RNA–Protein interactions for RNA: ENST00000491165.5

USF3-203, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USF3, Length 2,133 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-203ENST00000491165 MEGF6O75095 1541 aa29.61■■■□□ 2.33
USF3-203ENST00000491165 DLG5Q8TDM6 1919 aa29.6■■■□□ 2.33
USF3-203ENST00000491165 NEUROD2Q15784 382 aa29.59■■■□□ 2.33
USF3-203ENST00000491165 CARD10Q9BWT7 1032 aa29.59■■■□□ 2.33
USF3-203ENST00000491165 MAPK8IP3Q9UPT6 1336 aa29.58■■■□□ 2.33
USF3-203ENST00000491165 UNC5CLQ8IV45 518 aa29.57■■■□□ 2.32
USF3-203ENST00000491165 TNKS1BP1Q9C0C2 1729 aaKnown RBP29.57■■■□□ 2.32
USF3-203ENST00000491165 EXOC6Q8TAG9 804 aa29.56■■■□□ 2.32
USF3-203ENST00000491165 NOP58Q9Y2X3 529 aaKnown RBP29.56■■■□□ 2.32
USF3-203ENST00000491165 AFF2P51816 1311 aa29.56■■■□□ 2.32
USF3-203ENST00000491165 PNNQ9H307 717 aaKnown RBP29.55■■■□□ 2.32
USF3-203ENST00000491165 TMPOP42166 694 aaKnown RBP29.54■■■□□ 2.32
USF3-203ENST00000491165 MTHFSDQ2M296 383 aaKnown RBP29.54■■■□□ 2.32
USF3-203ENST00000491165 USP21Q9UK80 565 aa29.54■■■□□ 2.32
USF3-203ENST00000491165 WNK3Q9BYP7 1800 aa29.53■■■□□ 2.32
USF3-203ENST00000491165 SPATA31A1Q5TZJ5 1347 aa29.52■■■□□ 2.32
USF3-203ENST00000491165 ANP32AP39687 249 aaKnown RBP29.52■■■□□ 2.32
USF3-203ENST00000491165 CDCA7LQ96GN5 454 aa29.51■■■□□ 2.32
USF3-203ENST00000491165 PARP4Q9UKK3 1724 aaKnown RBP29.5■■■□□ 2.31
USF3-203ENST00000491165 SPATA31A5Q5VU36 1347 aa29.5■■■□□ 2.31
USF3-203ENST00000491165 SPATA31A7Q8IWB4 1347 aa29.5■■■□□ 2.31
USF3-203ENST00000491165 NFE2L2Q16236 605 aa29.5■■■□□ 2.31
USF3-203ENST00000491165 RAPGEF4Q8WZA2 1011 aa29.5■■■□□ 2.31
USF3-203ENST00000491165 PKD1L3Q7Z443 1732 aa29.49■■■□□ 2.31
USF3-203ENST00000491165 NEFMP07197 916 aa29.48■■■□□ 2.31
USF3-203ENST00000491165 RIPK4P57078 832 aa29.48■■■□□ 2.31
USF3-203ENST00000491165 TRIM35Q9UPQ4 493 aa29.48■■■□□ 2.31
USF3-203ENST00000491165 SHANK3Q9BYB0 1731 aa29.48■■■□□ 2.31
USF3-203ENST00000491165 OVOS2A0A0G2JMS6 1433 aa29.48■■■□□ 2.31
USF3-203ENST00000491165 DISP2A7MBM2 1401 aa29.47■■■□□ 2.31
USF3-203ENST00000491165 VPS72Q15906 364 aa29.47■■■□□ 2.31
USF3-203ENST00000491165 CCDC9Q9Y3X0 531 aaKnown RBP29.47■■■□□ 2.31
USF3-203ENST00000491165 IL2RBP14784 551 aa29.46■■■□□ 2.31
USF3-203ENST00000491165 PHF23Q9BUL5 403 aaPredicted RBP29.46■■■□□ 2.31
USF3-203ENST00000491165 ZNF521Q96K83 1311 aa29.46■■■□□ 2.31
USF3-203ENST00000491165 TATP17735 454 aaPredicted RBP29.45■■■□□ 2.31
USF3-203ENST00000491165 WWC1Q8IX03 1113 aa29.44■■■□□ 2.3
USF3-203ENST00000491165 IPO9Q96P70 1041 aaKnown RBP29.44■■■□□ 2.3
USF3-203ENST00000491165 GLI3P10071 1580 aa29.44■■■□□ 2.3
USF3-203ENST00000491165 TCERG1O14776 1098 aaKnown RBP29.43■■■□□ 2.3
USF3-203ENST00000491165 ILDR1Q86SU0 546 aaPredicted RBP29.43■■■□□ 2.3
USF3-203ENST00000491165 DCTN1Q14203 1278 aa29.42■■■□□ 2.3
USF3-203ENST00000491165 ATRNO75882 1429 aa29.42■■■□□ 2.3
USF3-203ENST00000491165 VIRMAQ69YN4 1812 aaKnown RBP29.42■■■□□ 2.3
USF3-203ENST00000491165 GAS2L2Q8NHY3 880 aa29.41■■■□□ 2.3
USF3-203ENST00000491165 THUMPD2Q9BTF0 503 aaKnown RBP29.41■■■□□ 2.3
USF3-203ENST00000491165 PLEKHO1Q53GL0 409 aaPredicted RBP29.41■■■□□ 2.3
USF3-203ENST00000491165 CCDC27Q2M243 656 aa29.39■■■□□ 2.3
USF3-203ENST00000491165 AMOTQ4VCS5 1084 aa29.39■■■□□ 2.3
USF3-203ENST00000491165 ZNF530Q6P9A1 599 aaPredicted RBP29.39■■■□□ 2.3
USF3-203ENST00000491165 EP400Q96L91 3159 aa29.39■■■□□ 2.3
USF3-203ENST00000491165 THRAP3Q9Y2W1 955 aaKnown RBP29.39■■■□□ 2.3
USF3-203ENST00000491165 CYP27B1O15528 508 aa29.38■■■□□ 2.29
USF3-203ENST00000491165 FAM98CQ17RN3 349 aaKnown RBP29.38■■■□□ 2.29
USF3-203ENST00000491165 SPINK5Q9NQ38 1064 aaPredicted RBP29.38■■■□□ 2.29
USF3-203ENST00000491165 LRRC37A3O60309 1634 aa29.38■■■□□ 2.29
USF3-203ENST00000491165 MCM10Q7L590 875 aa29.38■■■□□ 2.29
USF3-203ENST00000491165 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP29.37■■■□□ 2.299e-6■□□□□ 9.4
USF3-203ENST00000491165 GJD4Q96KN9 370 aaPredicted RBP29.36■■■□□ 2.29
USF3-203ENST00000491165 BCL11AQ9H165 835 aa29.36■■■□□ 2.29
USF3-203ENST00000491165 MAP3K5Q99683 1374 aa29.36■■■□□ 2.29
USF3-203ENST00000491165 PLEKHG2Q9H7P9 1386 aa29.36■■■□□ 2.29
USF3-203ENST00000491165 BARGINQ6ZT62 677 aa29.36■■■□□ 2.29
USF3-203ENST00000491165 ZCRB1Q8TBF4 217 aaKnown RBP29.36■■■□□ 2.29
USF3-203ENST00000491165 QTRT2Q9H974 415 aaKnown RBP29.36■■■□□ 2.29
USF3-203ENST00000491165 TRPC5Q9UL62 973 aaPredicted RBP29.36■■■□□ 2.29
USF3-203ENST00000491165 NCBP3Q53F19 620 aaKnown RBP29.35■■■□□ 2.29
USF3-203ENST00000491165 GNAT3A8MTJ3 354 aa29.35■■■□□ 2.29
USF3-203ENST00000491165 SPG7Q9UQ90 795 aa29.35■■■□□ 2.29
USF3-203ENST00000491165 NGEFQ8N5V2 710 aa29.34■■■□□ 2.29
USF3-203ENST00000491165 PLIN1O60240 522 aa29.33■■■□□ 2.29
USF3-203ENST00000491165 PHKG2P15735 406 aa29.33■■■□□ 2.29
USF3-203ENST00000491165 RGS17Q9UGC6 210 aaPredicted RBP29.33■■■□□ 2.29
USF3-203ENST00000491165 MS4A1P11836 297 aa29.33■■■□□ 2.29
USF3-203ENST00000491165 AKAP4Q5JQC9 854 aa29.33■■■□□ 2.29
USF3-203ENST00000491165 IL17REQ8NFR9 667 aa29.33■■■□□ 2.29
USF3-203ENST00000491165 THSD7AQ9UPZ6 1657 aa29.33■■■□□ 2.29
USF3-203ENST00000491165 MPRIPQ6WCQ1 1025 aa29.32■■■□□ 2.28
USF3-203ENST00000491165 LGR6Q9HBX8 967 aa29.32■■■□□ 2.28
USF3-203ENST00000491165 ZBTB47Q9UFB7 747 aaPredicted RBP29.32■■■□□ 2.28
USF3-203ENST00000491165 ADAMTS7Q9UKP4 1686 aa29.31■■■□□ 2.28
USF3-203ENST00000491165 TNS2Q63HR2 1409 aa29.31■■■□□ 2.28
USF3-203ENST00000491165 DDX54Q8TDD1 881 aaKnown RBP29.3■■■□□ 2.28
USF3-203ENST00000491165 PCDH11XQ9BZA7 1347 aa29.3■■■□□ 2.28
USF3-203ENST00000491165 PCDH11YQ9BZA8 1340 aa29.3■■■□□ 2.28
USF3-203ENST00000491165 KDM6AO15550 1401 aaPredicted RBP29.3■■■□□ 2.28
USF3-203ENST00000491165 SCN11AQ9UI33 1791 aa29.3■■■□□ 2.28
USF3-203ENST00000491165 C1orf141Q5JVX7 400 aa29.3■■■□□ 2.28
USF3-203ENST00000491165 CRBNQ96SW2 442 aa29.3■■■□□ 2.28
USF3-203ENST00000491165 IFNL2Q8IZJ0 200 aa29.29■■■□□ 2.28
USF3-203ENST00000491165 GOLGA2Q08379 1002 aa29.28■■■□□ 2.28
USF3-203ENST00000491165 PDE4AP27815 886 aa29.27■■■□□ 2.28
USF3-203ENST00000491165 LMOD3Q0VAK6 560 aa29.27■■■□□ 2.28
USF3-203ENST00000491165 RTF1Q92541 710 aaKnown RBP29.27■■■□□ 2.28
USF3-203ENST00000491165 CEMIPQ8WUJ3 1361 aa29.27■■■□□ 2.28
USF3-203ENST00000491165 DDB1Q16531 1140 aa29.27■■■□□ 2.28
USF3-203ENST00000491165 ZNF772Q68DY9 489 aaPredicted RBP29.27■■■□□ 2.28
USF3-203ENST00000491165 WDR63Q8IWG1 891 aa29.27■■■□□ 2.28
USF3-203ENST00000491165 CDCA7Q9BWT1 371 aaPredicted RBP29.27■■■□□ 2.28
USF3-203ENST00000491165 EXOC5O00471 708 aa29.26■■■□□ 2.27
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms