RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 IRX6P78412 446 aaPredicted RBP18.55■□□□□ 0.56
CUX1-209ENST00000487284 NEUROD2Q15784 382 aa18.55■□□□□ 0.56
CUX1-209ENST00000487284 MEX3CQ5U5Q3 659 aaKnown RBP18.55■□□□□ 0.56
CUX1-209ENST00000487284 CRB1P82279 1406 aa18.54■□□□□ 0.56
CUX1-209ENST00000487284 PHACTR3Q96KR7 559 aa18.54■□□□□ 0.56
CUX1-209ENST00000487284 BCL9LQ86UU0 1499 aa18.53■□□□□ 0.56
CUX1-209ENST00000487284 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.52■□□□□ 0.56
CUX1-209ENST00000487284 FNBP4Q8N3X1 1017 aaPredicted RBP18.52■□□□□ 0.56
CUX1-209ENST00000487284 CARD10Q9BWT7 1032 aa18.52■□□□□ 0.56
CUX1-209ENST00000487284 RRP1P56182 461 aaKnown RBP18.51■□□□□ 0.55
CUX1-209ENST00000487284 MEGF6O75095 1541 aa18.51■□□□□ 0.55
CUX1-209ENST00000487284 NEFMP07197 916 aa18.51■□□□□ 0.55
CUX1-209ENST00000487284 USP35Q9P2H5 1018 aa18.51■□□□□ 0.55
CUX1-209ENST00000487284 TRIM35Q9UPQ4 493 aa18.51■□□□□ 0.55
CUX1-209ENST00000487284 UNC5CLQ8IV45 518 aa18.5■□□□□ 0.55
CUX1-209ENST00000487284 AFF2P51816 1311 aa18.49■□□□□ 0.55
CUX1-209ENST00000487284 USP21Q9UK80 565 aa18.49■□□□□ 0.55
CUX1-209ENST00000487284 PARP4Q9UKK3 1724 aaKnown RBP18.49■□□□□ 0.55
CUX1-209ENST00000487284 WNK3Q9BYP7 1800 aa18.49■□□□□ 0.55
CUX1-209ENST00000487284 IL16Q14005 1332 aa18.49■□□□□ 0.55
CUX1-209ENST00000487284 NFE2L2Q16236 605 aa18.48■□□□□ 0.55
CUX1-209ENST00000487284 RAPGEF4Q8WZA2 1011 aa18.48■□□□□ 0.55
CUX1-209ENST00000487284 RIPK4P57078 832 aa18.47■□□□□ 0.55
CUX1-209ENST00000487284 MTHFSDQ2M296 383 aaKnown RBP18.47■□□□□ 0.55
CUX1-209ENST00000487284 SPATA31A1Q5TZJ5 1347 aa18.46■□□□□ 0.55
CUX1-209ENST00000487284 PKD1L3Q7Z443 1732 aa18.46■□□□□ 0.55
CUX1-209ENST00000487284 TATP17735 454 aaPredicted RBP18.46■□□□□ 0.55
CUX1-209ENST00000487284 MYH16Q9H6N6 1097 aa18.46■□□□□ 0.55
CUX1-209ENST00000487284 CCDC9Q9Y3X0 531 aaKnown RBP18.46■□□□□ 0.55
CUX1-209ENST00000487284 SPATA31A5Q5VU36 1347 aa18.45■□□□□ 0.54
CUX1-209ENST00000487284 SPATA31A7Q8IWB4 1347 aa18.45■□□□□ 0.54
CUX1-209ENST00000487284 VPS72Q15906 364 aa18.45■□□□□ 0.54
CUX1-209ENST00000487284 OVOS2A0A0G2JMS6 1433 aa18.45■□□□□ 0.54
CUX1-209ENST00000487284 DISP2A7MBM2 1401 aa18.44■□□□□ 0.54
CUX1-209ENST00000487284 IL2RBP14784 551 aa18.44■□□□□ 0.54
CUX1-209ENST00000487284 PPP4R2Q9NY27 417 aa18.44■□□□□ 0.54
CUX1-209ENST00000487284 PLEKHO1Q53GL0 409 aaPredicted RBP18.42■□□□□ 0.54
CUX1-209ENST00000487284 GAS2L2Q8NHY3 880 aa18.42■□□□□ 0.54
CUX1-209ENST00000487284 SHANK3Q9BYB0 1731 aa18.42■□□□□ 0.54
CUX1-209ENST00000487284 PLEKHG2Q9H7P9 1386 aa18.42■□□□□ 0.54
CUX1-209ENST00000487284 AMOTQ4VCS5 1084 aa18.42■□□□□ 0.54
CUX1-209ENST00000487284 GLI3P10071 1580 aa18.41■□□□□ 0.54
CUX1-209ENST00000487284 FANCIQ9NVI1 1328 aa18.41■□□□□ 0.54
CUX1-209ENST00000487284 ATRNO75882 1429 aa18.4■□□□□ 0.54
CUX1-209ENST00000487284 LMOD3Q0VAK6 560 aa18.4■□□□□ 0.54
CUX1-209ENST00000487284 ZNF530Q6P9A1 599 aaPredicted RBP18.4■□□□□ 0.54
CUX1-209ENST00000487284 THRAP3Q9Y2W1 955 aaKnown RBP18.4■□□□□ 0.54
CUX1-209ENST00000487284 VIRMAQ69YN4 1812 aaKnown RBP18.4■□□□□ 0.54
CUX1-209ENST00000487284 LRRC37A3O60309 1634 aa18.39■□□□□ 0.54
CUX1-209ENST00000487284 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.39■□□□□ 0.53
CUX1-209ENST00000487284 CALD1Q05682 793 aaKnown RBP18.38■□□□□ 0.53
CUX1-209ENST00000487284 TRPC5Q9UL62 973 aaPredicted RBP18.38■□□□□ 0.53
CUX1-209ENST00000487284 SPG7Q9UQ90 795 aa18.38■□□□□ 0.53
CUX1-209ENST00000487284 MAP3K5Q99683 1374 aa18.38■□□□□ 0.53
CUX1-209ENST00000487284 BARGINQ6ZT62 677 aa18.38■□□□□ 0.53
CUX1-209ENST00000487284 ZCRB1Q8TBF4 217 aaKnown RBP18.38■□□□□ 0.53
CUX1-209ENST00000487284 GNAT3A8MTJ3 354 aa18.37■□□□□ 0.53
CUX1-209ENST00000487284 CT47B1P0C2W7 299 aaPredicted RBP18.37■□□□□ 0.53
CUX1-209ENST00000487284 DCTN1Q14203 1278 aa18.37■□□□□ 0.53
CUX1-209ENST00000487284 FAM98CQ17RN3 349 aaKnown RBP18.37■□□□□ 0.53
CUX1-209ENST00000487284 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.37■□□□□ 0.53
CUX1-209ENST00000487284 CYP27B1O15528 508 aa18.36■□□□□ 0.53
CUX1-209ENST00000487284 PLIN1O60240 522 aa18.36■□□□□ 0.53
CUX1-209ENST00000487284 AKAP4Q5JQC9 854 aa18.36■□□□□ 0.53
CUX1-209ENST00000487284 C1orf141Q5JVX7 400 aa18.36■□□□□ 0.53
CUX1-209ENST00000487284 GJD4Q96KN9 370 aaPredicted RBP18.36■□□□□ 0.53
CUX1-209ENST00000487284 THUMPD2Q9BTF0 503 aaKnown RBP18.36■□□□□ 0.53
CUX1-209ENST00000487284 CDCA7Q9BWT1 371 aaPredicted RBP18.36■□□□□ 0.53
CUX1-209ENST00000487284 QTRT2Q9H974 415 aaKnown RBP18.36■□□□□ 0.53
CUX1-209ENST00000487284 TNS2Q63HR2 1409 aa18.35■□□□□ 0.53
CUX1-209ENST00000487284 MCM10Q7L590 875 aa18.35■□□□□ 0.53
CUX1-209ENST00000487284 TSR2Q969E8 191 aaKnown RBP18.35■□□□□ 0.53
CUX1-209ENST00000487284 THSD7AQ9UPZ6 1657 aa18.35■□□□□ 0.53
CUX1-209ENST00000487284 PCDH11XQ9BZA7 1347 aa18.34■□□□□ 0.53
CUX1-209ENST00000487284 PCDH11YQ9BZA8 1340 aa18.34■□□□□ 0.53
CUX1-209ENST00000487284 PHKG2P15735 406 aa18.34■□□□□ 0.53
CUX1-209ENST00000487284 RTF1Q92541 710 aaKnown RBP18.34■□□□□ 0.53
CUX1-209ENST00000487284 ADAMTS7Q9UKP4 1686 aa18.34■□□□□ 0.53
CUX1-209ENST00000487284 RARSP54136 660 aaKnown RBP18.34■□□□□ 0.53
CUX1-209ENST00000487284 ZNF772Q68DY9 489 aaPredicted RBP18.34■□□□□ 0.53
CUX1-209ENST00000487284 IFNL2Q8IZJ0 200 aa18.34■□□□□ 0.53
CUX1-209ENST00000487284 IFT57Q9NWB7 429 aa18.34■□□□□ 0.53
CUX1-209ENST00000487284 SCN11AQ9UI33 1791 aa18.33■□□□□ 0.53
CUX1-209ENST00000487284 HTATSF1O43719 755 aaKnown RBP18.33■□□□□ 0.52
CUX1-209ENST00000487284 BCAR3O75815 825 aa18.33■□□□□ 0.52
CUX1-209ENST00000487284 ZNF853P0CG23 659 aa18.33■□□□□ 0.52
CUX1-209ENST00000487284 MPRIPQ6WCQ1 1025 aa18.33■□□□□ 0.52
CUX1-209ENST00000487284 GNAI1P63096 354 aa18.32■□□□□ 0.52
CUX1-209ENST00000487284 EXOSC9Q06265 439 aaKnown RBP18.32■□□□□ 0.52
CUX1-209ENST00000487284 DDB1Q16531 1140 aa18.32■□□□□ 0.52
CUX1-209ENST00000487284 PELP1Q8IZL8 1130 aaKnown RBP18.32■□□□□ 0.52
CUX1-209ENST00000487284 IL17REQ8NFR9 667 aa18.32■□□□□ 0.52
CUX1-209ENST00000487284 EXOC6Q8TAG9 804 aa18.32■□□□□ 0.52
CUX1-209ENST00000487284 DDX54Q8TDD1 881 aaKnown RBP18.32■□□□□ 0.52
CUX1-209ENST00000487284 KDM6AO15550 1401 aaPredicted RBP18.32■□□□□ 0.52
CUX1-209ENST00000487284 EXOC5O00471 708 aa18.31■□□□□ 0.52
CUX1-209ENST00000487284 LGR6Q9HBX8 967 aa18.31■□□□□ 0.52
CUX1-209ENST00000487284 A0A0G2JS52 829 aa18.3■□□□□ 0.52
CUX1-209ENST00000487284 MYT1Q01538 1121 aa18.3■□□□□ 0.52
CUX1-209ENST00000487284 CEMIPQ8WUJ3 1361 aa18.3■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 101.8 ms