RNA–Protein interactions for RNA: ENST00000494012.1

MACF1-222, Transcript of microtubule-actin crosslinking factor 1, human

TSL 4

Gene MACF1, Length 667 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MACF1-222	ENST00000494012	BCL9	O00512	1426 aa		13.46	□□□□□ -0.26
MACF1-222	ENST00000494012	DIAPH1	O60610	1272 aa	Known RBP	13.45	□□□□□ -0.26
MACF1-222	ENST00000494012	IL13	P35225	146 aa		13.44	□□□□□ -0.26
MACF1-222	ENST00000494012	FAM182B	Q5T319	152 aa		13.44	□□□□□ -0.26
MACF1-222	ENST00000494012	SRCAP	Q6ZRS2	3230 aa		13.44	□□□□□ -0.26
MACF1-222	ENST00000494012	KDR	P35968	1356 aa		13.44	□□□□□ -0.26
MACF1-222	ENST00000494012	NHS	Q6T4R5	1651 aa		13.44	□□□□□ -0.26
MACF1-222	ENST00000494012	PCDH11X	Q9BZA7	1347 aa		13.43	□□□□□ -0.26
MACF1-222	ENST00000494012	PCDH11Y	Q9BZA8	1340 aa		13.43	□□□□□ -0.26
MACF1-222	ENST00000494012	SF3B2	Q13435	895 aa	Known RBP	13.43	□□□□□ -0.26
MACF1-222	ENST00000494012	MARCH10	Q8NA82	808 aa	Predicted RBP	13.43	□□□□□ -0.26
MACF1-222	ENST00000494012	ZCRB1	Q8TBF4	217 aa	Known RBP	13.43	□□□□□ -0.26
MACF1-222	ENST00000494012	DOT1L	Q8TEK3	1739 aa		13.43	□□□□□ -0.26
MACF1-222	ENST00000494012	MYBBP1A	Q9BQG0	1328 aa	Known RBP	13.41	□□□□□ -0.26
MACF1-222	ENST00000494012	RGPD3	A6NKT7	1758 aa	Predicted RBP	13.41	□□□□□ -0.26
MACF1-222	ENST00000494012	RGPD4	Q7Z3J3	1758 aa		13.41	□□□□□ -0.26
MACF1-222	ENST00000494012	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	13.41	□□□□□ -0.26	2e-6	■□□□□ 10.8
MACF1-222	ENST00000494012	SPG7	Q9UQ90	795 aa		13.41	□□□□□ -0.26
MACF1-222	ENST00000494012	SULT6B1	Q6IMI4	303 aa		13.4	□□□□□ -0.26
MACF1-222	ENST00000494012	DDX54	Q8TDD1	881 aa	Known RBP	13.4	□□□□□ -0.26
MACF1-222	ENST00000494012	NUDC	Q9Y266	331 aa		13.4	□□□□□ -0.26
MACF1-222	ENST00000494012	U2SURP	O15042	1029 aa	Known RBP	13.39	□□□□□ -0.27
MACF1-222	ENST00000494012	PRKRIP1	Q9H875	184 aa	Predicted RBP	13.39	□□□□□ -0.27
MACF1-222	ENST00000494012	KAT6B	Q8WYB5	2073 aa		13.38	□□□□□ -0.27
MACF1-222	ENST00000494012	TRIM37	O94972	964 aa		13.38	□□□□□ -0.27
MACF1-222	ENST00000494012	AMOT	Q4VCS5	1084 aa		13.38	□□□□□ -0.27
MACF1-222	ENST00000494012	AEBP1	Q8IUX7	1158 aa		13.38	□□□□□ -0.27
MACF1-222	ENST00000494012	BTAF1	O14981	1849 aa		13.38	□□□□□ -0.27
MACF1-222	ENST00000494012	TOGARAM1	Q9Y4F4	1720 aa		13.37	□□□□□ -0.27
MACF1-222	ENST00000494012	BAG6	P46379	1132 aa		13.37	□□□□□ -0.27
MACF1-222	ENST00000494012	PLEKHO1	Q53GL0	409 aa	Predicted RBP	13.37	□□□□□ -0.27
MACF1-222	ENST00000494012	BCL11B	Q9C0K0	894 aa	Predicted RBP	13.37	□□□□□ -0.27
MACF1-222	ENST00000494012	HMOX1	P09601	288 aa		13.36	□□□□□ -0.27
MACF1-222	ENST00000494012	ITGB4	P16144	1822 aa		13.36	□□□□□ -0.27
MACF1-222	ENST00000494012	RREB1	Q92766	1687 aa		13.35	□□□□□ -0.27
MACF1-222	ENST00000494012	VIRMA	Q69YN4	1812 aa	Known RBP	13.35	□□□□□ -0.27
MACF1-222	ENST00000494012	CYP27B1	O15528	508 aa		13.35	□□□□□ -0.27
MACF1-222	ENST00000494012	U2AF1L5	P0DN76	240 aa	Predicted RBP	13.35	□□□□□ -0.27
MACF1-222	ENST00000494012	U2AF1	Q01081	240 aa	Known RBP eCLIP	13.35	□□□□□ -0.27
MACF1-222	ENST00000494012	IFNL2	Q8IZJ0	200 aa		13.35	□□□□□ -0.27
MACF1-222	ENST00000494012	ANP32C	O43423	234 aa		13.34	□□□□□ -0.27
MACF1-222	ENST00000494012	APBA3	O96018	575 aa		13.34	□□□□□ -0.27
MACF1-222	ENST00000494012	HSP90AB1	P08238	724 aa	Known RBP	13.34	□□□□□ -0.27
MACF1-222	ENST00000494012	C1orf141	Q5JVX7	400 aa		13.34	□□□□□ -0.27
MACF1-222	ENST00000494012	SCN11A	Q9UI33	1791 aa		13.33	□□□□□ -0.28
MACF1-222	ENST00000494012	PHKG2	P15735	406 aa		13.33	□□□□□ -0.28
MACF1-222	ENST00000494012	NKX1-1	Q15270	411 aa	Predicted RBP	13.33	□□□□□ -0.28
MACF1-222	ENST00000494012	ZNF530	Q6P9A1	599 aa	Predicted RBP	13.33	□□□□□ -0.28
MACF1-222	ENST00000494012	ACSBG1	Q96GR2	724 aa		13.33	□□□□□ -0.28
MACF1-222	ENST00000494012	FCHSD2	O94868	740 aa		13.32	□□□□□ -0.28
MACF1-222	ENST00000494012	DEFB132	Q7Z7B7	95 aa		13.32	□□□□□ -0.28
MACF1-222	ENST00000494012	SYTL4	Q96C24	671 aa	Predicted RBP	13.32	□□□□□ -0.28
MACF1-222	ENST00000494012	NUP188	Q5SRE5	1749 aa		13.32	□□□□□ -0.28
MACF1-222	ENST00000494012	KCNQ2	O43526	872 aa		13.31	□□□□□ -0.28
MACF1-222	ENST00000494012	NEFM	P07197	916 aa		13.31	□□□□□ -0.28
MACF1-222	ENST00000494012	PRKAR2B	P31323	418 aa		13.31	□□□□□ -0.28
MACF1-222	ENST00000494012	DCAF5	Q96JK2	942 aa		13.31	□□□□□ -0.28
MACF1-222	ENST00000494012	RSPH6A	Q9H0K4	717 aa		13.31	□□□□□ -0.28
MACF1-222	ENST00000494012	PNN	Q9H307	717 aa	Known RBP	13.31	□□□□□ -0.28
MACF1-222	ENST00000494012	ADAMTS7	Q9UKP4	1686 aa		13.31	□□□□□ -0.28
MACF1-222	ENST00000494012	LY75	O60449	1722 aa		13.3	□□□□□ -0.28
MACF1-222	ENST00000494012	PLSCR1	O15162	318 aa		13.3	□□□□□ -0.28
MACF1-222	ENST00000494012	PRIM1	P49642	420 aa	Known RBP	13.3	□□□□□ -0.28
MACF1-222	ENST00000494012	EN1	Q05925	392 aa	Predicted RBP	13.3	□□□□□ -0.28
MACF1-222	ENST00000494012	AKAP4	Q5JQC9	854 aa		13.3	□□□□□ -0.28
MACF1-222	ENST00000494012	GAS2L2	Q8NHY3	880 aa		13.3	□□□□□ -0.28
MACF1-222	ENST00000494012	WDR43	Q15061	677 aa	Known RBP eCLIP	13.29	□□□□□ -0.28
MACF1-222	ENST00000494012	PTF1A	Q7RTS3	328 aa		13.29	□□□□□ -0.28
MACF1-222	ENST00000494012	KDM6A	O15550	1401 aa	Predicted RBP	13.29	□□□□□ -0.28
MACF1-222	ENST00000494012	MTHFSD	Q2M296	383 aa	Known RBP	13.28	□□□□□ -0.28
MACF1-222	ENST00000494012	CAMKK2	Q96RR4	588 aa		13.28	□□□□□ -0.28
MACF1-222	ENST00000494012	TMOD3	Q9NYL9	352 aa		13.28	□□□□□ -0.28
MACF1-222	ENST00000494012	MAP3K5	Q99683	1374 aa		13.28	□□□□□ -0.28
MACF1-222	ENST00000494012	DLG5	Q8TDM6	1919 aa		13.27	□□□□□ -0.28
MACF1-222	ENST00000494012	ERVV-2	B6SEH9	535 aa		13.27	□□□□□ -0.29
MACF1-222	ENST00000494012	EZH2	Q15910	746 aa	Known RBP	13.27	□□□□□ -0.29
MACF1-222	ENST00000494012	MPRIP	Q6WCQ1	1025 aa		13.27	□□□□□ -0.29
MACF1-222	ENST00000494012	MAPK8IP3	Q9UPT6	1336 aa		13.27	□□□□□ -0.29
MACF1-222	ENST00000494012	MRC1	P22897	1456 aa		13.27	□□□□□ -0.29
MACF1-222	ENST00000494012	GNAT3	A8MTJ3	354 aa		13.25	□□□□□ -0.29
MACF1-222	ENST00000494012	CABP4	P57796	275 aa		13.25	□□□□□ -0.29
MACF1-222	ENST00000494012	PHACTR3	Q96KR7	559 aa		13.25	□□□□□ -0.29
MACF1-222	ENST00000494012	SIPA1L3	O60292	1781 aa	Predicted RBP	13.25	□□□□□ -0.29
MACF1-222	ENST00000494012	C5	P01031	1676 aa		13.24	□□□□□ -0.29
MACF1-222	ENST00000494012	PAPPA	Q13219	1627 aa		13.24	□□□□□ -0.29
MACF1-222	ENST00000494012	PALLD	Q8WX93	1383 aa		13.24	□□□□□ -0.29
MACF1-222	ENST00000494012	TXNRD1	Q16881	649 aa		13.24	□□□□□ -0.29
MACF1-222	ENST00000494012	SLC27A3	Q5K4L6	730 aa		13.24	□□□□□ -0.29
MACF1-222	ENST00000494012	PIGB	Q92521	554 aa		13.24	□□□□□ -0.29
MACF1-222	ENST00000494012	SMARCC1	Q92922	1105 aa	Predicted RBP	13.24	□□□□□ -0.29
MACF1-222	ENST00000494012	ZNF831	Q5JPB2	1677 aa		13.24	□□□□□ -0.29
MACF1-222	ENST00000494012	HMGB2	P26583	209 aa	Known RBP	13.23	□□□□□ -0.29
MACF1-222	ENST00000494012	PLEKHF1	Q96S99	279 aa		13.23	□□□□□ -0.29
MACF1-222	ENST00000494012	TAF1L	Q8IZX4	1826 aa		13.23	□□□□□ -0.29
MACF1-222	ENST00000494012	NBPF14	Q5TI25	921 aa		13.22	□□□□□ -0.29
MACF1-222	ENST00000494012	RTF1	Q92541	710 aa	Known RBP	13.22	□□□□□ -0.29
MACF1-222	ENST00000494012	MRS2	Q9HD23	443 aa		13.22	□□□□□ -0.29
MACF1-222	ENST00000494012	RNMT	O43148	476 aa	Known RBP	13.21	□□□□□ -0.29
MACF1-222	ENST00000494012	HTATSF1	O43719	755 aa	Known RBP	13.21	□□□□□ -0.29
MACF1-222	ENST00000494012	SLC52A2	Q9HAB3	445 aa		13.21	□□□□□ -0.29

Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms