RNA–Protein interactions for RNA: ENST00000493829.5

USP39-218, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 1,660 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-218ENST00000493829 IL2RBP14784 551 aa25.55■■□□□ 1.68
USP39-218ENST00000493829 TMPOP42166 694 aaKnown RBP25.55■■□□□ 1.68
USP39-218ENST00000493829 NFE2L2Q16236 605 aa25.55■■□□□ 1.68
USP39-218ENST00000493829 PKD1L3Q7Z443 1732 aa25.54■■□□□ 1.68
USP39-218ENST00000493829 ATRNO75882 1429 aa25.53■■□□□ 1.68
USP39-218ENST00000493829 GLI3P10071 1580 aa25.53■■□□□ 1.68
USP39-218ENST00000493829 DISP2A7MBM2 1401 aa25.53■■□□□ 1.68
USP39-218ENST00000493829 RIPK4P57078 832 aa25.52■■□□□ 1.68
USP39-218ENST00000493829 PLEKHO1Q53GL0 409 aaPredicted RBP25.52■■□□□ 1.68
USP39-218ENST00000493829 FAM98CQ17RN3 349 aaKnown RBP25.51■■□□□ 1.67
USP39-218ENST00000493829 ZNF530Q6P9A1 599 aaPredicted RBP25.51■■□□□ 1.67
USP39-218ENST00000493829 GAS2L2Q8NHY3 880 aa25.51■■□□□ 1.67
USP39-218ENST00000493829 TRPC5Q9UL62 973 aaPredicted RBP25.51■■□□□ 1.67
USP39-218ENST00000493829 SHANK3Q9BYB0 1731 aa25.5■■□□□ 1.67
USP39-218ENST00000493829 LRRC37A3O60309 1634 aa25.49■■□□□ 1.67
USP39-218ENST00000493829 A0A0G2JS52 829 aa25.48■■□□□ 1.67
USP39-218ENST00000493829 MYT1Q01538 1121 aa25.48■■□□□ 1.67
USP39-218ENST00000493829 AMOTQ4VCS5 1084 aa25.48■■□□□ 1.67
USP39-218ENST00000493829 THRAP3Q9Y2W1 955 aaKnown RBP25.48■■□□□ 1.67
USP39-218ENST00000493829 QTRT2Q9H974 415 aaKnown RBP25.48■■□□□ 1.67
USP39-218ENST00000493829 SPG7Q9UQ90 795 aa25.48■■□□□ 1.67
USP39-218ENST00000493829 ZBED9Q6R2W3 1325 aa25.48■■□□□ 1.67
USP39-218ENST00000493829 GJD4Q96KN9 370 aaPredicted RBP25.47■■□□□ 1.67
USP39-218ENST00000493829 MAP3K5Q99683 1374 aa25.47■■□□□ 1.67
USP39-218ENST00000493829 DCTN1Q14203 1278 aa25.45■■□□□ 1.67
USP39-218ENST00000493829 ZNF772Q68DY9 489 aaPredicted RBP25.45■■□□□ 1.67
USP39-218ENST00000493829 ZCRB1Q8TBF4 217 aaKnown RBP25.45■■□□□ 1.67
USP39-218ENST00000493829 THUMPD2Q9BTF0 503 aaKnown RBP25.45■■□□□ 1.67
USP39-218ENST00000493829 PHF23Q9BUL5 403 aaPredicted RBP25.45■■□□□ 1.67
USP39-218ENST00000493829 TRIM35Q9UPQ4 493 aa25.45■■□□□ 1.67
USP39-218ENST00000493829 C1orf141Q5JVX7 400 aa25.45■■□□□ 1.66
USP39-218ENST00000493829 BARGINQ6ZT62 677 aa25.45■■□□□ 1.66
USP39-218ENST00000493829 TNS2Q63HR2 1409 aa25.44■■□□□ 1.66
USP39-218ENST00000493829 MCM10Q7L590 875 aa25.43■■□□□ 1.66
USP39-218ENST00000493829 WWC1Q8IX03 1113 aa25.43■■□□□ 1.66
USP39-218ENST00000493829 DDX54Q8TDD1 881 aaKnown RBP25.43■■□□□ 1.66
USP39-218ENST00000493829 PCDH11XQ9BZA7 1347 aa25.43■■□□□ 1.66
USP39-218ENST00000493829 PCDH11YQ9BZA8 1340 aa25.43■■□□□ 1.66
USP39-218ENST00000493829 PLEKHG2Q9H7P9 1386 aa25.43■■□□□ 1.66
USP39-218ENST00000493829 THSD7AQ9UPZ6 1657 aa25.43■■□□□ 1.66
USP39-218ENST00000493829 GNAT3A8MTJ3 354 aa25.42■■□□□ 1.66
USP39-218ENST00000493829 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP25.42■■□□□ 1.669e-7■□□□□ 10
USP39-218ENST00000493829 CYP27B1O15528 508 aa25.42■■□□□ 1.66
USP39-218ENST00000493829 RTF1Q92541 710 aaKnown RBP25.42■■□□□ 1.66
USP39-218ENST00000493829 CDCA7Q9BWT1 371 aaPredicted RBP25.42■■□□□ 1.66
USP39-218ENST00000493829 VIRMAQ69YN4 1812 aaKnown RBP25.41■■□□□ 1.66
USP39-218ENST00000493829 LMOD3Q0VAK6 560 aa25.41■■□□□ 1.66
USP39-218ENST00000493829 AKAP4Q5JQC9 854 aa25.41■■□□□ 1.66
USP39-218ENST00000493829 PHKG2P15735 406 aa25.4■■□□□ 1.66
USP39-218ENST00000493829 DDB1Q16531 1140 aa25.4■■□□□ 1.66
USP39-218ENST00000493829 ZNF521Q96K83 1311 aa25.39■■□□□ 1.66
USP39-218ENST00000493829 CCDC27Q2M243 656 aa25.39■■□□□ 1.66
USP39-218ENST00000493829 MPRIPQ6WCQ1 1025 aa25.39■■□□□ 1.66
USP39-218ENST00000493829 EXOC5O00471 708 aa25.39■■□□□ 1.65
USP39-218ENST00000493829 IFNL2Q8IZJ0 200 aa25.39■■□□□ 1.65
USP39-218ENST00000493829 NGEFQ8N5V2 710 aa25.39■■□□□ 1.65
USP39-218ENST00000493829 RGS17Q9UGC6 210 aaPredicted RBP25.39■■□□□ 1.65
USP39-218ENST00000493829 KDM6AO15550 1401 aaPredicted RBP25.36■■□□□ 1.65
USP39-218ENST00000493829 CDCA7LQ96GN5 454 aa25.36■■□□□ 1.65
USP39-218ENST00000493829 LGR6Q9HBX8 967 aa25.36■■□□□ 1.65
USP39-218ENST00000493829 SCN11AQ9UI33 1791 aa25.35■■□□□ 1.65
USP39-218ENST00000493829 IL17REQ8NFR9 667 aa25.35■■□□□ 1.65
USP39-218ENST00000493829 LAS1LQ9Y4W2 734 aaKnown RBP25.34■■□□□ 1.65
USP39-218ENST00000493829 GOLGA2Q08379 1002 aa25.33■■□□□ 1.65
USP39-218ENST00000493829 NCBP3Q53F19 620 aaKnown RBP25.33■■□□□ 1.65
USP39-218ENST00000493829 ADAMTS7Q9UKP4 1686 aa25.33■■□□□ 1.65
USP39-218ENST00000493829 TOGARAM1Q9Y4F4 1720 aa25.33■■□□□ 1.65
USP39-218ENST00000493829 HTATSF1O43719 755 aaKnown RBP25.32■■□□□ 1.64
USP39-218ENST00000493829 RBM6P78332 1123 aaKnown RBP25.32■■□□□ 1.64
USP39-218ENST00000493829 POTEAQ6S8J7 498 aa25.32■■□□□ 1.64
USP39-218ENST00000493829 SEPT12Q8IYM1 358 aa25.32■■□□□ 1.64
USP39-218ENST00000493829 SPINK5Q9NQ38 1064 aaPredicted RBP25.32■■□□□ 1.64
USP39-218ENST00000493829 RNMTO43148 476 aaKnown RBP25.32■■□□□ 1.64
USP39-218ENST00000493829 WDR63Q8IWG1 891 aa25.31■■□□□ 1.64
USP39-218ENST00000493829 MARCH10Q8NA82 808 aaPredicted RBP25.3■■□□□ 1.64
USP39-218ENST00000493829 DOT1LQ8TEK3 1739 aa25.3■■□□□ 1.64
USP39-218ENST00000493829 CEMIPQ8WUJ3 1361 aa25.3■■□□□ 1.64
USP39-218ENST00000493829 HSP90AB1P08238 724 aaKnown RBP25.29■■□□□ 1.64
USP39-218ENST00000493829 RXRBP28702 533 aa25.29■■□□□ 1.64
USP39-218ENST00000493829 DCAF5Q96JK2 942 aa25.29■■□□□ 1.64
USP39-218ENST00000493829 BRWD3Q6RI45 1802 aa25.29■■□□□ 1.64
USP39-218ENST00000493829 PDE3BQ13370 1112 aa25.29■■□□□ 1.64
USP39-218ENST00000493829 ONECUT3O60422 494 aaPredicted RBP25.28■■□□□ 1.64
USP39-218ENST00000493829 CALD1Q05682 793 aaKnown RBP25.28■■□□□ 1.64
USP39-218ENST00000493829 TEFQ10587 303 aa25.28■■□□□ 1.64
USP39-218ENST00000493829 FAM182BQ5T319 152 aa25.27■■□□□ 1.64
USP39-218ENST00000493829 TSR2Q969E8 191 aaKnown RBP25.27■■□□□ 1.64
USP39-218ENST00000493829 SIPA1L3O60292 1781 aaPredicted RBP25.27■■□□□ 1.64
USP39-218ENST00000493829 RGS12O14924 1447 aa25.26■■□□□ 1.63
USP39-218ENST00000493829 NKX1-1Q15270 411 aaPredicted RBP25.26■■□□□ 1.63
USP39-218ENST00000493829 MIS18AQ9NYP9 233 aa25.26■■□□□ 1.63
USP39-218ENST00000493829 MRC1P22897 1456 aa25.25■■□□□ 1.63
USP39-218ENST00000493829 SLFN5Q08AF3 891 aa25.25■■□□□ 1.63
USP39-218ENST00000493829 IL16Q14005 1332 aa25.25■■□□□ 1.63
USP39-218ENST00000493829 E9PSI1 815 aa25.24■■□□□ 1.63
USP39-218ENST00000493829 FANCIQ9NVI1 1328 aa25.23■■□□□ 1.63
USP39-218ENST00000493829 IFT57Q9NWB7 429 aa25.23■■□□□ 1.63
USP39-218ENST00000493829 SLC52A2Q9HAB3 445 aa25.23■■□□□ 1.63
USP39-218ENST00000493829 CABP4P57796 275 aa25.22■■□□□ 1.63
USP39-218ENST00000493829 GNAI1P63096 354 aa25.22■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms