RNA–Protein interactions for RNA: ENST00000493923.1

HDAC6-234, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 404 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-234ENST00000493923 NHSQ6T4R5 1651 aa11.33□□□□□ -0.6
HDAC6-234ENST00000493923 SHANK3Q9BYB0 1731 aa11.32□□□□□ -0.6
HDAC6-234ENST00000493923 NINLQ9Y2I6 1382 aa11.32□□□□□ -0.6
HDAC6-234ENST00000493923 PLSCR1O15162 318 aa11.32□□□□□ -0.6
HDAC6-234ENST00000493923 IL2RBP14784 551 aa11.32□□□□□ -0.6
HDAC6-234ENST00000493923 HOXC9P31274 260 aa11.32□□□□□ -0.6
HDAC6-234ENST00000493923 BTAF1O14981 1849 aa11.32□□□□□ -0.6
HDAC6-234ENST00000493923 KIF20BQ96Q89 1820 aa11.31□□□□□ -0.6
HDAC6-234ENST00000493923 ABCB7O75027 752 aa11.31□□□□□ -0.6
HDAC6-234ENST00000493923 TMF1P82094 1093 aa11.31□□□□□ -0.6
HDAC6-234ENST00000493923 COG3Q96JB2 828 aa11.31□□□□□ -0.6
HDAC6-234ENST00000493923 MEGF6O75095 1541 aa11.3□□□□□ -0.6
HDAC6-234ENST00000493923 TXNRD1Q16881 649 aa11.3□□□□□ -0.6
HDAC6-234ENST00000493923 NBPF14Q5TI25 921 aa11.3□□□□□ -0.6
HDAC6-234ENST00000493923 USHBP1Q8N6Y0 703 aa11.3□□□□□ -0.6
HDAC6-234ENST00000493923 C11orf95C9JLR9 678 aaPredicted RBP11.29□□□□□ -0.6
HDAC6-234ENST00000493923 NBPF6Q5VWK0 638 aa11.29□□□□□ -0.6
HDAC6-234ENST00000493923 NBPF4Q96M43 638 aa11.29□□□□□ -0.6
HDAC6-234ENST00000493923 PAPPAQ13219 1627 aa11.28□□□□□ -0.6
HDAC6-234ENST00000493923 AMPHP49418 695 aa11.28□□□□□ -0.6
HDAC6-234ENST00000493923 DDX54Q8TDD1 881 aaKnown RBP11.28□□□□□ -0.6
HDAC6-234ENST00000493923 LRRC4BQ9NT99 713 aa11.28□□□□□ -0.6
HDAC6-234ENST00000493923 NSD3Q9BZ95 1437 aa11.27□□□□□ -0.6
HDAC6-234ENST00000493923 ZBTB7AO95365 584 aa11.27□□□□□ -0.61
HDAC6-234ENST00000493923 KCNQ4P56696 695 aa11.27□□□□□ -0.61
HDAC6-234ENST00000493923 HSP90AB2PQ58FF8 381 aa11.27□□□□□ -0.61
HDAC6-234ENST00000493923 EMILIN1Q9Y6C2 1016 aa11.27□□□□□ -0.61
HDAC6-234ENST00000493923 DOT1LQ8TEK3 1739 aa11.26□□□□□ -0.61
HDAC6-234ENST00000493923 ZNF827Q17R98 1081 aa11.26□□□□□ -0.61
HDAC6-234ENST00000493923 NSD2O96028 1365 aa11.26□□□□□ -0.61
HDAC6-234ENST00000493923 SLC15A2Q16348 729 aa11.25□□□□□ -0.61
HDAC6-234ENST00000493923 CCER1Q8TC90 406 aaPredicted RBP11.25□□□□□ -0.61
HDAC6-234ENST00000493923 ATF5Q9Y2D1 282 aaPredicted RBP11.25□□□□□ -0.61
HDAC6-234ENST00000493923 TUBGCP6Q96RT7 1819 aa11.25□□□□□ -0.61
HDAC6-234ENST00000493923 RTL1A6NKG5 1358 aa11.25□□□□□ -0.61
HDAC6-234ENST00000493923 ZNF316A6NFI3 1004 aaPredicted RBP11.24□□□□□ -0.61
HDAC6-234ENST00000493923 HSPA5P11021 654 aaKnown RBP11.24□□□□□ -0.61
HDAC6-234ENST00000493923 PTGER2P43116 358 aa11.24□□□□□ -0.61
HDAC6-234ENST00000493923 PRIM1P49642 420 aaKnown RBP11.24□□□□□ -0.61
HDAC6-234ENST00000493923 SPON1Q9HCB6 807 aa11.24□□□□□ -0.61
HDAC6-234ENST00000493923 MAP2P11137 1827 aaKnown RBP11.23□□□□□ -0.61
HDAC6-234ENST00000493923 SLC24A1O60721 1099 aa11.23□□□□□ -0.61
HDAC6-234ENST00000493923 ZCRB1Q8TBF4 217 aaKnown RBP11.23□□□□□ -0.61
HDAC6-234ENST00000493923 POLR3GLQ9BT43 218 aa11.23□□□□□ -0.61
HDAC6-234ENST00000493923 STK32BQ9NY57 414 aa11.23□□□□□ -0.61
HDAC6-234ENST00000493923 TIMELESSQ9UNS1 1208 aa11.23□□□□□ -0.61
HDAC6-234ENST00000493923 INSRP06213 1382 aa11.23□□□□□ -0.61
HDAC6-234ENST00000493923 SGIP1Q9BQI5 828 aa11.22□□□□□ -0.61
HDAC6-234ENST00000493923 ANKRD26Q9UPS8 1709 aa11.22□□□□□ -0.61
HDAC6-234ENST00000493923 TOGARAM1Q9Y4F4 1720 aa11.22□□□□□ -0.61
HDAC6-234ENST00000493923 LY75O60449 1722 aa11.21□□□□□ -0.61
HDAC6-234ENST00000493923 FLT4P35916 1363 aa11.21□□□□□ -0.61
HDAC6-234ENST00000493923 CDCA8Q53HL2 280 aa11.21□□□□□ -0.61
HDAC6-234ENST00000493923 FOXD4L1Q9NU39 408 aa11.21□□□□□ -0.61
HDAC6-234ENST00000493923 CYP27B1O15528 508 aa11.2□□□□□ -0.62
HDAC6-234ENST00000493923 AKT1S1Q96B36 256 aa11.2□□□□□ -0.62
HDAC6-234ENST00000493923 SYTL4Q96C24 671 aaPredicted RBP11.2□□□□□ -0.62
HDAC6-234ENST00000493923 POLKQ9UBT6 870 aa11.2□□□□□ -0.62
HDAC6-234ENST00000493923 PPP1R1BQ9UD71 204 aaPredicted RBP11.2□□□□□ -0.62
HDAC6-234ENST00000493923 NCAPD2Q15021 1401 aa11.19□□□□□ -0.62
HDAC6-234ENST00000493923 UTRNP46939 3433 aa11.19□□□□□ -0.62
HDAC6-234ENST00000493923 TNNT2P45379 298 aaPredicted RBP11.19□□□□□ -0.62
HDAC6-234ENST00000493923 ITGB4P16144 1822 aa11.19□□□□□ -0.62
HDAC6-234ENST00000493923 PKD1L3Q7Z443 1732 aa11.18□□□□□ -0.62
HDAC6-234ENST00000493923 PPM1GO15355 546 aaPredicted RBP11.18□□□□□ -0.62
HDAC6-234ENST00000493923 EYA1Q99502 592 aa11.18□□□□□ -0.62
HDAC6-234ENST00000493923 PNPLA7Q6ZV29 1317 aa11.17□□□□□ -0.62
HDAC6-234ENST00000493923 TATP17735 454 aaPredicted RBP11.17□□□□□ -0.62
HDAC6-234ENST00000493923 EIF4G2P78344 907 aaKnown RBP eCLIP11.17□□□□□ -0.62
HDAC6-234ENST00000493923 RAPGEF4Q8WZA2 1011 aa11.17□□□□□ -0.62
HDAC6-234ENST00000493923 PANK3Q9H999 370 aa11.17□□□□□ -0.62
HDAC6-234ENST00000493923 QSER1Q2KHR3 1735 aa11.17□□□□□ -0.62
HDAC6-234ENST00000493923 SMG6Q86US8 1419 aaKnown RBP11.17□□□□□ -0.62
HDAC6-234ENST00000493923 KIF24Q5T7B8 1368 aa11.16□□□□□ -0.62
HDAC6-234ENST00000493923 CGNL1Q0VF96 1302 aa11.16□□□□□ -0.62
HDAC6-234ENST00000493923 WASHC2AQ641Q2 1341 aa11.16□□□□□ -0.62
HDAC6-234ENST00000493923 SMIM5Q71RC9 77 aa11.16□□□□□ -0.62
HDAC6-234ENST00000493923 FHDC1Q9C0D6 1143 aaPredicted RBP11.16□□□□□ -0.62
HDAC6-234ENST00000493923 MTFR1LQ9H019 292 aa11.16□□□□□ -0.62
HDAC6-234ENST00000493923 COL24A1Q17RW2 1714 aa11.15□□□□□ -0.62
HDAC6-234ENST00000493923 TAF1LQ8IZX4 1826 aa11.15□□□□□ -0.62
HDAC6-234ENST00000493923 EIF4A2Q14240 407 aaKnown RBP11.15□□□□□ -0.62
HDAC6-234ENST00000493923 SLC27A3Q5K4L6 730 aa11.15□□□□□ -0.62
HDAC6-234ENST00000493923 AMIGO3Q86WK7 504 aa11.15□□□□□ -0.62
HDAC6-234ENST00000493923 SYT17Q9BSW7 474 aa11.14□□□□□ -0.63
HDAC6-234ENST00000493923 TSHZ2Q9NRE2 1034 aa11.14□□□□□ -0.63
HDAC6-234ENST00000493923 CCNL1Q9UK58 526 aaPredicted RBP11.14□□□□□ -0.63
HDAC6-234ENST00000493923 PCDH11XQ9BZA7 1347 aa11.13□□□□□ -0.63
HDAC6-234ENST00000493923 PCDH11YQ9BZA8 1340 aa11.13□□□□□ -0.63
HDAC6-234ENST00000493923 POLA2Q14181 598 aa11.13□□□□□ -0.63
HDAC6-234ENST00000493923 MPRIPQ6WCQ1 1025 aa11.13□□□□□ -0.63
HDAC6-234ENST00000493923 PIGBQ92521 554 aa11.13□□□□□ -0.63
HDAC6-234ENST00000493923 C5P01031 1676 aa11.13□□□□□ -0.63
HDAC6-234ENST00000493923 GOLGB1Q14789 3259 aaKnown RBP11.13□□□□□ -0.63
HDAC6-234ENST00000493923 COL23A1Q86Y22 540 aaPredicted RBP11.12□□□□□ -0.63
HDAC6-234ENST00000493923 ARXQ96QS3 562 aa11.12□□□□□ -0.63
HDAC6-234ENST00000493923 TFCP2L1Q9NZI6 479 aa11.12□□□□□ -0.63
HDAC6-234ENST00000493923 PALLDQ8WX93 1383 aa11.12□□□□□ -0.63
HDAC6-234ENST00000493923 NKX1-1Q15270 411 aaPredicted RBP11.11□□□□□ -0.63
HDAC6-234ENST00000493923 MSL1Q68DK7 614 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms