RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 ZCRB1Q8TBF4 217 aaKnown RBP19.98■□□□□ 0.79
USP4-212ENST00000486549 CAMKK2Q96RR4 588 aa19.98■□□□□ 0.79
USP4-212ENST00000486549 NCAPD2Q15021 1401 aa19.98■□□□□ 0.79
USP4-212ENST00000486549 BCL9O00512 1426 aa19.97■□□□□ 0.79
USP4-212ENST00000486549 KAT6BQ8WYB5 2073 aa19.97■□□□□ 0.79
USP4-212ENST00000486549 EZH2Q15910 746 aaKnown RBP19.96■□□□□ 0.79
USP4-212ENST00000486549 NBPF14Q5TI25 921 aa19.96■□□□□ 0.79
USP4-212ENST00000486549 IGSF1Q8N6C5 1336 aa19.96■□□□□ 0.79
USP4-212ENST00000486549 PKD1L3Q7Z443 1732 aa19.96■□□□□ 0.79
USP4-212ENST00000486549 NHSQ6T4R5 1651 aa19.95■□□□□ 0.78
USP4-212ENST00000486549 ACSBG1Q96GR2 724 aa19.95■□□□□ 0.78
USP4-212ENST00000486549 BCL11BQ9C0K0 894 aaPredicted RBP19.95■□□□□ 0.78
USP4-212ENST00000486549 DOT1LQ8TEK3 1739 aa19.93■□□□□ 0.78
USP4-212ENST00000486549 PLSCR1O15162 318 aa19.93■□□□□ 0.78
USP4-212ENST00000486549 IL13P35225 146 aa19.93■□□□□ 0.78
USP4-212ENST00000486549 PTF1AQ7RTS3 328 aa19.93■□□□□ 0.78
USP4-212ENST00000486549 PCDH11XQ9BZA7 1347 aa19.92■□□□□ 0.78
USP4-212ENST00000486549 PCDH11YQ9BZA8 1340 aa19.92■□□□□ 0.78
USP4-212ENST00000486549 COL3A1P02461 1466 aaPredicted RBP19.92■□□□□ 0.78
USP4-212ENST00000486549 KCNQ2O43526 872 aa19.91■□□□□ 0.78
USP4-212ENST00000486549 DIAPH1O60610 1272 aaKnown RBP19.91■□□□□ 0.78
USP4-212ENST00000486549 PPP2R1AP30153 589 aa19.91■□□□□ 0.78
USP4-212ENST00000486549 AEBP1Q8IUX7 1158 aa19.91■□□□□ 0.78
USP4-212ENST00000486549 PSDA5PKW4 1024 aaPredicted RBP19.9■□□□□ 0.78
USP4-212ENST00000486549 BTAF1O14981 1849 aa19.89■□□□□ 0.77
USP4-212ENST00000486549 R3HDM1Q15032 1099 aaKnown RBP19.89■□□□□ 0.77
USP4-212ENST00000486549 SULT6B1Q6IMI4 303 aa19.89■□□□□ 0.77
USP4-212ENST00000486549 SPG7Q9UQ90 795 aa19.89■□□□□ 0.77
USP4-212ENST00000486549 SRCAPQ6ZRS2 3230 aa19.89■□□□□ 0.77
USP4-212ENST00000486549 SYTL4Q96C24 671 aaPredicted RBP19.88■□□□□ 0.77
USP4-212ENST00000486549 CFAP53Q96M91 514 aa19.88■□□□□ 0.77
USP4-212ENST00000486549 RREB1Q92766 1687 aa19.87■□□□□ 0.77
USP4-212ENST00000486549 CYP27B1O15528 508 aa19.87■□□□□ 0.77
USP4-212ENST00000486549 HMOX1P09601 288 aa19.87■□□□□ 0.77
USP4-212ENST00000486549 RGPD3A6NKT7 1758 aaPredicted RBP19.86■□□□□ 0.77
USP4-212ENST00000486549 RGPD4Q7Z3J3 1758 aa19.86■□□□□ 0.77
USP4-212ENST00000486549 ZNF316A6NFI3 1004 aaPredicted RBP19.86■□□□□ 0.77
USP4-212ENST00000486549 U2SURPO15042 1029 aaKnown RBP19.86■□□□□ 0.77
USP4-212ENST00000486549 TOGARAM1Q9Y4F4 1720 aa19.85■□□□□ 0.77
USP4-212ENST00000486549 KDRP35968 1356 aa19.85■□□□□ 0.77
USP4-212ENST00000486549 NUP188Q5SRE5 1749 aa19.85■□□□□ 0.77
USP4-212ENST00000486549 PRIM1P49642 420 aaKnown RBP19.84■□□□□ 0.77
USP4-212ENST00000486549 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.84■□□□□ 0.773e-7■□□□□ 11.2
USP4-212ENST00000486549 LRP5O75197 1615 aa19.84■□□□□ 0.77
USP4-212ENST00000486549 PLEKHO1Q53GL0 409 aaPredicted RBP19.83■□□□□ 0.77
USP4-212ENST00000486549 PLEKHG2Q9H7P9 1386 aa19.83■□□□□ 0.76
USP4-212ENST00000486549 ITGB4P16144 1822 aa19.82■□□□□ 0.76
USP4-212ENST00000486549 PHKG2P15735 406 aa19.81■□□□□ 0.76
USP4-212ENST00000486549 RALBP1Q15311 655 aa19.81■□□□□ 0.76
USP4-212ENST00000486549 ZNF530Q6P9A1 599 aaPredicted RBP19.81■□□□□ 0.76
USP4-212ENST00000486549 IFNL2Q8IZJ0 200 aa19.81■□□□□ 0.76
USP4-212ENST00000486549 AMOTQ4VCS5 1084 aa19.8■□□□□ 0.76
USP4-212ENST00000486549 NUDCQ9Y266 331 aa19.79■□□□□ 0.76
USP4-212ENST00000486549 NKX1-1Q15270 411 aaPredicted RBP19.77■□□□□ 0.76
USP4-212ENST00000486549 TXNRD1Q16881 649 aa19.77■□□□□ 0.76
USP4-212ENST00000486549 C1orf141Q5JVX7 400 aa19.77■□□□□ 0.76
USP4-212ENST00000486549 MPRIPQ6WCQ1 1025 aa19.77■□□□□ 0.76
USP4-212ENST00000486549 U2AF1L5P0DN76 240 aaPredicted RBP19.76■□□□□ 0.75
USP4-212ENST00000486549 U2AF1Q01081 240 aaKnown RBP eCLIP19.76■□□□□ 0.75
USP4-212ENST00000486549 PROM2Q8N271 834 aa19.75■□□□□ 0.75
USP4-212ENST00000486549 STK32BQ9NY57 414 aa19.75■□□□□ 0.75
USP4-212ENST00000486549 MYBBP1AQ9BQG0 1328 aaKnown RBP19.75■□□□□ 0.75
USP4-212ENST00000486549 LY75O60449 1722 aa19.74■□□□□ 0.75
USP4-212ENST00000486549 HSP90AB1P08238 724 aaKnown RBP19.74■□□□□ 0.75
USP4-212ENST00000486549 HMGB2P26583 209 aaKnown RBP19.74■□□□□ 0.75
USP4-212ENST00000486549 SPON1Q9HCB6 807 aa19.74■□□□□ 0.75
USP4-212ENST00000486549 KDM6AO15550 1401 aaPredicted RBP19.74■□□□□ 0.75
USP4-212ENST00000486549 VIRMAQ69YN4 1812 aaKnown RBP19.74■□□□□ 0.75
USP4-212ENST00000486549 PRKAR2BP31323 418 aa19.73■□□□□ 0.75
USP4-212ENST00000486549 TMOD3Q9NYL9 352 aa19.73■□□□□ 0.75
USP4-212ENST00000486549 SCN11AQ9UI33 1791 aa19.72■□□□□ 0.75
USP4-212ENST00000486549 MTHFSDQ2M296 383 aaKnown RBP19.72■□□□□ 0.75
USP4-212ENST00000486549 DCAF5Q96JK2 942 aa19.72■□□□□ 0.75
USP4-212ENST00000486549 RSPH6AQ9H0K4 717 aa19.72■□□□□ 0.75
USP4-212ENST00000486549 PRKRIP1Q9H875 184 aaPredicted RBP19.72■□□□□ 0.75
USP4-212ENST00000486549 PIGBQ92521 554 aa19.71■□□□□ 0.75
USP4-212ENST00000486549 AKAP4Q5JQC9 854 aa19.7■□□□□ 0.74
USP4-212ENST00000486549 SLC27A3Q5K4L6 730 aa19.7■□□□□ 0.74
USP4-212ENST00000486549 ANO8Q9HCE9 1232 aaPredicted RBP19.7■□□□□ 0.74
USP4-212ENST00000486549 PALLDQ8WX93 1383 aa19.7■□□□□ 0.74
USP4-212ENST00000486549 KCNQ4P56696 695 aa19.69■□□□□ 0.74
USP4-212ENST00000486549 SLC15A2Q16348 729 aa19.69■□□□□ 0.74
USP4-212ENST00000486549 PPP1R1BQ9UD71 204 aaPredicted RBP19.69■□□□□ 0.74
USP4-212ENST00000486549 PAPPAQ13219 1627 aa19.69■□□□□ 0.74
USP4-212ENST00000486549 ERVV-2B6SEH9 535 aa19.68■□□□□ 0.74
USP4-212ENST00000486549 CABP4P57796 275 aa19.68■□□□□ 0.74
USP4-212ENST00000486549 LRRC4BQ9NT99 713 aa19.68■□□□□ 0.74
USP4-212ENST00000486549 FCHSD2O94868 740 aa19.67■□□□□ 0.74
USP4-212ENST00000486549 GAS2L2Q8NHY3 880 aa19.67■□□□□ 0.74
USP4-212ENST00000486549 PHACTR3Q96KR7 559 aa19.67■□□□□ 0.74
USP4-212ENST00000486549 CCNL1Q9UK58 526 aaPredicted RBP19.67■□□□□ 0.74
USP4-212ENST00000486549 SMARCC1Q92922 1105 aaPredicted RBP19.66■□□□□ 0.74
USP4-212ENST00000486549 LGR6Q9HBX8 967 aa19.65■□□□□ 0.74
USP4-212ENST00000486549 ASAP1Q9ULH1 1129 aa19.65■□□□□ 0.74
USP4-212ENST00000486549 MAP3K5Q99683 1374 aa19.65■□□□□ 0.74
USP4-212ENST00000486549 C5P01031 1676 aa19.65■□□□□ 0.74
USP4-212ENST00000486549 RNMTO43148 476 aaKnown RBP19.64■□□□□ 0.73
USP4-212ENST00000486549 ADAMTS7Q9UKP4 1686 aa19.64■□□□□ 0.73
USP4-212ENST00000486549 TAF1LQ8IZX4 1826 aa19.63■□□□□ 0.73
USP4-212ENST00000486549 NFATC2IPQ8NCF5 419 aa19.63■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms