RNA–Protein interactions for RNA: ENST00000487698.5

SF3B1-211, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 2,127 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-211ENST00000487698 MAP3K5Q99683 1374 aa12.21□□□□□ -0.45
SF3B1-211ENST00000487698 HTATSF1O43719 755 aaKnown RBP12.21□□□□□ -0.45
SF3B1-211ENST00000487698 MCM10Q7L590 875 aa12.21□□□□□ -0.45
SF3B1-211ENST00000487698 CRBNQ96SW2 442 aa12.2□□□□□ -0.46
SF3B1-211ENST00000487698 ADAMTS7Q9UKP4 1686 aa12.2□□□□□ -0.46
SF3B1-211ENST00000487698 LAS1LQ9Y4W2 734 aaKnown RBP12.2□□□□□ -0.46
SF3B1-211ENST00000487698 CHL1O00533 1208 aa12.19□□□□□ -0.46
SF3B1-211ENST00000487698 B4GALNT3Q6L9W6 998 aa12.19□□□□□ -0.46
SF3B1-211ENST00000487698 ZNF428Q96B54 188 aa12.19□□□□□ -0.46
SF3B1-211ENST00000487698 PKD1L3Q7Z443 1732 aa12.19□□□□□ -0.46
SF3B1-211ENST00000487698 GNAT3A8MTJ3 354 aa12.19□□□□□ -0.46
SF3B1-211ENST00000487698 PDE3AQ14432 1141 aa12.19□□□□□ -0.46
SF3B1-211ENST00000487698 PLEKHG2Q9H7P9 1386 aa12.18□□□□□ -0.46
SF3B1-211ENST00000487698 RTF1Q92541 710 aaKnown RBP12.18□□□□□ -0.46
SF3B1-211ENST00000487698 COL16A1Q07092 1604 aaPredicted RBP12.18□□□□□ -0.46
SF3B1-211ENST00000487698 CHRNA2Q15822 529 aa12.17□□□□□ -0.46
SF3B1-211ENST00000487698 ALDH1L2Q3SY69 923 aa12.17□□□□□ -0.46
SF3B1-211ENST00000487698 SSH1Q8WYL5 1049 aa12.17□□□□□ -0.46
SF3B1-211ENST00000487698 BCL2L13Q9BXK5 485 aa12.17□□□□□ -0.46
SF3B1-211ENST00000487698 PHLPP1O60346 1717 aa12.17□□□□□ -0.46
SF3B1-211ENST00000487698 CEMIPQ8WUJ3 1361 aa12.17□□□□□ -0.46
SF3B1-211ENST00000487698 SIPA1L3O60292 1781 aaPredicted RBP12.17□□□□□ -0.46
SF3B1-211ENST00000487698 KDM3BQ7LBC6 1761 aa12.17□□□□□ -0.46
SF3B1-211ENST00000487698 VAMP4O75379 141 aa12.17□□□□□ -0.46
SF3B1-211ENST00000487698 COL5A2P05997 1499 aaPredicted RBP12.17□□□□□ -0.46
SF3B1-211ENST00000487698 PARP4Q9UKK3 1724 aaKnown RBP12.16□□□□□ -0.46
SF3B1-211ENST00000487698 BRPF1P55201 1214 aaPredicted RBP12.16□□□□□ -0.46
SF3B1-211ENST00000487698 TSPYL6Q8N831 410 aa12.16□□□□□ -0.46
SF3B1-211ENST00000487698 SMC4Q9NTJ3 1288 aa12.16□□□□□ -0.46
SF3B1-211ENST00000487698 MEGF6O75095 1541 aa12.16□□□□□ -0.46
SF3B1-211ENST00000487698 OVOS2A0A0G2JMS6 1433 aa12.16□□□□□ -0.46
SF3B1-211ENST00000487698 AMOTQ4VCS5 1084 aa12.16□□□□□ -0.46
SF3B1-211ENST00000487698 IL17REQ8NFR9 667 aa12.16□□□□□ -0.46
SF3B1-211ENST00000487698 CCDC136Q96JN2 1154 aa12.16□□□□□ -0.46
SF3B1-211ENST00000487698 SCN11AQ9UI33 1791 aa12.15□□□□□ -0.46
SF3B1-211ENST00000487698 PLEKHO1Q53GL0 409 aaPredicted RBP12.15□□□□□ -0.46
SF3B1-211ENST00000487698 C8orf58Q8NAV2 365 aa12.15□□□□□ -0.46
SF3B1-211ENST00000487698 FRAT1Q92837 279 aaPredicted RBP12.15□□□□□ -0.46
SF3B1-211ENST00000487698 PRDM11Q9NQV5 511 aa12.15□□□□□ -0.46
SF3B1-211ENST00000487698 COL14A1Q05707 1796 aaKnown RBP12.15□□□□□ -0.47
SF3B1-211ENST00000487698 CANXP27824 592 aaKnown RBP12.14□□□□□ -0.47
SF3B1-211ENST00000487698 TWISTNBQ3B726 338 aaPredicted RBP12.14□□□□□ -0.47
SF3B1-211ENST00000487698 PELP1Q8IZL8 1130 aaKnown RBP12.14□□□□□ -0.47
SF3B1-211ENST00000487698 AKAP4Q5JQC9 854 aa12.14□□□□□ -0.47
SF3B1-211ENST00000487698 ZKSCAN2Q63HK3 967 aa12.14□□□□□ -0.47
SF3B1-211ENST00000487698 NLRP2Q9NX02 1062 aa12.14□□□□□ -0.47
SF3B1-211ENST00000487698 WDR17Q8IZU2 1322 aa12.14□□□□□ -0.47
SF3B1-211ENST00000487698 KIF16BQ96L93 1317 aa12.14□□□□□ -0.47
SF3B1-211ENST00000487698 RLBP1P12271 317 aa12.13□□□□□ -0.47
SF3B1-211ENST00000487698 ZNF530Q6P9A1 599 aaPredicted RBP12.13□□□□□ -0.47
SF3B1-211ENST00000487698 PANK1Q8TE04 598 aa12.13□□□□□ -0.47
SF3B1-211ENST00000487698 BABAM1Q9NWV8 329 aa12.13□□□□□ -0.47
SF3B1-211ENST00000487698 TNNQ9UQP3 1299 aa12.13□□□□□ -0.47
SF3B1-211ENST00000487698 CACNA1FO60840 1977 aa12.13□□□□□ -0.47
SF3B1-211ENST00000487698 SHANK3Q9BYB0 1731 aa12.12□□□□□ -0.47
SF3B1-211ENST00000487698 TSPYL4Q9UJ04 414 aa12.12□□□□□ -0.47
SF3B1-211ENST00000487698 CSB-PGBD3P0DP91 1061 aa12.11□□□□□ -0.47
SF3B1-211ENST00000487698 TRIM27P14373 513 aa12.11□□□□□ -0.47
SF3B1-211ENST00000487698 HAP1P54257 671 aaPredicted RBP12.11□□□□□ -0.47
SF3B1-211ENST00000487698 KRT24Q2M2I5 525 aa12.11□□□□□ -0.47
SF3B1-211ENST00000487698 MRPL50Q8N5N7 158 aaKnown RBP12.11□□□□□ -0.47
SF3B1-211ENST00000487698 RAPGEF4Q8WZA2 1011 aa12.11□□□□□ -0.47
SF3B1-211ENST00000487698 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.11□□□□□ -0.479e-27■■□□□ 14.2
SF3B1-211ENST00000487698 ELL2O00472 640 aaPredicted RBP12.11□□□□□ -0.47
SF3B1-211ENST00000487698 TAF7Q15545 349 aaPredicted RBP12.11□□□□□ -0.47
SF3B1-211ENST00000487698 ATF7IPQ6VMQ6 1270 aa12.11□□□□□ -0.47
SF3B1-211ENST00000487698 MIS18AQ9NYP9 233 aa12.11□□□□□ -0.47
SF3B1-211ENST00000487698 NOB1Q9ULX3 412 aaKnown RBP12.11□□□□□ -0.47
SF3B1-211ENST00000487698 PLCH1Q4KWH8 1693 aa12.1□□□□□ -0.47
SF3B1-211ENST00000487698 MS4A1P11836 297 aa12.1□□□□□ -0.47
SF3B1-211ENST00000487698 LGR6Q9HBX8 967 aa12.1□□□□□ -0.47
SF3B1-211ENST00000487698 COG6Q9Y2V7 657 aa12.1□□□□□ -0.47
SF3B1-211ENST00000487698 TATP17735 454 aaPredicted RBP12.1□□□□□ -0.47
SF3B1-211ENST00000487698 C1orf141Q5JVX7 400 aa12.1□□□□□ -0.47
SF3B1-211ENST00000487698 DZIP1LQ8IYY4 767 aaKnown RBP12.1□□□□□ -0.47
SF3B1-211ENST00000487698 MRC1P22897 1456 aa12.09□□□□□ -0.47
SF3B1-211ENST00000487698 IPO8O15397 1037 aaKnown RBP12.09□□□□□ -0.47
SF3B1-211ENST00000487698 RNMTO43148 476 aaKnown RBP12.09□□□□□ -0.47
SF3B1-211ENST00000487698 TOM1O60784 492 aa12.09□□□□□ -0.47
SF3B1-211ENST00000487698 AAMPQ13685 434 aa12.09□□□□□ -0.47
SF3B1-211ENST00000487698 ARHGAP45Q92619 1136 aa12.09□□□□□ -0.47
SF3B1-211ENST00000487698 KDM6AO15550 1401 aaPredicted RBP12.09□□□□□ -0.47
SF3B1-211ENST00000487698 WNK3Q9BYP7 1800 aa12.09□□□□□ -0.47
SF3B1-211ENST00000487698 SOS1Q07889 1333 aaPredicted RBP12.08□□□□□ -0.47
SF3B1-211ENST00000487698 MVPQ14764 893 aaKnown RBP12.08□□□□□ -0.47
SF3B1-211ENST00000487698 CLUAP1Q96AJ1 413 aa12.08□□□□□ -0.47
SF3B1-211ENST00000487698 NRAPQ86VF7 1730 aa12.08□□□□□ -0.48
SF3B1-211ENST00000487698 KDM2BQ8NHM5 1336 aa12.08□□□□□ -0.48
SF3B1-211ENST00000487698 MPRIPQ6WCQ1 1025 aa12.08□□□□□ -0.48
SF3B1-211ENST00000487698 FTSJ3Q8IY81 847 aaKnown RBP12.08□□□□□ -0.48
SF3B1-211ENST00000487698 SPG7Q9UQ90 795 aa12.08□□□□□ -0.48
SF3B1-211ENST00000487698 CARD10Q9BWT7 1032 aa12.07□□□□□ -0.48
SF3B1-211ENST00000487698 RGS12O14924 1447 aa12.07□□□□□ -0.48
SF3B1-211ENST00000487698 PHKG2P15735 406 aa12.07□□□□□ -0.48
SF3B1-211ENST00000487698 TOM1L2Q6ZVM7 507 aa12.07□□□□□ -0.48
SF3B1-211ENST00000487698 N4BP2Q86UW6 1770 aaPredicted RBP12.06□□□□□ -0.48
SF3B1-211ENST00000487698 ABCC4O15439 1325 aa12.06□□□□□ -0.48
SF3B1-211ENST00000487698 TCERG1O14776 1098 aaKnown RBP12.05□□□□□ -0.48
SF3B1-211ENST00000487698 TEFQ10587 303 aa12.05□□□□□ -0.48
SF3B1-211ENST00000487698 LARP1Q6PKG0 1096 aaKnown RBP12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms