RBP13.13□□□□□ -0.31
MSH5-218ENST00000494646 PAPPAQ13219 1627 aa13.13□□□□□ -0.31
MSH5-218ENST00000494646 KIF7Q2M1P5 1343 aa13.13□□□□□ -0.31
MSH5-218ENST00000494646 MSH5O43196 834 aa13.12□□□□□ -0.31
MSH5-218ENST00000494646 UTRNP46939 3433 aa13.11□□□□□ -0.31
MSH5-218ENST00000494646 TUBGCP6Q96RT7 1819 aa13.11□□□□□ -0.31
MSH5-218ENST00000494646 DCAF8L1A6NGE4 600 aa13.11□□□□□ -0.31
MSH5-218ENST00000494646 AMER1Q5JTC6 1135 aaPredicted RBP13.11□□□□□ -0.31
MSH5-218ENST00000494646 IFNL2Q8IZJ0 200 aa13.11□□□□□ -0.31
MSH5-218ENST00000494646 PIGBQ92521 554 aa13.11□□□□□ -0.31
MSH5-218ENST00000494646 FHDC1Q9C0D6 1143 aaPredicted RBP13.11□□□□□ -0.31
MSH5-218ENST00000494646 PNPLA7Q6ZV29 1317 aa13.11□□□□□ -0.31
MSH5-218ENST00000494646 PKD1L3Q7Z443 1732 aa13.1□□□□□ -0.31
MSH5-218ENST00000494646 TOGARAM1Q9Y4F4 1720 aa13.1□□□□□ -0.31
MSH5-218ENST00000494646 PHKG2P15735 406 aa13.1□□□□□ -0.31
MSH5-218ENST00000494646 NKX1-1Q15270 411 aaPredicted RBP13.1□□□□□ -0.31
MSH5-218ENST00000494646 ARXQ96QS3 562 aa13.1□□□□□ -0.31
MSH5-218ENST00000494646 SGIP1Q9BQI5 828 aa13.1□□□□□ -0.31
MSH5-218ENST00000494646 SYT17Q9BSW7 474 aa13.1□□□□□ -0.31
MSH5-218ENST00000494646 NCAPD2Q15021 1401 aa13.09□□□□□ -0.31
MSH5-218ENST00000494646 CC2D1BQ5T0F9 858 aaKnown RBP13.09□□□□□ -0.31
MSH5-218ENST00000494646 KLHL34Q8N239 644 aa13.09□□□□□ -0.31
MSH5-218ENST00000494646 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.09□□□□□ -0.31
MSH5-218ENST00000494646 COL23A1Q86Y22 540 aaPredicted RBP13.08□□□□□ -0.32
MSH5-218ENST00000494646 AEBP1Q8IUX7 1158 aa13.08□□□□□ -0.32
MSH5-218ENST00000494646 SLC16A10Q8TF71 515 aa13.08□□□□□ -0.32
MSH5-218ENST00000494646 TMOD3Q9NYL9 352 aa13.08□□□□□ -0.32
MSH5-218ENST00000494646 TAF1LQ8IZX4 1826 aa13.08□□□□□ -0.32
MSH5-218ENST00000494646 IGSF1Q8N6C5 1336 aa13.08□□□□□ -0.32
MSH5-218ENST00000494646 QSER1Q2KHR3 1735 aa13.08□□□□□ -0.32
MSH5-218ENST00000494646 PALLDQ8WX93 1383 aa13.07□□□□□ -0.32
MSH5-218ENST00000494646 PER1O15534 1290 aaPredicted RBP13.07□□□□□ -0.32
MSH5-218ENST00000494646 PLEKHO1Q53GL0 409 aaPredicted RBP13.07□□□□□ -0.32
MSH5-218ENST00000494646 SULT6B1Q6IMI4 303 aa13.07□□□□□ -0.32
MSH5-218ENST00000494646 SMIM5Q71RC9 77 aa13.07□□□□□ -0.32
MSH5-218ENST00000494646 SMARCC1Q92922 1105 aaPredicted RBP13.07□□□□□ -0.32
MSH5-218ENST00000494646 ASAP1Q9ULH1 1129 aa13.07□□□□□ -0.32
MSH5-218ENST00000494646 POLD1P28340 1107 aa13.06□□□□□ -0.32
MSH5-218ENST00000494646 MTHFSP49914 203 aa13.06□□□□□ -0.32
MSH5-218ENST00000494646 C5P01031 1676 aa13.05□□□□□ -0.32
MSH5-218ENST00000494646 YY1P25490 414 aa13.05□□□□□ -0.32
MSH5-218ENST00000494646 IL13P35225 146 aa13.05□□□□□ -0.32
MSH5-218ENST00000494646 MSL1Q68DK7 614 aa13.05□□□□□ -0.32
MSH5-218ENST00000494646 ATG3Q9NT62 314 aa13.05□□□□□ -0.32
MSH5-218ENST00000494646 LOC102724428A0A0B4J2F2 783 aa13.04□□□□□ -0.32
MSH5-218ENST00000494646 ATP6V1AP38606 617 aa13.04□□□□□ -0.32
MSH5-218ENST00000494646 SIK1P57059 783 aa13.04□□□□□ -0.32
MSH5-218ENST00000494646 ZNF530Q6P9A1 599 aaPredicted RBP13.04□□□□□ -0.32
MSH5-218ENST00000494646 PHF14O94880 888 aa13.03□□□□□ -0.32
MSH5-218ENST00000494646 AK7Q96M32 723 aa13.03□□□□□ -0.32
MSH5-218ENST00000494646 RBM42Q9BTD8 480 aaKnown RBP13.03□□□□□ -0.32
MSH5-218ENST00000494646 GOLGB1Q14789 3259 aaKnown RBP13.02□□□□□ -0.32
MSH5-218ENST00000494646 ERVV-2B6SEH9 535 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms